mRNA_H-paniculata_contig14028.2463.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14028.2463.1
Unique NamemRNA_H-paniculata_contig14028.2463.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.840e-31
Identity = 65/87 (74.71%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:   28 GSVRKTGRRDPFPNPKKQELKEEPSVKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            GSV     R      K  + +EEPSVKFLMLNP+VHFDEIV+KARA+VLVGGTMQPTGDLVRQLFSSVE SRV+VFSCGHVIP+ENL
Sbjct:  735 GSVGGXXXRGATAGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIPRENL 821
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BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: K3W6Y0_GLOUD (Helicase ATP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Y0_GLOUD)

HSP 1 Score: 92.0 bits (227), Expect = 1.160e-19
Identity = 37/65 (56.92%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   94 EPSVKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            E ++KF+++NP++HF+EIV+KAR+V+L GGTMQP   ++ QLFS +   R+D+FSCGHVIP +NL
Sbjct:  607 EGAIKFILMNPAIHFEEIVEKARSVILAGGTMQPVSQVIDQLFSKIPRDRIDLFSCGHVIPPKNL 671
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BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: A0A662X2D8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2D8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.580e-19
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:  103 VKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            +KF++LNP++HF E+V+KAR+V+L GGTMQP   ++ QLF+SV    VD+FSCGHVIP ENL
Sbjct:  600 IKFILLNPAIHFQEVVEKARSVILAGGTMQPVSQVIDQLFASVPREHVDLFSCGHVIPPENL 661
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BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: G4YIN4_PHYSP (Helicase ATP-binding domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=G4YIN4_PHYSP)

HSP 1 Score: 91.3 bits (225), Expect = 2.140e-19
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:  103 VKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            V+F++LNP +HF EIVKK+R+V+L GGTMQP   ++ QLFSSV    VD+FSCGHVIP ENL
Sbjct:  522 VRFILLNPVIHFQEIVKKSRSVILAGGTMQPVSQVIDQLFSSVPRESVDLFSCGHVIPPENL 583
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BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: W2PPV0_PHYPN (Helicase ATP-binding domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PPV0_PHYPN)

HSP 1 Score: 90.5 bits (223), Expect = 4.000e-19
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:  103 VKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            ++F++LNP +HF+EIVK++R+V+L GGTMQP   ++ QLFSSV    VD+FSCGHVIP ENL
Sbjct:  559 IRFILLNPVIHFEEIVKESRSVILAGGTMQPVSQVIDQLFSSVPRENVDLFSCGHVIPPENL 620
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BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: A0A0P1B2J3_PLAHL (DNA helicase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2J3_PLAHL)

