mRNA_H-paniculata_contig14247.2576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	2077
Cds size	1137
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig14247.2576.1	prot_H-paniculata_contig14247.2576.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig14247 4833..5969 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929134.2305999-UTR-H-paniculata_contig14247:2908..3261	1622929134.2305999-UTR-H-paniculata_contig14247:2908..3261	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14247 2909..3261 +
1691480744.1828449-UTR-H-paniculata_contig14247:2908..3261	1691480744.1828449-UTR-H-paniculata_contig14247:2908..3261	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14247 2909..3261 +
1622929134.2492177-UTR-H-paniculata_contig14247:4214..4537	1622929134.2492177-UTR-H-paniculata_contig14247:4214..4537	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14247 4215..4537 +
1691480744.1915045-UTR-H-paniculata_contig14247:4214..4537	1691480744.1915045-UTR-H-paniculata_contig14247:4214..4537	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14247 4215..4537 +
1622929134.2654166-UTR-H-paniculata_contig14247:4568..4832	1622929134.2654166-UTR-H-paniculata_contig14247:4568..4832	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14247 4569..4832 +
1691480744.1994169-UTR-H-paniculata_contig14247:4568..4832	1691480744.1994169-UTR-H-paniculata_contig14247:4568..4832	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig14247 4569..4832 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929134.2796557-CDS-H-paniculata_contig14247:4832..5969	1622929134.2796557-CDS-H-paniculata_contig14247:4832..5969	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig14247 4833..5969 +
1691480744.2072694-CDS-H-paniculata_contig14247:4832..5969	1691480744.2072694-CDS-H-paniculata_contig14247:4832..5969	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig14247 4833..5969 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig14247:2909..5969+
coding sequence from alignment at H-paniculata_contig14247:2909..5969+

protein sequence of mRNA_H-paniculata_contig14247.2576.1

>prot_H-paniculata_contig14247.2576.1 ID=prot_H-paniculata_contig14247.2576.1|Name=mRNA_H-paniculata_contig14247.2576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=379bp
MAEQQQSSPLSRPMSDTTSIPNASPSRHPSAAPSQPQYVLNAQQREVLRS
QMATFSKLAQNMDQAKSELARLHAHKEMAAQQQQAAAAQKVAAAAAAVAA
RAPPPANPQTVSIQLPPLPRQLQQAQRQQQRGGGAILPSGSSSPSALLPE
SSPSGISQHGSRQQVHSSVLPPLINPSSAGLPLRAPSSPRDGNDSLRAVA
NGLSPRGSSVVGGDGGSNAGVGSAGGALGSAPAADGGSAVHLTSIKSTGS
IGSTDGDALQQPSIAAMAGRNESATGGADFPAGLASSAAESGGGGLGLDS
GRFQGIGNVDTSPLPPLSAITGGTDQPLRAPMSGADVVLGRGGVGTGSAP
ALAESSAGIVRRGSSPGGATSSSLAQEGG

