mRNA_H-paniculata_contig1404.2470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1404.2470.1
Unique NamemRNA_H-paniculata_contig1404.2470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: D8LQ52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ52_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 2.910e-154
Identity = 249/429 (58.04%), Postives = 289/429 (67.37%), Query Frame = 2
Query:  488 TLFFRVTGAAAVARLEPLLLNRPWQGGGVRWSPARTEAETVGVGPHGNRNGRAGVLDFVWETTVTKDRRRQHRSARVLNRLSGAQVLEDKANLAHLQRLMTIPTLESYVVTGRVEVERWADLRFRPATI---RPPRLPEIQE------------------------NTKWQSL---DGHEARGGWWCVKASGGNGGMDVWVVHEGNWRGVVERLHEAEEYVIQRYVERPLLWRGRKFHFRCYATISADMSAWLYRSAYILCASRPYTLG--DGR------------MEEMGLADELVHISNLAVNKRTKGHPGQIPCDIPSEYPLLWPGMLELLRSLVEAAAPFMEHQASVEHFEFLGLDIIADVTGGVWLIEVNRLPGLESSVQNLAQENSMYNSMMMDLVHLVVLPPLIGCPREPGLFEVGFLPSSG 1642
            TL FRVTGA++VARLEPLLL     G G R       + ++  G  G R      +DFVWETTVTK ++R+HR ARVLNRLSGAQVLEDKANL  LQRLMT PTLESY V GR  V RWA  RF+   +   RPP  P  +E                         T  +S    +GH     WWCVKA+GGNGG+D+WV+H+GNW+ V E L E E YVIQRYV RP+LW+GRKFHFR YA + ADMSAWLYR+AYIL ASRPY+LG  D R            M     ADE VHISNLAVNK T+GHPGQ+PCD+PSEY  LWP MLELL SLV+AA PFM+HQA+  HFEFLGLDIIAD  GGVWL+E NRLPGL+SS QNL +EN +Y+ MM+DL+ L+VLPPL GC  E GLFEV   P+SG
Sbjct:   66 TLTFRVTGASSVARLEPLLL-----GPGGRNQRPTIWSRSLDSGDDGVR------VDFVWETTVTKQQQRRHRDARVLNRLSGAQVLEDKANLVLLQRLMTAPTLESYAVNGRNAVARWAQQRFKEQNLPRDRPPPPPSTREAGYPHDDQFLARKRALVQGTSAATETTQESEAVGNGHAGEEDWWCVKAAGGNGGLDIWVLHKGNWKMVTEALSEHESYVIQRYVARPMLWQGRKFHFRAYALLRADMSAWLYRTAYILSASRPYSLGGNDSRDDGVRVGAGVADMHRAAFADEFVHISNLAVNKHTEGHPGQVPCDLPSEYGALWPKMLELLGSLVDAATPFMQHQANPNHFEFLGLDIIADSAGGVWLMEANRLPGLQSSKQNLEKENEVYDGMMLDLIRLLVLPPLTGCSPEQGLFEVAATPASG 483          
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: A0A7S2XVN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVN0_9STRA)

HSP 1 Score: 223 bits (568), Expect = 9.870e-65
Identity = 123/283 (43.46%), Postives = 170/283 (60.07%), Query Frame = 2
Query:  794 PTLESYVVTGRVEVERWADLRFRPATIRPPRLPEIQENTKWQSLDGHEARGG---------WWCVKASGGNGGMDVWVVHEGNWRGVVERLH--EAEEYVIQRYVERPLLWRGRKFHFRCYATISADMSAWLYRSAYILCASRPYTLGDGRMEEMGLADELVHISNLAVNKRTKGHPGQIPCDIPSEYPLLWPGMLELLRSLVEAAAPFMEHQASVEHFEFLGLDIIADVTGG-VWLIEVNRLPGLESSVQNLAQENSMYNSMMMDLVHLVVLPPLIGCPREP 1606
            PTL++++V  +  + RWA  R+          P    +T    + G +  G          WW VK S GNGG D+WV+++ N+R V+E +   + EE V Q YV RPLL+ GRKFHFRCYA ++A M  + Y  AYIL A+  Y     R+E+ G  D + HISN+AVNK   G+PGQ+P  +P++YP L+  M EL   ++  A+PF+  Q S+ HFEFLGLDI+AD     VWL+EVNRLPGL+SS  N A+E+  YN+MM   + ++V P L   P EP
Sbjct:    1 PTLKTFIVRDKDGLRRWARERWGDPESSEV-APADNASTTTNQVSGAQPVGDGGGAGEGSDWWMVKVSKGNGGSDIWVINQQNFRAVLEDISAVKEEELVCQEYVARPLLFHGRKFHFRCYALLAASMQGFFYDRAYILAATNQY-----RLEQPG--DAMTHISNMAVNKHMAGYPGQVPTHLPTDYPQLFERMKELYSEVIRVASPFLAVQRSLSHFEFLGLDIMADADASRVWLLEVNRLPGLQSSKSNQAEEDVTYNTMMSAAMEMLVYPVLKLQPGEP 275          
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: A0A482RWA3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWA3_9ARCH)