HSP 1 Score: 90.1 bits (222), Expect = 5.460e-19
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:  100 SVKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            S++F +LNP+ HF +IV+KAR+V+L GGTMQP   ++ QLFSSV   ++D+FSCGHVIP ENL
Sbjct:  550 SLRFFLLNPAFHFQDIVQKARSVILAGGTMQPVSQVIEQLFSSVPIEKIDLFSCGHVIPPENL 612
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BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: A0A329SYA8_9STRA (Putative ATP-dependent DNA helicase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SYA8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.460e-19
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:  103 VKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            ++F++LNP +HF EIV+K+R+V+L GGTMQP   ++ QLFSSV    VD+FSCGHVIP ENL
Sbjct:  555 IRFILLNPVIHFQEIVEKSRSVILAGGTMQPVSQVIDQLFSSVPKENVDLFSCGHVIPPENL 616
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BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: A0A5D6Y0V7_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0V7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-18
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   94 EPSVKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            E ++KF+ +NP+VHF+EIV KAR+V+L GGTMQP   ++ QLF  V  +R+D+FSCGHVIP +NL
Sbjct:  600 EGAIKFIQMNPAVHFEEIVAKARSVILAGGTMQPVAQVIDQLFPFVPRARIDLFSCGHVIPPQNL 664
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BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: A0A4D9CWW8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWW8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-18
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 ATTGGADDPGSVRKTGRRDPFPNPKKQELKEEPSVKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            A TG + D   V +TG       P+K   +    +KF+MLN +VHF EIV +AR+VVLVGGTMQP   +V QLF  +  SR+DVFSCGHVIP +NL
Sbjct:  575 ALTGCSRDGRIVLETGH-----GPQKGRRQMAAGIKFIMLNAAVHFREIVSEARSVVLVGGTMQPVAPIVAQLFPDLPISRLDVFSCGHVIPPQNL 665
[Close]
BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Match: A0A3F2S1D7_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1D7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.360e-18
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:  103 VKFLMLNPSVHFDEIVKKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL 288
            +KF++LNP  HF E+V+K+R+V+L GGTMQP   ++ QLFSSV    VD+FSCGHVIP ENL
Sbjct:  327 IKFILLNPVTHFQEVVEKSRSVILAGGTMQPVSQVIDQLFSSVPKEDVDLFSCGHVIPPENL 388
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14028.2463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY7_ECTSI2.840e-3174.71Helicase ATP-binding domain-containing protein n=1... [more]
K3W6Y0_GLOUD1.160e-1956.92Helicase ATP-binding domain-containing protein n=1... [more]
A0A662X2D8_9STRA1.580e-1961.29Helicase ATP-binding domain-containing protein n=2... [more]
G4YIN4_PHYSP2.140e-1964.52Helicase ATP-binding domain-containing protein n=1... [more]
W2PPV0_PHYPN4.000e-1961.29Helicase ATP-binding domain-containing protein n=8... [more]
A0A0P1B2J3_PLAHL5.460e-1960.32DNA helicase n=1 Tax=Plasmopara halstedii TaxID=47... [more]
A0A329SYA8_9STRA5.460e-1961.29Putative ATP-dependent DNA helicase n=2 Tax=Phytop... [more]
A0A5D6Y0V7_9STRA1.020e-1858.46Helicase ATP-binding domain-containing protein n=1... [more]
A0A4D9CWW8_9STRA1.020e-1852.08Helicase ATP-binding domain-containing protein n=2... [more]
A0A3F2S1D7_9STRA1.360e-1861.29Helicase ATP-binding domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14028contigH-paniculata_contig14028:2452..4424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue7.5e-27
Seed eggNOG ortholog2880.D8LPY7
Preferred nameCHL1
KEGG koko:K11273
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1133@2759
EC3.6.4.13
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929115.2034104-CDS-H-paniculata_contig14028:2453..25851622929115.2034104-CDS-H-paniculata_contig14028:2453..2585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14028 2454..2585 -
1691480737.3065562-CDS-H-paniculata_contig14028:2453..25851691480737.3065562-CDS-H-paniculata_contig14028:2453..2585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14028 2454..2585 -
1622929115.2182233-CDS-H-paniculata_contig14028:4268..44241622929115.2182233-CDS-H-paniculata_contig14028:4268..4424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14028 4269..4424 -
1691480737.318243-CDS-H-paniculata_contig14028:4268..44241691480737.318243-CDS-H-paniculata_contig14028:4268..4424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14028 4269..4424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14028.2463.1prot_H-paniculata_contig14028.2463.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14028 2454..4424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14028.2463.1