mRNA from alignment at H-paniculata_contig14247:2909..5969+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig14247.2576.1 ID=mRNA_H-paniculata_contig14247.2576.1|Name=mRNA_H-paniculata_contig14247.2576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3061bp|location=Sequence derived from alignment at H-paniculata_contig14247:2909..5969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAGCGAGTGGGGACGGCGGGGACTGTGCAAAGCAGGAGGCTCTGGAGA
TATATTTATCTCACCAAGAATGCAGGCACATAGCAAGGTCTGGTTCTGCC
ATTGTCCCCCGTAAAAGAGATATCGGGCCTCCAAAAGTCGATAGTTGTGT
TCGCACAAAGTACTGAACCGTTGTACCGACTGTTTTGAGAGCACCAACAC
GTTTGAGTTGCAAGTGCAATGGAGGAACACGGCATGAGAGGCGGCGGCAG
TGTTGGCGGCGGTGCCGACCATGGTTTCCGAGACAACTTGGCACGGCAAT
CTCCTTCCATCGGCGATCTCCAGGACCCGCAGCACGAGGACCAACAGAAC
ACGGTGCGCCTAACTAGTTTGTGTTGTTACCAGGACTTTTAAAAATCAAA
ATGGCGCCCCAGCAACGCAAGTAAGTCTTGTGCCAAAAATAGTTACTCCA
TGCACACCTGATCCTGTCAGTAATGCGTGTAAAATAGATGTGCAGCCGTC
AAGACGGCGCTGCCGCAGAGTAATGTGATCATCCCGTGATGCCTGGGTGT
GCCATCGGGAGCATAAATTCTACTGTGGAGGCTAAATATGCGGAATGTAT
TCCCCCTCATGTTCTGTCTCAATGTATCTTGCTAAGGGGTATTCTATATT
CTAGCAAACCGATATTTGAAAATATAAAATAAACATTGAAACATACTCGA
CACTGTACCTCTTCAACAACAGGGAGAGCGATACGTTTTGAATATAGCAC
AATATAATATGGGTCCTACTCGCGGGGAGCGGGGGTGTGTCGTTCTACCT
CGCACGAGGAAGACTTAATCTATTTAGCTTCACGGAGCGTGGGACGCGTC
TCGTATCGACAGGGTTTTGTCTCGTCGGAAGCAAGCCAGACCGAAGCGTA
TGACAATAACCCAGATGCGTTGGAACTATCCCAAAAAGACGAGGCAGTTA
TCATACAGAATGAGGCGTGCTGGATATAGCGGGGGCTATCTATTCCAACA
ATTTGAATTCATTTCGTAGACTGGCAGCCTGTCGAGGATGTAAGCGAAAG
CGTAGACCTGATTTATAGCGTCGATCCCCTGACTACCGCAGTAGATGTTA
ATGCCTTTCACTCGTATATCCTGCCGAGTTTGAAGAATCCACGCCGCCGT
GCATGTTTAGGGCGTCCCGCGGTAGGAGGCTCCAACACATGTGGTATCTG
GCGTTGTTTCGACTTACCTGGCACCCTGGAACCCAGGAAAGCTTTCGTTT
GAATTCTCTCCGTTCTGCTCTCTGTTTGTGTTTGCCCTTCTCGCGCTTTC
CGAAAGCTCATCGAGCAGCAGCGATACCAGATGGCGTTCCAGATTCATCA