HSP 1 Score: 224 bits (572), Expect = 5.230e-64
Identity = 145/392 (36.99%), Postives = 211/392 (53.83%), Query Frame = 2
Query:  497 FRVTGAAAVARLEPLLLN-------RPWQGGGVRWSPARTEAETVGVGPHGNRNGRAGVLDFVWETTVTKDRRRQHRSARVLNRLSGAQVLEDKANLAHLQRLMTIPT-LESYVVTGRVEVERWADLRFRPATIRPPRLPEIQENTKWQSLDGHEARGGWWCVKASGGNGGMDVWVVHEGNWRGVVERLHEAEEYVIQRYVERPLLWRGRKFHFRCYATISADMSAWLYRSAYILCASRPYTLGDGRMEEMGLADEL-VHISNLAVNKRTKGHPGQIPCDIPSEYPLLWPGMLELLRSLVEAAAPFMEHQASVEHFEFLGLDIIA---------DVTGGV---WLIEVNRLPGLESSVQNLAQENSMYNSMMMDLVHLVVLPPLIGCPREPG 1609
            +R+TG  +V RLEPLL          P+Q      +   T A+ +G               FVWET   K     H  A VLNRL    +LE K+N A+L  L+     LE++V     E+  W + R+  A +     P   ++      DG + R  WW VK S GNGG DV +++  NWR V++ L   EE V+Q  V RPLL++GRKFHFRCYA +  DM+A+L+R  +IL +S PY   +        A  L +H++NL++NK+  GHPGQIPC++P++YP ++  +  L   +V+AA P++  Q S  HF+F GLD++          D +G V    +IE+NRLPGLESS  N   E+++Y+ MM   + +V+ P +    R  G
Sbjct:    7 YRITGKRSVERLEPLLHQIHPALKFLPYQNCDSLANEGSTCAQRMG---------------FVWETYCEKTYWELHNRAVVLNRLHNNAILESKSNFAYLGHLVQEHRMLETFVARNSEELLNWIERRWGSAAV-----PRDGDD------DGDDERD-WWAVKVSAGNGGRDVHIMNRQNWRYVLQGLPN-EEAVLQECVPRPLLYQGRKFHFRCYALLMGDMAAYLHRHCFILTSSLPYNPLEPCTSSEQYASRLRMHVTNLSINKKFTGHPGQIPCNLPADYPDVFLRLSSLWAEIVQAARPYLRCQRSRRHFDFYGLDVVCSRPSSAHHNDDSGAVSEVHVIELNRLPGLESSALNTQAEDALYDEMMRQALRIVLAPEISMSRRTTG 370          
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: W7TQE7_9STRA (Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQE7_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.220e-51
Identity = 146/410 (35.61%), Postives = 204/410 (49.76%), Query Frame = 2
Query:  485 TTLFFRVTGAAAVARLEPLLLNRPWQGGGVRWSPARTEAETVGVGPHGNRNGRAGVLDFVWETTVTKDRRRQHRSARVLNRLSGAQVLEDKANLAHLQRLMT-----IPTLESYVVTGRVEVERWADLRFRPATIRPPRLPEIQENTKWQSLDGHEARGGWWCVKASGGNGGMDVWVVHEGNWR-GVVERLHEAEEYVIQRYVERPLLWRGR-KFHFRCYATI-----------SADMSA-------WLYRSAYILCASRPYTLGDGRMEEMGLADEL---VHISNLAVNKRTKGHPGQIPCDIPSEYPLLWPGMLELLRSLVEAAAPFMEHQASVEHFEFLGLDIIA-------------DVTGGVWLIEVNRLPGLESSVQNLAQENSMYNSMMMDLVHLVVLPPLIG 1591
            T L +R+TGAAA AR+ PLL  R      V W   R +       P          LDFVWET V +  +  H  ARVLNRLS   +LE+KA  +H+  L++     IP LE+ VV   ++ + W D R R       +L  +Q        D  E    WW +KA+G NGG DV V+            L   + YV+QRY+ RPLL   + KFH+R YA +           S D  A       W+Y+  +IL AS  Y        + G A+E+    H++NL++NK   G+PGQ+P D+ +  P  +  M     ++V AAAPF+  QAS  HFE  GLD +              D    ++L+E+NRLPGL+SS QN A E+ +Y+ M+ +L+ L V+P L G
Sbjct:   20 THLIYRITGAAAQARIVPLLQERAE----VHWIAGRCQNACNQADP-------PVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKAYFSHILALVSSQNQDIPVLETAVVRA-MDAQAWLDARRR-------QLRTVQNANYTVFTDCTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGRTSVDREARRARFQPWIYQHGFILRASERYH----HATKCGSANEIDAAAHLTNLSLNKHCPGYPGQLPIDL-ARAPRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDYLPVEAACAPEDMMHLDKFDSMYLMEINRLPGLQSSRQNSADEDELYDCMIRELLDLCVMPFLSG 405          
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: A0A7S3Y052_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y052_HETAK)

