mRNA_H-paniculata_contig14028.2462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14028.2462.1
Unique NamemRNA_H-paniculata_contig14028.2462.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 9.000e-25
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:   25 RGPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            +GPSGKTFNFTFHRRGT EQLDELG+LMTNVC++VPGGVVCFLASYGYL+QV
Sbjct:  828 KGPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQV 879
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: A0A835YWY4_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.380e-17
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   25 RGPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            RGPSG  FNFTF +RG+ EQ+DEL +L++NVC +VPGGVVCFL S+GY+EQV
Sbjct:  769 RGPSGGVFNFTFAKRGSPEQMDELCRLLSNVCALVPGGVVCFLPSFGYMEQV 820
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: A0A433PJN9_9FUNG (ATP-dependent DNA helicase CHL1 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PJN9_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 3.490e-12
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   28 GPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            GPSG    FTF +RG  + + ELGQ + N+CR++P GVVCF ASY YLEQV
Sbjct:  647 GPSGIPLEFTFDKRGDVKLVSELGQTVVNLCRLIPDGVVCFFASYAYLEQV 697
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: A0A433QTR2_9FUNG (ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QTR2_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 8.910e-12
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   28 GPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            GPS     FTF +R   + +DELGQ++ N+C ++P GVVCF ASY YLEQV
Sbjct:  643 GPSSMPLEFTFEKRSDAKLIDELGQIVVNLCNLIPDGVVCFFASYAYLEQV 693
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: A0A433DGD7_9FUNG (ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DGD7_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 8.910e-12
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   28 GPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            GPS     FTF +R   + +DELGQ++ N+C ++P GVVCF ASY YLEQV
Sbjct:  699 GPSSMPLEFTFEKRSDAKLIDELGQIVVNLCNLIPDGVVCFFASYAYLEQV 749
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: A0A388KHF9_CHABU (Helicase ATP-binding domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KHF9_CHABU)

HSP 1 Score: 67.4 bits (163), Expect = 1.220e-11
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   25 RGPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            +GP+GK+FNFTF  R + EQ+ ELG+LM N+C +VP G+VCF  S+ Y   V
Sbjct:  619 KGPTGKSFNFTFQSRSSPEQITELGRLMVNLCSIVPQGIVCFFPSFAYETTV 670
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: UPI00155F115A (ATP-dependent DNA helicase DDX11 n=1 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155F115A)

HSP 1 Score: 67.0 bits (162), Expect = 1.660e-11
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   28 GPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            GPSG+  +FTF  R +   +DE G++++N+C +VPGGVVCFL SY YL ++
Sbjct:  653 GPSGQELDFTFQNRDSPRMMDETGRILSNICNVVPGGVVCFLPSYEYLRRI 703
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: A0A507EC42_9FUNG (ATP-dependent DNA helicase CHL1 n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EC42_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 3.100e-11
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   28 GPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            GP+ K F+F +  R  H  +DELG  + N+C +VPGGVVCF ASY YL++V
Sbjct:  581 GPTKKPFDFKYENRTNHAMIDELGATVANLCTVVPGGVVCFFASYAYLDKV 631
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: H2UNJ8_TAKRU (Helicase ATP-binding domain-containing protein n=6 Tax=Takifugu TaxID=31032 RepID=H2UNJ8_TAKRU)

HSP 1 Score: 65.9 bits (159), Expect = 4.240e-11
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   13 LLSYRGPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            L+   GPSG+  +FTF  R +   +DE G++++N+C +VPGGVVCF  SY YL ++
Sbjct:  648 LVLCNGPSGQELDFTFQNRDSPHMMDETGRILSNICNVVPGGVVCFFPSYEYLRRI 703
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BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Match: A0A6P7MU22_BETSP (ATP-dependent DNA helicase DDX11 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7MU22_BETSP)