ACAGCAGCAGCATCAGAGGCAGCCACAGCAGCAGCAAGCGACTTCACCAC
ACCAACGGCATGGCGCATTCCCTCCTCCTCCGCCGCCCCCTCTTCAAGCG
GCGCAGCAGGAGGGTAACCAGCTTCCGAGCCTGCCACAGGGTAGCACCTT
GCAGCAGCTGTACATGCAACAGCAGGTGCAGCAAAGGGCACAGCAGAAGC
TGACGGAGTCGCACCTCCAGCAGGCGAAATTTGCGGCAGCCAAGCAGCAT
CAACAACAACAATCAAAGAAACCGTCCACGCCGGCCCAACAGCAGCAACA
GCGTATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAATCACAGCAGC
CAATTGCGGGTCAGGGAATTGCGCAGCAAGTAAAGCAGCAGCAGCAACAA
CAGCCGCCGTTCTTGCAACAACAGCTGTTGCAGCAGCGGCAAGAGCAAGA
GCGTCGGCAGCAACAGCTGCTACTTATACAGAAGACACATCTCAGGCAAC
TAAAACATCGTGCCGACGAAGCCCGGCAGACTCAACCACGACACCACCAC
CGACAACAACAGCACAAACTCCCCATGGCCGAGCAGCAGCAATCCTCACC
ACTCTCACGCCCGATGTCGGATACCACAAGCATCCCAAACGCCAGCCCCA
GCCGTCACCCGAGTGCGGCACCGAGCCAACCTCAATATGTCCTCAACGCC
CAGCAGCGAGAAGTCCTGAGGTCACAGATGGCCACCTTCAGTAAGCTGGC
GCAAAACATGGACCAGGCGAAATCAGAACTCGCACGTTTGCATGCACATA
AGGAGATGGCCGCACAGCAACAACAAGCAGCCGCGGCGCAGAAAGTGGCG
GCAGCAGCCGCGGCGGTGGCGGCAAGAGCGCCTCCGCCGGCGAACCCACA
GACAGTATCGATACAATTGCCGCCCCTACCTCGACAGCTGCAACAAGCGC
AGCGACAGCAACAGCGAGGTGGTGGGGCGATCCTGCCATCTGGCTCGTCC
TCACCCTCTGCTCTTCTTCCGGAATCGTCGCCATCGGGAATTTCGCAGCA
CGGCAGCCGACAGCAGGTCCATAGTTCGGTTCTCCCTCCGCTCATCAATC
CCTCCAGCGCAGGATTGCCCCTTCGTGCGCCATCATCCCCGCGCGATGGC
AACGACAGCCTGCGTGCAGTCGCCAATGGACTGTCCCCTCGAGGCTCCTC
CGTAGTCGGTGGTGATGGTGGTAGTAATGCTGGTGTTGGAAGTGCTGGTG
GCGCTTTGGGAAGTGCGCCTGCGGCAGACGGAGGAAGTGCGGTACACCTG
ACCTCTATCAAGTCAACAGGCAGCATTGGTAGCACCGACGGTGATGCCCT
TCAGCAGCCTTCTATCGCGGCCATGGCCGGGAGGAACGAATCCGCGACAG
GAGGAGCAGATTTTCCTGCTGGCTTGGCTTCTTCGGCCGCCGAGAGCGGC
GGCGGCGGTCTTGGTCTTGACTCTGGTCGCTTCCAGGGCATCGGAAACGT
GGATACGTCGCCACTTCCGCCTCTGTCGGCGATTACAGGGGGAACAGATC
AACCGCTGAGAGCACCGATGTCGGGGGCGGATGTTGTCCTTGGCCGGGGC
GGCGTGGGCACTGGCAGTGCCCCCGCCCTGGCCGAAAGCTCGGCCGGTAT
TGTTAGACGTGGATCTTCGCCCGGAGGCGCAACTTCGTCATCGTTGGCGC
AAGAAGGGGGG