HSP 1 Score: 149 bits (377), Expect = 1.220e-38
Identity = 79/152 (51.97%), Postives = 99/152 (65.13%), Query Frame = 2
Query: 1142 MSAWLYRSAYILCASRPYTLGDGRMEEMGLADELVHISNLAVNKRTKGHPGQIPCDIPSEYPLLWPGMLELLRSLVEAAAPFMEHQASVEHFEFLGLDIIADVTGGV-WLIEVNRLPGLESSVQNLAQENSMYNSMMMDLVHLV-VLPPLIG 1591
            +  + Y  AYIL A RPY LG         +D+L HISN+AVNK   G+PGQIPC +P E+P LW  M E+   LV AAAPF++ QA+  HFEF GLD +AD  G   WL+EVNRLPGL++S  N A E+ MYN M+ DL+ L+ V  PL G
Sbjct:    7 LQPYFYEMAYILTAMRPYRLG-------APSDDLRHISNMAVNKHEAGYPGQIPCRVPVEFPALWASMTEVWAELVRAAAPFLQVQANARHFEFYGLDFLADADGETAWLLEVNRLPGLQASAANKAAEDQMYNKMIADLLELIGVSLPLEG 151          
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: A0A835Z2B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B8_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.310e-38
Identity = 116/320 (36.25%), Postives = 146/320 (45.62%), Query Frame = 2
Query:  491 LFFRVTGAAAVARLEPLLLNRPW--QGGGVRWSPARTEAETVGVGPHGNRNGRAGVLDFVWETTVTKDRRRQHRSARVLNRLSGAQVLEDKANLAHLQRLMTIPTLESYVVTGRVEVERWADLRFRPATIRPPRLPEIQENTKWQSLDGHEA---------------------------------------RGG------WWCVKASGGNGGMDVWVVHEGNWRGVVERLHEAE-----EYVIQRYVERPLLWR---GRKFHFRCYATISADMSAWLYRSAYILCASRPYTLGDGRMEEMGLADELVHISNLAVNKRTKG 1285
            L +RVTGA AV+R+ P+L       +G  V W  A +  E                LDFV+ETTVTKD +  HR A VLNRL G+ VLEDKA+ A L R M  P LES++V G   VE WA  R+ P         E     +        A                                       RG       WWCVKA+ GNGG DVWV+H GN + +V +L          YV+QRYV RPLL     G K HFRC+  +  D+SAWL+  A +L A  PY L D         +  +H++NLA +KR  G
Sbjct:   11 LRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDER---------------LDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRGAPPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHFRCFGVLRGDLSAWLHAGACVLRARAPYALSDA-------GNPSIHLTNLAFSKRPGG 308          
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: A0A4D9DE03_9STRA (ADP,ATP carrier protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DE03_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.310e-26
Identity = 92/274 (33.58%), Postives = 134/274 (48.91%), Query Frame = 2
Query:  827 VEVERWADLRFRPATIRPPRLPEIQENTKWQSLDGHEARGGWWCVKASGGNGGMDVWVVHEGNWR-GVVERLHEAEEYVIQRYVERPLLWRGR-KFHFRCYATI-----------SADMSA-------WLYRSAYILCASRPYTLGDGRMEEMGLADEL---VHISNLAVNKRTKGHPGQIPCDIPSEYPLLWPGMLELLRSLVEAAAPFMEHQASVEHFEFLGLDIIA-------------DVTGGVWLIEVNRLPGLESSVQNLAQENSMYN 1540
            ++ + W + R R       +L  +Q +      D  E    WW +KA+G NGG DV V+            L   + YV+QRY+ RPLL   + KFH+R YA +           S D  A       WLY+  +IL AS  Y        + G A+E+    H++NL++NK   G+PGQ+P D+ +  P  +  M     ++V AAAPF+  QAS  HFE  GLD +              D    ++L+E+NRLPGL+SS QN A E+ +Y+
Sbjct:    1 MDAQAWLNARRR-------QLRTVQNSNHTAFTDYTEDAEEWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQRYITRPLLLEKKYKFHYRVYALLRMTGVEETGHTSVDGEARRARFQPWLYQHGFILRASERYH----HATKCGSANEIDAAAHLTNLSLNKHCPGYPGQLPIDL-ARAPRTFGCMKAHWAAVVRAAAPFLRAQASSGHFELFGLDFLPVEPARAPEDMMRLDEFDSMYLMEINRLPGLQSSPQNSADEDGLYD 262          
