mRNA_H-paniculata_contig14292.2597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	mitochondrion
Exons	3
Model size	1769
Cds size	1275
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig14292.2597.1	prot_H-paniculata_contig14292.2597.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig14292 2908..4717 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929137.7242014-UTR-H-paniculata_contig14292:2451..2691	1622929137.7242014-UTR-H-paniculata_contig14292:2451..2691	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14292 2452..2691 -
1691480745.7835104-UTR-H-paniculata_contig14292:2451..2691	1691480745.7835104-UTR-H-paniculata_contig14292:2451..2691	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14292 2452..2691 -
1622929137.7383134-UTR-H-paniculata_contig14292:2732..2907	1622929137.7383134-UTR-H-paniculata_contig14292:2732..2907	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14292 2733..2907 -
1691480745.795703-UTR-H-paniculata_contig14292:2732..2907	1691480745.795703-UTR-H-paniculata_contig14292:2732..2907	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14292 2733..2907 -
1622929137.800858-UTR-H-paniculata_contig14292:4717..4796	1622929137.800858-UTR-H-paniculata_contig14292:4717..4796	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14292 4718..4796 -
1691480745.820353-UTR-H-paniculata_contig14292:4717..4796	1691480745.820353-UTR-H-paniculata_contig14292:4717..4796	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14292 4718..4796 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929137.7573373-CDS-H-paniculata_contig14292:2907..4150	1622929137.7573373-CDS-H-paniculata_contig14292:2907..4150	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig14292 2908..4150 -
1691480745.8038871-CDS-H-paniculata_contig14292:2907..4150	1691480745.8038871-CDS-H-paniculata_contig14292:2907..4150	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig14292 2908..4150 -
1622929137.7800598-CDS-H-paniculata_contig14292:4685..4717	1622929137.7800598-CDS-H-paniculata_contig14292:4685..4717	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig14292 4686..4717 -
1691480745.811845-CDS-H-paniculata_contig14292:4685..4717	1691480745.811845-CDS-H-paniculata_contig14292:4685..4717	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig14292 4686..4717 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig14292:2452..4796-
coding sequence from alignment at H-paniculata_contig14292:2452..4796-

protein sequence of mRNA_H-paniculata_contig14292.2597.1

>prot_H-paniculata_contig14292.2597.1 ID=prot_H-paniculata_contig14292.2597.1|Name=mRNA_H-paniculata_contig14292.2597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=425bp
MKALGILQKHRLTSTAAAVKAGTHGGQRVKGATAATPVGAMAEAAGGKRL
RTETRMPQQQQQQQQQDVVLETPKKRIPQQKAPIADCNNPLPLHPKASSW
PKALTADVRVTAAAATVVMTDVDEGAAEGVGGESQRPRAEAGQGRVCAGS
SEILEIGNAVAVPKKKTKPSSDDGDDGCIDSRLIVVPATSVTEDGMATGT
AMAMATASDVATAGTADLAQEGSCIFSSSSNSSCSSRDSARGRSAGNDIS
CMVGTTGREQAGGDGPSASTSIECNRQTEPTSCGGTVDDGPGDIVSATAG
EAQATIVTKKIVSSGGSTGQRVPTATDASIAAGAIVSAACVPLEGGGVGA
IDGRGGDQCGGLGGERECDNFVQAGTGLATDSADTGGGGGGGSDGGMGGL
LSQSSRVSPVLSAGVAGAGLMTGT*