HSP 1 Score: 65.5 bits (158), Expect = 5.800e-11
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   13 LLSYRGPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCFLASYGYLEQV 180
            L+   GPSG+  +FTF  R +   +DE G+++TNVC +VPGGVVCF  SY Y  ++
Sbjct:  649 LILCSGPSGQELDFTFQNRDSPRMMDETGRVLTNVCNVVPGGVVCFFPSYDYSRKI 704
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14028.2462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY7_ECTSI9.000e-2588.46Helicase ATP-binding domain-containing protein n=1... [more]
A0A835YWY4_9STRA3.380e-1769.23Helicase C-terminal domain-containing protein n=1 ... [more]
A0A433PJN9_9FUNG3.490e-1258.82ATP-dependent DNA helicase CHL1 n=1 Tax=Endogone s... [more]
A0A433QTR2_9FUNG8.910e-1254.90ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdema... [more]
A0A433DGD7_9FUNG8.910e-1254.90ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdema... [more]
A0A388KHF9_CHABU1.220e-1153.85Helicase ATP-binding domain-containing protein n=1... [more]
UPI00155F115A1.660e-1150.98ATP-dependent DNA helicase DDX11 n=1 Tax=Etheostom... [more]
A0A507EC42_9FUNG3.100e-1152.94ATP-dependent DNA helicase CHL1 n=1 Tax=Powellomyc... [more]
H2UNJ8_TAKRU4.240e-1146.43Helicase ATP-binding domain-containing protein n=6... [more]
A0A6P7MU22_BETSP5.800e-1148.21ATP-dependent DNA helicase DDX11 n=1 Tax=Betta spl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14028contigH-paniculata_contig14028:407..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue5.1e-21
Seed eggNOG ortholog2880.D8LPY7
Preferred nameCHL1
KEGG koko:K11273
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0033554,GO:0034085,GO:0034641,GO:0034645,GO:0035861,GO:0036297,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0098813,GO:0140014,GO:0140097,GO:1901360,GO:1901576,GO:1903047
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1133@2759
Ec32 ortholog descriptionDNA helicase (DNA repair), Rad3 type
Ec32 orthologEc-15_001630.1
EC3.6.4.13
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size180
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929115.1559808-CDS-H-paniculata_contig14028:406..5861622929115.1559808-CDS-H-paniculata_contig14028:406..586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14028 407..586 -
1691480737.2869096-CDS-H-paniculata_contig14028:406..5861691480737.2869096-CDS-H-paniculata_contig14028:406..586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14028 407..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14028.2462.1prot_H-paniculata_contig14028.2462.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14028 407..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14028.2462.1

>prot_H-paniculata_contig14028.2462.1 ID=prot_H-paniculata_contig14028.2462.1|Name=mRNA_H-paniculata_contig14028.2462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MNHLLLSYRGPSGKTFNFTFHRRGTHEQLDELGQLMTNVCRMVPGGVVCF
LASYGYLEQV
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mRNA from alignment at H-paniculata_contig14028:407..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14028.2462.1 ID=mRNA_H-paniculata_contig14028.2462.1|Name=mRNA_H-paniculata_contig14028.2462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig14028:407..586- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCATTTGTTGCTATCGTACAGAGGACCCTCCGGGAAAACGTTCAA
CTTCACGTTTCATCGGCGAGGCACCCACGAACAGCTCGACGAGCTGGGCC
AGCTAATGACCAATGTTTGCAGGATGGTGCCGGGCGGTGTCGTGTGCTTC
CTCGCCTCGTACGGGTATCTGGAGCAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14028:407..586-

>mRNA_H-paniculata_contig14028.2462.1 ID=mRNA_H-paniculata_contig14028.2462.1|Name=mRNA_H-paniculata_contig14028.2462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig14028:407..586- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCATTTGTTGCTATCGTACAGAGGACCCTCCGGGAAAACGTTCAA
CTTCACGTTTCATCGGCGAGGCACCCACGAACAGCTCGACGAGCTGGGCC
AGCTAATGACCAATGTTTGCAGGATGGTGCCGGGCGGTGTCGTGTGCTTC
CTCGCCTCGTACGGGTATCTGGAGCAAGTGATGAATCATTTGTTGCTATC
GTACAGAGGACCCTCCGGGAAAACGTTCAACTTCACGTTTCATCGGCGAG
GCACCCACGAACAGCTCGACGAGCTGGGCCAGCTAATGACCAATGTTTGC
AGGATGGTGCCGGGCGGTGTCGTGTGCTTCCTCGCCTCGTACGGGTATCT
GGAGCAAGTG
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