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: F0XVE3_AURAN (Aminotran_5 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVE3_AURAN)

HSP 1 Score: 99.8 bits (247), Expect = 2.940e-18
Identity = 92/324 (28.40%), Postives = 141/324 (43.52%), Query Frame = 2
Query:  647 GVLDFVWETTVTKDRRRQHRSARVLNRLSGAQV-LEDKANLAHLQRLMTIPTLESYVVTGRVEVERWADLRFRPATIRPPRLPEIQENTKWQSLDGHEARGGWWCVKASGGNGGMDVW-VVHEGNWRGVV--ERLHEAEEYVIQRYVERPLLWRGRKFHFRCYATISADMSAWLYRSAYILCASRPYTLGDGRMEEMGLADELVHISNLAVNKRTKGHPGQ--IP----CDIPSEYPLLWPGMLELLRSLVEAAAPFMEHQASVEH-FEFLGLDIIADVTGG---VWLIEVNRLPGLESSVQNLAQENSMYNSMMMDLVHLVVL 1576
            G  D +W  T +K  +   R     N ++GA+  LEDK  +  LQR M   TL S     R  +  W   +  PA                  LDG       W VK +  N G+ +W     G+   +   + +    E V+Q+Y+ERP+LWRGRK  FR YA +    S +LY  A     + PY          G A    H++N++VNK      G   +P     D+ + +P  +  M  +LRSL  A AP +   A+  + FE +G+D + D        WL+E N  P    S      E + ++++M+D++   V+
Sbjct:   59 GDADLIWLNTPSKAAKAACRDCAHYNHVAGARAALEDKCRMGELQRRMGERTLRSETFADRGALRAWV-AKHGPA------------------LDGG------WVVKDATANSGVGLWFAASPGDLAALAASDAVDARGEVVLQQYLERPMLWRGRKLQFRVYA-VWQGRSCFLYAGAMAQVCAAPYAAPVAGEALAGTA----HVTNVSVNKDADEAAGGAFVPERPILDLAAAHPAQFAAMKRVLRSLSRACAPGLAPAAAGRNRFELVGVDFLCDDDAADPHAWLVECNCPPNSAGSAAEGPIE-AFHHALMVDVLDRFVV 351          
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: A0A250XAH2_9CHLO (Histone acetyltransferase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAH2_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 4.420e-14
Identity = 61/195 (31.28%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  953 WCVKASGGNGGMDVWVVHE-GNWRGVVERLHEAEEYVIQRYVERPLLWRGRKFHFRCYATISADMSAWLYRSAYILCASRPYTLGDGRMEEMGLADELVHISNLAVNKRTKG-HPGQIPCDIPSEY------------PLLWPGMLELLRSLVEAAAPFMEHQASVEHFEFLGLDIIADVTGGVWLIEVNRLPGL 1495
            W VK +  N G  + V +  G+    ++R     ++VIQ+Y+E PLL  GRKF  R Y   + D S +LY  AY+  +S PY+L D       L++   H++N A+ K+    H  +  C +  E               +WP + E ++ L    +  +  +     FE LGLD + D  G V+LIEVN  P L
Sbjct:  117 WIVKPTSLNRGNGIEVYNSLGDIMDHLKRKPAGSKWVIQKYIEDPLLVGGRKFDIRAYVLCAHDGSVYLYHKAYVRTSSTPYSLED-------LSNRASHLTNDAIQKKLDSYHQYEDHCKLSLEQLQASVGPSIDVQGSVWPQLRESVKQLFSHVSKKLNPRNLSHSFELLGLDFMIDNNGQVYLIEVNTSPAL 304          
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Match: A0A835ZQ42_9STRA (Tubulin-tyrosine ligase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ42_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.540e-14
Identity = 69/206 (33.50%), Postives = 91/206 (44.17%), Query Frame = 2
Query:  935 EARGGWWCVKASGGNGGMDVWVVHEGN-WRGVVERLHEAEEYVIQRYVERPLLWRGRKFHFRCYATISADMSAWLYRSAYILCASRPYTLGD-----------GRMEEMGLADELVHI---SNLAVNKRTKGHPGQIPCDIPSEYPLLWPGMLELLRSLVEAAAPFMEHQASVEH-FEFLGLDIIADVTGGVWLIEVNRLPGLESS 1504
            EARGGW  +KAS  N G  V +V + N  R VV   H+  E+V+Q Y+ERPLL  GRKFH R Y      +S +L+    +L A  PY  GD            R  E    DE   +   S+LA +    G  G    D  +    +   M  +   L  A        A + H FE  GLD + D    VWL+E N  P  + +