mRNA from alignment at H-paniculata_contig14292:2452..4796-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig14292.2597.1 ID=mRNA_H-paniculata_contig14292.2597.1|Name=mRNA_H-paniculata_contig14292.2597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2345bp|location=Sequence derived from alignment at H-paniculata_contig14292:2452..4796- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGGTGGTGGAGGTGGAGGTGGGAAGGGTGGTGCAGGCGGCACCGTGG
CGGGAGCGGCGGCGGCGAAAGCGACGCAAATGAAGGCTCTGGGGATATTG
CAGAAGCACAGGTAGAGTGTTGTTGTTGTTGTTTTAGAGGAATGAAAATT
CTAAATATTGGCTCTGTTTTGAGTGTGTGTGTTTCTTGCTTTTTCATTTG
CCTCTAAACGTGGTATTTGATCCACCCGTCACCCCGCCTGTGGTTAACGT
GCTTGCTCATTAGTACATAATGACATCGTTACGGACGAAAGCGTCGCTAC
GTCGTACGGTGCAGCATACCACAGCGTAATTCTTGCTACTTCTCGTTATT
TAGAGACGGCATAGTACAGCAGTAACGTCCATTCTGAACTTCACTGACTA
TATTTGGTGTATGCGTACTGTTTGTGGATAATAACCAAGTAATCCAGCAG
CTTGAAGATGTTGAGCATACGTGCAGTTAGTATTTTAGGGTTATTGCCAT
ACTGTTTTCTACACTGGGCAGGAACTAGTACAGTATGTGTCACTACTTTG
ACGTGCCCTTTATTCCCACGATATTTTTTCCTAACCACATCCCCCCCCCC
CCCCCCGACACACACACACACACACACATTCCTCCCGTCCAAACAGGCTT
ACGTCAACCGCAGCAGCCGTGAAAGCAGGGACGCACGGAGGCCAACGGGT
GAAGGGAGCGACGGCAGCTACACCGGTAGGGGCAATGGCAGAAGCTGCGG
GGGGCAAGCGGCTTCGGACGGAGACAAGAATGCCACAACAGCAGCAGCAA
CAACAACAACAAGATGTAGTCCTCGAGACACCGAAAAAGAGAATACCGCA
GCAAAAGGCGCCGATTGCAGATTGCAACAACCCTCTTCCTCTCCACCCCA
AAGCTTCCAGCTGGCCGAAAGCTTTGACGGCGGACGTTCGGGTTACTGCT
GCTGCTGCTACCGTTGTGATGACAGATGTAGACGAAGGAGCAGCAGAGGG
GGTAGGAGGGGAGTCGCAGCGGCCCAGGGCAGAGGCGGGTCAGGGGCGGG
TCTGCGCTGGTAGTAGCGAGATACTGGAGATTGGGAACGCCGTGGCAGTC
CCCAAGAAAAAGACGAAACCATCATCGGACGATGGTGATGACGGTTGTAT
CGACTCTCGGTTAATCGTAGTACCAGCAACGAGCGTGACTGAGGATGGCA
TGGCGACGGGGACAGCAATGGCGATGGCGACGGCAAGTGACGTCGCCACC
GCTGGTACTGCGGACTTGGCACAGGAGGGAAGTTGTATTTTTAGTAGTAG
TAGTAATAGTAGCTGTAGTAGTAGGGATAGTGCTAGGGGTCGAAGTGCAG
GGAACGACATTTCGTGTATGGTCGGGACGACGGGTCGTGAGCAAGCCGGC
GGTGATGGTCCTTCTGCTTCCACTTCAATAGAGTGCAACCGGCAAACTGA
ACCCACTTCTTGTGGTGGAACAGTCGACGACGGCCCTGGTGATATCGTTT
CTGCTACCGCTGGTGAAGCGCAAGCGACAATTGTGACGAAGAAAATTGTT
AGCAGTGGTGGTAGCACTGGCCAGCGTGTCCCCACCGCGACCGATGCTAG
CATCGCTGCTGGTGCTATTGTTTCTGCTGCTTGTGTTCCTTTGGAGGGTG
GTGGGGTTGGCGCTATTGATGGTCGTGGCGGTGATCAGTGCGGGGGGCTC
GGGGGGGAACGCGAATGCGATAATTTTGTGCAAGCGGGTACGGGGCTTGC
TACGGATAGCGCGGACACCGGTGGCGGTGGCGGCGGTGGTAGCGATGGCG
GCATGGGAGGACTATTGTCGCAGAGTAGCAGGGTGTCTCCTGTATTGTCG
GCTGGTGTTGCGGGGGCAGGGTTGATGACGGGCACCTAGGATAGGACACG
TGTGAATGGATCATCAGATCTTTTTCCTTTGTCGTTACGAACATACGAGA
AAATTTCACAGCAGGGAACGGATGAAGTGCATTATTCGACAATATTTGTA
TGCATGCTCACTCTTCAGTGCAATCACTCGCTCGCCCGGCTTGACCCAGC
TCGCGACGAGTGCAGTGTGCGGTTGGCACCTCGCAGTCAGGCGTTGGGTT
GGCAGATGGATTCATGGTGTATTCGGAAAAAAGTGATATTATTTGCGACA
TGTTTCAGCTTGTACATGATTTCATTCCGCCACGGGTGGAGAAATTTATG
AGGGATCGGCGCACTTGATTGTATATTATTCATATTTAGATGCCCGTGTT
TGCCGGCGCCTTTTATGTCAAGCCTCAGTATCGCTAGATTTTCAACGGAC
AAGTAGTCGGCTATGACCGACTATAATACTAGGTTTCATGACGGC