Coding sequence (CDS) from alignment at H-paniculata_contig14247:2909..5969+

>mRNA_H-paniculata_contig14247.2576.1 ID=mRNA_H-paniculata_contig14247.2576.1|Name=mRNA_H-paniculata_contig14247.2576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2274bp|location=Sequence derived from alignment at H-paniculata_contig14247:2909..5969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGAGCAGCAGCAATCCTCACCACTCTCACGCCCGATGTCGGATAC
CACAAGCATCCCAAACGCCAGCCCCAGCCGTCACCCGAGTGCGGCACCGA
GCCAACCTCAATATGTCCTCAACGCCCAGCAGCGAGAAGTCCTGAGGTCA
CAGATGGCCACCTTCAGTAAGCTGGCGCAAAACATGGACCAGGCGAAATC
AGAACTCGCACGTTTGCATGCACATAAGGAGATGGCCGCACAGCAACAAC
AAGCAGCCGCGGCGCAGAAAGTGGCGGCAGCAGCCGCGGCGGTGGCGGCA
AGAGCGCCTCCGCCGGCGAACCCACAGACAGTATCGATACAATTGCCGCC
CCTACCTCGACAGCTGCAACAAGCGCAGCGACAGCAACAGCGAGGTGGTG
GGGCGATCCTGCCATCTGGCTCGTCCTCACCCTCTGCTCTTCTTCCGGAA
TCGTCGCCATCGGGAATTTCGCAGCACGGCAGCCGACAGCAGGTCCATAG
TTCGGTTCTCCCTCCGCTCATCAATCCCTCCAGCGCAGGATTGCCCCTTC
GTGCGCCATCATCCCCGCGCGATGGCAACGACAGCCTGCGTGCAGTCGCC
AATGGACTGTCCCCTCGAGGCTCCTCCGTAGTCGGTGGTGATGGTGGTAG
TAATGCTGGTGTTGGAAGTGCTGGTGGCGCTTTGGGAAGTGCGCCTGCGG
CAGACGGAGGAAGTGCGGTACACCTGACCTCTATCAAGTCAACAGGCAGC
ATTGGTAGCACCGACGGTGATGCCCTTCAGCAGCCTTCTATCGCGGCCAT
GGCCGGGAGGAACGAATCCGCGACAGGAGGAGCAGATTTTCCTGCTGGCT
TGGCTTCTTCGGCCGCCGAGAGCGGCGGCGGCGGTCTTGGTCTTGACTCT
GGTCGCTTCCAGGGCATCGGAAACGTGGATACGTCGCCACTTCCGCCTCT
GTCGGCGATTACAGGGGGAACAGATCAACCGCTGAGAGCACCGATGTCGG
GGGCGGATGTTGTCCTTGGCCGGGGCGGCGTGGGCACTGGCAGTGCCCCC
GCCCTGGCCGAAAGCTCGGCCGGTATTGTTAGACGTGGATCTTCGCCCGG
AGGCGCAACTTCGTCATCGTTGGCGCAAGAAGGGGGGATGGCCGAGCAGC
AGCAATCCTCACCACTCTCACGCCCGATGTCGGATACCACAAGCATCCCA
AACGCCAGCCCCAGCCGTCACCCGAGTGCGGCACCGAGCCAACCTCAATA
TGTCCTCAACGCCCAGCAGCGAGAAGTCCTGAGGTCACAGATGGCCACCT
TCAGTAAGCTGGCGCAAAACATGGACCAGGCGAAATCAGAACTCGCACGT
TTGCATGCACATAAGGAGATGGCCGCACAGCAACAACAAGCAGCCGCGGC
GCAGAAAGTGGCGGCAGCAGCCGCGGCGGTGGCGGCAAGAGCGCCTCCGC
CGGCGAACCCACAGACAGTATCGATACAATTGCCGCCCCTACCTCGACAG
CTGCAACAAGCGCAGCGACAGCAACAGCGAGGTGGTGGGGCGATCCTGCC
ATCTGGCTCGTCCTCACCCTCTGCTCTTCTTCCGGAATCGTCGCCATCGG
GAATTTCGCAGCACGGCAGCCGACAGCAGGTCCATAGTTCGGTTCTCCCT
CCGCTCATCAATCCCTCCAGCGCAGGATTGCCCCTTCGTGCGCCATCATC
CCCGCGCGATGGCAACGACAGCCTGCGTGCAGTCGCCAATGGACTGTCCC
CTCGAGGCTCCTCCGTAGTCGGTGGTGATGGTGGTAGTAATGCTGGTGTT
GGAAGTGCTGGTGGCGCTTTGGGAAGTGCGCCTGCGGCAGACGGAGGAAG
TGCGGTACACCTGACCTCTATCAAGTCAACAGGCAGCATTGGTAGCACCG
ACGGTGATGCCCTTCAGCAGCCTTCTATCGCGGCCATGGCCGGGAGGAAC
GAATCCGCGACAGGAGGAGCAGATTTTCCTGCTGGCTTGGCTTCTTCGGC
CGCCGAGAGCGGCGGCGGCGGTCTTGGTCTTGACTCTGGTCGCTTCCAGG
GCATCGGAAACGTGGATACGTCGCCACTTCCGCCTCTGTCGGCGATTACA
GGGGGAACAGATCAACCGCTGAGAGCACCGATGTCGGGGGCGGATGTTGT
CCTTGGCCGGGGCGGCGTGGGCACTGGCAGTGCCCCCGCCCTGGCCGAAA
GCTCGGCCGGTATTGTTAGACGTGGATCTTCGCCCGGAGGCGCAACTTCG
TCATCGTTGGCGCAAGAAGGGGGG

mRNA_H-paniculata_contig14247.2576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

ZOOM

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POSITION

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