Sbjct:  181 EARGGW-ILKASTLNKGAGVHLVTDFNDLRDVVHANHDIREWVLQEYIERPLLVHGRKFHLRAYVLAVGCLSVYLFDRVLLLSAHAPYAAGDFSDPLAHITNTARQCETAAFDEAASVGLLSDLATHLTRDG--GMADGDAEAAVTGIVTAMRAITAELFRAFKGEFAVFAPLPHCFEHFGLDFMVDEALNVWLLEANPGPDFKQT 383          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1404.2470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ52_ECTSI2.910e-15458.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XVN0_9STRA9.870e-6543.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482RWA3_9ARCH5.230e-6436.99Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7TQE7_9STRA1.220e-5135.61Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis ga... [more]
A0A7S3Y052_HETAK1.220e-3851.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z2B8_9STRA2.310e-3836.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DE03_9STRA1.310e-2633.58ADP,ATP carrier protein n=1 Tax=Nannochloropsis sa... [more]
F0XVE3_AURAN2.940e-1828.40Aminotran_5 domain-containing protein n=1 Tax=Aure... [more]
A0A250XAH2_9CHLO4.420e-1431.28Histone acetyltransferase n=1 Tax=Chlamydomonas eu... [more]
A0A835ZQ42_9STRA7.540e-1433.50Tubulin-tyrosine ligase family-domain-containing p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1404contigH-paniculata_contig1404:21355..25172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score462.2
Seed ortholog evalue2.7e-127
Seed eggNOG ortholog2880.D8LQ52
Preferred nameTtll2
KEGG koko:K16608
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons5
Model size1642
Cds size1344
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1404.2470.1prot_H-paniculata_contig1404.2470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1404 21653..25172 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.0164285-UTR-H-paniculata_contig1404:21354..216521622929119.0164285-UTR-H-paniculata_contig1404:21354..21652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1404 21355..21652 +
1691480737.9982758-UTR-H-paniculata_contig1404:21354..216521691480737.9982758-UTR-H-paniculata_contig1404:21354..21652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1404 21355..21652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.0301743-CDS-H-paniculata_contig1404:21652..220961622929119.0301743-CDS-H-paniculata_contig1404:21652..22096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 21653..22096 +
1691480738.0105233-CDS-H-paniculata_contig1404:21652..220961691480738.0105233-CDS-H-paniculata_contig1404:21652..22096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 21653..22096 +
1622929119.044998-CDS-H-paniculata_contig1404:22524..228481622929119.044998-CDS-H-paniculata_contig1404:22524..22848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 22525..22848 +
1691480738.0201058-CDS-H-paniculata_contig1404:22524..228481691480738.0201058-CDS-H-paniculata_contig1404:22524..22848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 22525..22848 +
1622929119.0586286-CDS-H-paniculata_contig1404:23289..235201622929119.0586286-CDS-H-paniculata_contig1404:23289..23520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 23290..23520 +