Coding sequence (CDS) from alignment at H-paniculata_contig14292:2452..4796-

>mRNA_H-paniculata_contig14292.2597.1 ID=mRNA_H-paniculata_contig14292.2597.1|Name=mRNA_H-paniculata_contig14292.2597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2550bp|location=Sequence derived from alignment at H-paniculata_contig14292:2452..4796- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGCTCTGGGGATATTGCAGAAGCACAGATGAAGGCTCTGGGGATA
TTGCAGAAGCACAGGCTTACGTCAACCGCAGCAGCCGTGAAAGCAGGGAC
GCACGGAGGCCAACGGGTGAAGGGAGCGACGGCAGCTACACCGGTAGGGG
CAATGGCAGAAGCTGCGGGGGGCAAGCGGCTTCGGACGGAGACAAGAATG
CCACAACAGCAGCAGCAACAACAACAACAAGATGTAGTCCTCGAGACACC
GAAAAAGAGAATACCGCAGCAAAAGGCGCCGATTGCAGATTGCAACAACC
CTCTTCCTCTCCACCCCAAAGCTTCCAGCTGGCCGAAAGCTTTGACGGCG
GACGTTCGGGTTACTGCTGCTGCTGCTACCGTTGTGATGACAGATGTAGA
CGAAGGAGCAGCAGAGGGGGTAGGAGGGGAGTCGCAGCGGCCCAGGGCAG
AGGCGGGTCAGGGGCGGGTCTGCGCTGGTAGTAGCGAGATACTGGAGATT
GGGAACGCCGTGGCAGTCCCCAAGAAAAAGACGAAACCATCATCGGACGA
TGGTGATGACGGTTGTATCGACTCTCGGTTAATCGTAGTACCAGCAACGA
GCGTGACTGAGGATGGCATGGCGACGGGGACAGCAATGGCGATGGCGACG
GCAAGTGACGTCGCCACCGCTGGTACTGCGGACTTGGCACAGGAGGGAAG
TTGTATTTTTAGTAGTAGTAGTAATAGTAGCTGTAGTAGTAGGGATAGTG
CTAGGGGTCGAAGTGCAGGGAACGACATTTCGTGTATGGTCGGGACGACG
GGTCGTGAGCAAGCCGGCGGTGATGGTCCTTCTGCTTCCACTTCAATAGA
GTGCAACCGGCAAACTGAACCCACTTCTTGTGGTGGAACAGTCGACGACG
GCCCTGGTGATATCGTTTCTGCTACCGCTGGTGAAGCGCAAGCGACAATT
GTGACGAAGAAAATTGTTAGCAGTGGTGGTAGCACTGGCCAGCGTGTCCC
CACCGCGACCGATGCTAGCATCGCTGCTGGTGCTATTGTTTCTGCTGCTT
GTGTTCCTTTGGAGGGTGGTGGGGTTGGCGCTATTGATGGTCGTGGCGGT
GATCAGTGCGGGGGGCTCGGGGGGGAACGCGAATGCGATAATTTTGTGCA
AGCGGGTACGGGGCTTGCTACGGATAGCGCGGACACCGGTGGCGGTGGCG