>prot_H-paniculata_contig14028.2463.1 ID=prot_H-paniculata_contig14028.2463.1|Name=mRNA_H-paniculata_contig14028.2463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
ATTGGADDPGSVRKTGRRDPFPNPKKQELKEEPSVKFLMLNPSVHFDEIV
KKARAVVLVGGTMQPTGDLVRQLFSSVESSRVDVFSCGHVIPKENL
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mRNA from alignment at H-paniculata_contig14028:2452..4424-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14028.2463.1 ID=mRNA_H-paniculata_contig14028.2463.1|Name=mRNA_H-paniculata_contig14028.2463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1973bp|location=Sequence derived from alignment at H-paniculata_contig14028:2452..4424- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACTACAGGAGGTGCTGATGATCCGGGAAGCGTACGCAAGACAGGACG
GAGAGATCCTTTCCCAAATCCTAAGAAGCAAGAGTTGAAAGAAGAGCCAT
CCGTCAAGTTTCTCATGCTCAACCCTTCGGTGCACTTCGATGAGATCGTG
AAAAAGGTGAGAGATGATGACTGTATACTCTATGTATAGTACAACTCATG
CTAAAATGAATTTGATTTGACTTCGATTTCTGCACTTTTTTTTTTTTTTT
TCTCGTGCATTTGAAATGTGCTTGGTTTGCAGTGATGATTCTTGTTTACT
TAGTAGTACACGAATGAACGTGAATGAGGTGGTCATTGCATTAGAACAGT
TTTTGTTTTTTGTTCGGTGCCTGGTGGCTTCGATGGGTTTGGGCTTGTCA
TGCGAGCGTGAAGACAAGAGTTTTGAAGCTTTTAATTTGGTGTAGACGTG
AGAGTGTCCGAAGGAGGGGCAGACAGTGGCTTGTTCAGTCCTTGTCTTTC
AACCAATCTTTAGCAAGAACCAGATTCGAACTAGATTCGACAATCGGAAC
AATAAAAATCCGAGAACATTCCAGGAACGTTTGTGACCGTTACACCAACA
CAGATAATGTCACACGCATAATTGGGCTGAATCAAAGGGTCCAGATGGGA
GAAACACCTAACGCGTGTATAATCCGACAGTTCTTCGTTGAAAAATCCTT
TTATCTTTACGGTCAGATTCAGGACGGTGCGTGTTGATGTATAGGGGCGT
AGGAGGTGATTGAACTAAATAGAGAAGGACGACGATGCGATGATCCAATT
TGGTCAGGTTAATAATTATGTGGTGAGACCGAATCCACGTGGTGGGAGAA
TGCCCTCCTCTATGAGGAAGAGAGAAATGTGTGTGAGTGTGTCCATGTGT
CTGTGTGTATTTATCCCGGGAGACCAGGACGAGGGAAATGCGTACTTGCC
TGAGAGAAAATTGAAGGGTGCCATGGAAAGGCCTGTGAGTCGTGGGGTTG
CGAAACACGGGCAATAGTAAAACATGAGCCGAAAAGGCGAGGGGGTAAGG
TCGATAGAACAGGTCAAAGCTTTTTTTAAAGTCATATTTTGGCAACGTGA
GAAAGAGCTATTAGCCATCGGAGATCAATGTTGAAAGAACAAAGCCAGGT
CCTCTTGACGACGTGCAGTTAATGTTTTAACGTAAACTACGGCATGCAAG
ACAACCGTGAATTCGCCCGCTCGCCCCCACCCATCCCCGTAAGTGGTTTC
GTTACGGCGGGTAAGATGGTTGATGGGCGATGAGAGGGATTGCGGTGATG
GTTTGGAACAACAGTGTTGTGTAGTTTTTCCCAAGCGTTTTCGTGGCGAT
CTCACGTACCTCATTCCCAAGGATTTGTGTTTAGATCACAGTTGTATTAT
GTTGCTTGCATTGTGCAATTCTTATATGTATGGTGAAGACAAAATGCCCC
AAAAAACTGAATTCTAGAAGAAACAAGGTCAAGCTGTAACAAAAAGCAAG
AAAAAAAAAATTGGTCTGAAAATAGTTTTCGCGTTTTATGTACACTTTAC
TATGCCTTCAAGTATAATATGGTGTGCTCAAGATCGTCACCTTGGTCGTC
GTCGTCGTCGTCGTCGTCGTCGTCGTTCTTTTAGAACAGGTTTTGGACTG
TGCACCTCAATAAACCTCTAACAATAAAATATTCACGTACATCGTGCCCG
CCTCCAAGTATTGCTGCGAAACGCATGTGGCACCTCCTTCTTTTGACACT
GTGCACAAGTTTTAGTATTTAGAGTTATTTTTACTTGCCACCCTCTCTCC
CCCCTTCCACCCCGGTTTTTTTTTGTTTTTTTTCTCGAGGCTCGCGCCGT
TGTCCTCGTGGGCGGCACAATGCAGCCGACTGGGGACTTGGTGCGGCAGT
TGTTCTCTTCTGTCGAGTCATCCCGGGTGGACGTGTTCAGCTGCGGGCAC
GTCATCCCCAAGGAGAATCTCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig14028:2452..4424-

>mRNA_H-paniculata_contig14028.2463.1 ID=mRNA_H-paniculata_contig14028.2463.1|Name=mRNA_H-paniculata_contig14028.2463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig14028:2452..4424- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACTACAGGAGGTGCTGATGATCCGGGAAGCGTACGCAAGACAGGACG
GAGAGATCCTTTCCCAAATCCTAAGAAGCAAGAGTTGAAAGAAGAGCCAT
CCGTCAAGTTTCTCATGCTCAACCCTTCGGTGCACTTCGATGAGATCGTG
AAAAAGGCAACTACAGGAGGTGCTGATGATCCGGGAAGCGTACGCAAGAC
AGGACGGAGAGATCCTTTCCCAAATCCTAAGAAGCAAGAGTTGAAAGAAG
AGCCATCCGTCAAGTTTCTCATGCTCAACCCTTCGGTGCACTTCGATGAG
ATCGTGAAAAAGGCTCGCGCCGTTGTCCTCGTGGGCGGCACAATGCAGCC
GACTGGGGACTTGGTGCGGCAGTTGTTCTCTTCTGTCGAGTCATCCCGGG
TGGACGTGTTCAGCTGCGGGCACGTCATCCCCAAGGAGAATCTCGCTCGC
GCCGTTGTCCTCGTGGGCGGCACAATGCAGCCGACTGGGGACTTGGTGCG
GCAGTTGTTCTCTTCTGTCGAGTCATCCCGGGTGGACGTGTTCAGCTGCG
GGCACGTCATCCCCAAGGAGAATCTC
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