1691480738.0292697-CDS-H-paniculata_contig1404:23289..235201691480738.0292697-CDS-H-paniculata_contig1404:23289..23520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 23290..23520 +
1622929119.0730486-CDS-H-paniculata_contig1404:24195..243731622929119.0730486-CDS-H-paniculata_contig1404:24195..24373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 24196..24373 +
1691480738.0391598-CDS-H-paniculata_contig1404:24195..243731691480738.0391598-CDS-H-paniculata_contig1404:24195..24373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 24196..24373 +
1622929119.0893574-CDS-H-paniculata_contig1404:25005..251721622929119.0893574-CDS-H-paniculata_contig1404:25005..25172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 25006..25172 +
1691480738.0495145-CDS-H-paniculata_contig1404:25005..251721691480738.0495145-CDS-H-paniculata_contig1404:25005..25172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1404 25006..25172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1404.2470.1

>prot_H-paniculata_contig1404.2470.1 ID=prot_H-paniculata_contig1404.2470.1|Name=mRNA_H-paniculata_contig1404.2470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=448bp
MSLECRPGSRKLPTAPTPEEAESTGPSPLHASPKHVELEHDTTTAAATLA
PTKLSLSPASTSTTLFFRVTGAAAVARLEPLLLNRPWQGGGVRWSPARTE
AETVGVGPHGNRNGRAGVLDFVWETTVTKDRRRQHRSARVLNRLSGAQVL
EDKANLAHLQRLMTIPTLESYVVTGRVEVERWADLRFRPATIRPPRLPEI
QENTKWQSLDGHEARGGWWCVKASGGNGGMDVWVVHEGNWRGVVERLHEA
EEYVIQRYVERPLLWRGRKFHFRCYATISADMSAWLYRSAYILCASRPYT
LGDGRMEEMGLADELVHISNLAVNKRTKGHPGQIPCDIPSEYPLLWPGML
ELLRSLVEAAAPFMEHQASVEHFEFLGLDIIADVTGGVWLIEVNRLPGLE
SSVQNLAQENSMYNSMMMDLVHLVVLPPLIGCPREPGLFEVGFLPSSG
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mRNA from alignment at H-paniculata_contig1404:21355..25172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1404.2470.1 ID=mRNA_H-paniculata_contig1404.2470.1|Name=mRNA_H-paniculata_contig1404.2470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3818bp|location=Sequence derived from alignment at H-paniculata_contig1404:21355..25172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCATCTACAACATACATCCGCTCCCACGCACATCCAAGGCTATCACA CAGCCTACGCGCGGTATTTCTTGTTTTTGGCTAGCCCAAAACGCCAAAAC TTTTATAGTGGTATAGACAGACTTAATACTTGTATGTGCAAGAGTTTTTG GTATTGTAGATCGGTCACTGGCTAGCTCCGGATCGTATGTGTCAGTACAC CGTTGACTGATTCGATCGTGCCAACAGTCAGTTAGTATCCTACGATCTTC GCTCTACTGTCTGTTGACTATCTCTTTTTGCGCGGGGCGACAGACAACAT GAGCCTCGAGTGCCGCCCTGGGTCTCGCAAGTTGCCAACTGCCCCTACAC CTGAAGAGGCGGAATCTACCGGACCATCTCCGCTGCATGCCTCCCCCAAA CACGTTGAACTCGAACATGATACGACCACAGCAGCAGCGACCTTGGCACC TACAAAGTTGAGCTTGTCACCAGCATCGACATCCACCACATTGTTCTTCC GAGTTACGGGGGCCGCAGCGGTAGCTCGTTTGGAGCCCCTGTTGCTCAAC AGGCCATGGCAGGGAGGTGGAGTAAGGTGGTCACCGGCAAGAACGGAGGC AGAAACCGTAGGTGTCGGTCCTCATGGAAATAGAAACGGTAGGGCGGGTG TGCTGGACTTCGTATGGGAGACCACGGTGACCAAGGACCGGAGGCGGCAA CATCGTAGCGCTCGAGTGCTCAATAGGCTAAGCGGGGCACAGGTGGAGCG CATAGCAAGTGTAGTGTTCCGGACTGAACTATGATTTGAATAGGTGTCGA CGCCGAGTGACTGCAACGCTGCACATTTTCCATGCAGTTCGGGAGGTTGG TGAAAACGTTTCGGGCAAATACGCGACCGTGTGCCACTACTAGATTAGCT GTGTCTATAAATGAAACTAGTATGTATGCTGCTAGTTGCTACGTAACACC