GCGGTGGTAGCGATGGCGGCATGGGAGGACTATTGTCGCAGAGTAGCAGG
GTGTCTCCTGTATTGTCGGCTGGTGTTGCGGGGGCAGGGTTGATGACGGG
CACCTAGGCTTACGTCAACCGCAGCAGCCGTGAAAGCAGGGACGCACGGA
GGCCAACGGGTGAAGGGAGCGACGGCAGCTACACCGGTAGGGGCAATGGC
AGAAGCTGCGGGGGGCAAGCGGCTTCGGACGGAGACAAGAATGCCACAAC
AGCAGCAGCAACAACAACAACAAGATGTAGTCCTCGAGACACCGAAAAAG
AGAATACCGCAGCAAAAGGCGCCGATTGCAGATTGCAACAACCCTCTTCC
TCTCCACCCCAAAGCTTCCAGCTGGCCGAAAGCTTTGACGGCGGACGTTC
GGGTTACTGCTGCTGCTGCTACCGTTGTGATGACAGATGTAGACGAAGGA
GCAGCAGAGGGGGTAGGAGGGGAGTCGCAGCGGCCCAGGGCAGAGGCGGG
TCAGGGGCGGGTCTGCGCTGGTAGTAGCGAGATACTGGAGATTGGGAACG
CCGTGGCAGTCCCCAAGAAAAAGACGAAACCATCATCGGACGATGGTGAT
GACGGTTGTATCGACTCTCGGTTAATCGTAGTACCAGCAACGAGCGTGAC
TGAGGATGGCATGGCGACGGGGACAGCAATGGCGATGGCGACGGCAAGTG
ACGTCGCCACCGCTGGTACTGCGGACTTGGCACAGGAGGGAAGTTGTATT
TTTAGTAGTAGTAGTAATAGTAGCTGTAGTAGTAGGGATAGTGCTAGGGG
TCGAAGTGCAGGGAACGACATTTCGTGTATGGTCGGGACGACGGGTCGTG
AGCAAGCCGGCGGTGATGGTCCTTCTGCTTCCACTTCAATAGAGTGCAAC
CGGCAAACTGAACCCACTTCTTGTGGTGGAACAGTCGACGACGGCCCTGG
TGATATCGTTTCTGCTACCGCTGGTGAAGCGCAAGCGACAATTGTGACGA
AGAAAATTGTTAGCAGTGGTGGTAGCACTGGCCAGCGTGTCCCCACCGCG
ACCGATGCTAGCATCGCTGCTGGTGCTATTGTTTCTGCTGCTTGTGTTCC
TTTGGAGGGTGGTGGGGTTGGCGCTATTGATGGTCGTGGCGGTGATCAGT
GCGGGGGGCTCGGGGGGGAACGCGAATGCGATAATTTTGTGCAAGCGGGT
ACGGGGCTTGCTACGGATAGCGCGGACACCGGTGGCGGTGGCGGCGGTGG
TAGCGATGGCGGCATGGGAGGACTATTGTCGCAGAGTAGCAGGGTGTCTC
CTGTATTGTCGGCTGGTGTTGCGGGGGCAGGGTTGATGACGGGCACCTAG

mRNA_H-paniculata_contig14292.2597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

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POSITION

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