GCAATAACCCTATTAGTAGAGTCTTGACTTCCTTTCGCGATGATTCCCGA TGTTAGGGGCGTTGCATTAATCAACGAAATATCCACAACTCATCGCACAC GCGTCGCTCCTCTTTTTTGGTCGAAGCGTACTGTATGTACACGCGGAAAT ATTTTGTCCGAGAAAGTGTATCTGAGTTTGTTCATGCATTTGGGGATGCT TTCGAGTGATCGTTTCTCAGGTATTGGAGGACAAAGCCAATCTTGCACAT CTCCAGCGTTTGATGACAATTCCAACCCTCGAGTCGTACGTCGTAACGGG AAGGGTGGAAGTCGAACGCTGGGCTGACCTTAGGTTTCGGCCTGCCACCA TTAGACCACCCCGGCTGCCAGAAATCCAAGAGAATACAAAGTGGCAATCA CTGGATGGCCACGAAGCGCGGGGCGGGTGGTGGTGCGTCAAAGCTTCAGG AGGCAACGGTGGAATGGATGTGTGGGTGGTGCATGAGGGGAATTGGAGAG GGGTGGTAGAGCGACTTCACGAGGCCGAAGAATACGTCATTCAGGTGTTG AACGGTTGTCGCCTTTGTCGTTATCCAGGAGTCAACGTTTGACAATCCTT GTGGTGTCGAGACTCAGGTATGTCCTGTTGATTGACCATTATGACGCCCA GTTATCGATCGACAGGTGAAACAATTGTCGCTTGCAAAGGTGGAAGGTTT CCTGTTTGTTTAGCTTTACCTCCTGTTGGATTCTTGCGGTTCTGTCAGCA CTTATACCAATGCGTAACATTCTAGTCATCAGTCTCCGTGCTTCCGGAAA CTCTGAACAGGTCTGCCGATCAAGCAGCGTGCTAGATTCCACGGTAAGCA GAAAAAATTTCATATAAAGAAAACGCAAACACAGTAGCTCTGTTTTTCTT CTCACGAGTATTTGCTCTTTCGTGTCGGTGTGTATTTCCTGCTCACAGTA CCGCTTCCGCTCTATTTGTGCTTTAATTTGATCAGCGGTACGTGGAAAGA CCACTGCTCTGGAGAGGGAGGAAGTTCCACTTTCGGTGTTACGCTACAAT CTCTGCCGACATGTCTGCGTGGCTGTACCGTAGTGCCTACATTCTGTGCG CCAGTCGACCGTACACGCTAGGAGACGGGAGAATGGAAGAAATGGGCTTG GCAGATGAACTTGTTCACATCAGCAACCTCGCGGTTAACAAGCGTACCAA AGGTCACCCTGGGCAGGTCAGTGGCCCAATAGGCTTTGTGCGTAGGCTGG GCTGGGCTTTGCACCGCTCTTGGACCTTTTTGTCCCTATTTACCGAGCTT CCTATATTATATACATAGCTAGCCGCGCGCGCGTGCAGGGCTAGTTGAGC ATGCGGCACGAGACGATGCTGCCGTGGATTCCTTGAACAACCAGCTTGAA CAAATGTGCTCACCGGCATCTTGCTTTTTGTTATTGACTGCTGTTTGGTC GCATGAATTTTTGATCGGTTAAATAAATATCGCTTCACCACTTTTGCTGT TGCAGCATCTGTCCCCTTTCTTCGCCGAACAGCTTGGTTCGGAAGTTTCT TTTTGCTCGCAAGCGACGCCTTGAGTAGTCACTCTTATGGGGAATTGTTA TTGTGTTCTGGTGCCCCTCGCAGGTCCACCGCCTGCCCGCAACGCTATGT GAATGTATAGCATAGAGCGAAAGCTATAATCCTCAATACCGAGACCGTGT TGGTGTTTTAGCTGGGCTTGTGCTTGTCTCTACTTCACAGCGGAGCCACA ATTACTGTAGTGAACGTCGGGATGTGACAGGTCGGATAAAACAATAGCAT GGCACTACTTTGAGGTTGCCTTTGTAATTCTCAAACGTGAACAACCTGCC GAAAATATTAACCGTAATGTCACCGTTATTTTTCAGCACAGATTCCTTGC GACATCCCTTCCGAGTATCCTCTACTGTGGCCGGGGATGCTTGAGCTGTT GCGTTCCCTCGTAGAAGCGGCAGCGCCGTTCATGGAGCATCAGGCTAGCG TAGAGCACTTCGAGTTTTTGGGGCTGGATATTATCGCCGATGTAACAGGG GGGGTCTGGCTCATCGAAGGTAACTGACTGTCCTTCCCGTCAGGATCATG TTGCCTGTGCTTTCGCGTATATATACGCAGATATACGTCACCGTTGAGAG CGATGAATGTACCGTACGACCTTGGTGGCGCGGTTGCCAATTTGGTTGAG ACACGTGCATAAGCGCGGAGCCGAAGCTTGCCACGAGTGGGGTTTTGGCC TGCAACTGCAAACATTGCATAGATTTTTCCCGCAGCTTGTGCTGTTGCTA GCACACTCGATAATCAGTGTCGTTCGCCGAGAGAAGAATGCTGGCTAGTG GTCGATATTTGCAACGGATCCGTGATCGCTTTTGTTTTCTTCAACACGTA GGTTGAATACCCCAGACCCGCAGCCAGAGCATAGAAATTCGTGGGCCCTC TTCTACACTGATAACACGAACAGCGAAATTACCGCTGTTGGGTTGATGGT CGTTTTTATACCTTTATCCTGACGAAAATCGGATCGTTCATGCCTCACCC ACAGCAAATCTGTACTTTACCCCGTATACTAAACAATACGAATAACACCA TTCAATAAACGAATGATAGAACGAGAGTTGCAAGTTGCTCTGCAAGTCTT GTCTGTCCGGTATTACACATCTATACATCTTGACTGGTTTGTCCTTCGCA GTAAATCGTCTACCGGGTCTGGAAAGCTCGGTACAGAACTTGGCACAAGA GAACAGCATGTACAACTCGATGATGATGGATCTTGTACATCTTGTCGTGC TACCTCCATTGATTGGATGCCCCCGAGAGCCAGGCCTTTTCGAGGTAGGT TTTCTACCGTCCTCTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1404:21355..25172+

>mRNA_H-paniculata_contig1404.2470.1 ID=mRNA_H-paniculata_contig1404.2470.1|Name=mRNA_H-paniculata_contig1404.2470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2688bp|location=Sequence derived from alignment at H-paniculata_contig1404:21355..25172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCTCGAGTGCCGCCCTGGGTCTCGCAAGTTGCCAACTGCCCCTAC
ACCTGAAGAGGCGGAATCTACCGGACCATCTCCGCTGCATGCCTCCCCCA
AACACGTTGAACTCGAACATGATACGACCACAGCAGCAGCGACCTTGGCA
CCTACAAAGTTGAGCTTGTCACCAGCATCGACATCCACCACATTGTTCTT
CCGAGTTACGGGGGCCGCAGCGGTAGCTCGTTTGGAGCCCCTGTTGCTCA
ACAGGCCATGGCAGGGAGGTGGAGTAAGGTGGTCACCGGCAAGAACGGAG
GCAGAAACCGTAGGTGTCGGTCCTCATGGAAATAGAAACGGTAGGGCGGG
TGTGCTGGACTTCGTATGGGAGACCACGGTGACCAAGGACCGGAGGCGGC
AACATCGTAGCGCTCGAGTGCTCAATAGGCTAAGCGGGGCACAGATGAGC
CTCGAGTGCCGCCCTGGGTCTCGCAAGTTGCCAACTGCCCCTACACCTGA
AGAGGCGGAATCTACCGGACCATCTCCGCTGCATGCCTCCCCCAAACACG
TTGAACTCGAACATGATACGACCACAGCAGCAGCGACCTTGGCACCTACA
AAGTTGAGCTTGTCACCAGCATCGACATCCACCACATTGTTCTTCCGAGT
TACGGGGGCCGCAGCGGTAGCTCGTTTGGAGCCCCTGTTGCTCAACAGGC
CATGGCAGGGAGGTGGAGTAAGGTGGTCACCGGCAAGAACGGAGGCAGAA
ACCGTAGGTGTCGGTCCTCATGGAAATAGAAACGGTAGGGCGGGTGTGCT
GGACTTCGTATGGGAGACCACGGTGACCAAGGACCGGAGGCGGCAACATC
GTAGCGCTCGAGTGCTCAATAGGCTAAGCGGGGCACAGGTATTGGAGGAC
AAAGCCAATCTTGCACATCTCCAGCGTTTGATGACAATTCCAACCCTCGA
GTCGTACGTCGTAACGGGAAGGGTGGAAGTCGAACGCTGGGCTGACCTTA
GGTTTCGGCCTGCCACCATTAGACCACCCCGGCTGCCAGAAATCCAAGAG
AATACAAAGTGGCAATCACTGGATGGCCACGAAGCGCGGGGCGGGTGGTG
GTGCGTCAAAGCTTCAGGAGGCAACGGTGGAATGGATGTGTGGGTGGTGC
ATGAGGGGAATTGGAGAGGGGTGGTAGAGCGACTTCACGAGGCCGAAGAA
TACGTCATTCAGGTATTGGAGGACAAAGCCAATCTTGCACATCTCCAGCG
TTTGATGACAATTCCAACCCTCGAGTCGTACGTCGTAACGGGAAGGGTGG
AAGTCGAACGCTGGGCTGACCTTAGGTTTCGGCCTGCCACCATTAGACCA
CCCCGGCTGCCAGAAATCCAAGAGAATACAAAGTGGCAATCACTGGATGG
CCACGAAGCGCGGGGCGGGTGGTGGTGCGTCAAAGCTTCAGGAGGCAACG
GTGGAATGGATGTGTGGGTGGTGCATGAGGGGAATTGGAGAGGGGTGGTA
GAGCGACTTCACGAGGCCGAAGAATACGTCATTCAGCGGTACGTGGAAAG
ACCACTGCTCTGGAGAGGGAGGAAGTTCCACTTTCGGTGTTACGCTACAA
TCTCTGCCGACATGTCTGCGTGGCTGTACCGTAGTGCCTACATTCTGTGC
GCCAGTCGACCGTACACGCTAGGAGACGGGAGAATGGAAGAAATGGGCTT
GGCAGATGAACTTGTTCACATCAGCAACCTCGCGGTTAACAAGCGTACCA
AAGGTCACCCTGGGCAGCGGTACGTGGAAAGACCACTGCTCTGGAGAGGG
AGGAAGTTCCACTTTCGGTGTTACGCTACAATCTCTGCCGACATGTCTGC
GTGGCTGTACCGTAGTGCCTACATTCTGTGCGCCAGTCGACCGTACACGC
TAGGAGACGGGAGAATGGAAGAAATGGGCTTGGCAGATGAACTTGTTCAC
ATCAGCAACCTCGCGGTTAACAAGCGTACCAAAGGTCACCCTGGGCAGAT
TCCTTGCGACATCCCTTCCGAGTATCCTCTACTGTGGCCGGGGATGCTTG
AGCTGTTGCGTTCCCTCGTAGAAGCGGCAGCGCCGTTCATGGAGCATCAG
GCTAGCGTAGAGCACTTCGAGTTTTTGGGGCTGGATATTATCGCCGATGT
AACAGGGGGGGTCTGGCTCATCGAAGATTCCTTGCGACATCCCTTCCGAG
TATCCTCTACTGTGGCCGGGGATGCTTGAGCTGTTGCGTTCCCTCGTAGA
AGCGGCAGCGCCGTTCATGGAGCATCAGGCTAGCGTAGAGCACTTCGAGT
TTTTGGGGCTGGATATTATCGCCGATGTAACAGGGGGGGTCTGGCTCATC
GAAGTAAATCGTCTACCGGGTCTGGAAAGCTCGGTACAGAACTTGGCACA
AGAGAACAGCATGTACAACTCGATGATGATGGATCTTGTACATCTTGTCG
TGCTACCTCCATTGATTGGATGCCCCCGAGAGCCAGGCCTTTTCGAGGTA
GGTTTTCTACCGTCCTCTGGCTAAATCGTCTACCGGGTCTGGAAAGCTCG
GTACAGAACTTGGCACAAGAGAACAGCATGTACAACTCGATGATGATGGA
TCTTGTACATCTTGTCGTGCTACCTCCATTGATTGGATGCCCCCGAGAGC
CAGGCCTTTTCGAGGTAGGTTTTCTACCGTCCTCTGGC
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