mRNA_H-paniculata_contig13997.2434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13997.2434.1
Unique NamemRNA_H-paniculata_contig13997.2434.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: D7FU15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU15_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.120e-47
Identity = 84/107 (78.50%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    1 LAIFFQDYMERNLAPVDYDDRWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTDFLVRMVEN 321
            +A+  +DYMERNLAP D+ DRWGTL RSA+KSVAAGVAGAALTNPLDVLRNEMFKTDL V  ALAKLR+EEG+ F VRGM+KNLVAVAIPI VTIF+TD LVR VE 
Sbjct:  167 VAVSVKDYMERNLAPADHGDRWGTLWRSAQKSVAAGVAGAALTNPLDVLRNEMFKTDLGVRDALAKLRREEGSGFAVRGMSKNLVAVAIPITVTIFVTDVLVRAVEE 273          
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: A0A835YRL8_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.410e-33
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 1
Query:    1 LAIFFQDYMERNLAPVDYD-DRWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTDFLVR 309
            +A+  +DYME  L P + +   WG   RSAKKSVAAGVAGAALTNP+DVLRNEMFKTDL V +AL+KL  EEGA++  RGM KNLVAV+IPI +TIF TD L+R
Sbjct:  174 VAVAVKDYMEGVLDPPNPELGSWGAAWRSAKKSVAAGVAGAALTNPVDVLRNEMFKTDLGVRQALSKLIHEEGAQWATRGMTKNLVAVSIPIGLTIFFTDVLIR 277          
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: A0A7S2MG35_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MG35_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.530e-31
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    4 AIFFQDYMERNLAPVDYDDRWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTDFLVRM 312
            AI  +DY+E  L   D   R  TL RSA KS+ AGVAGAALTNP DVLRNEMFKTDL V   L  L Q+EG  FM+RG+ KNL+AVA+PI VTIF TD  V++
Sbjct:   50 AIVVKDYLEAKLPLWDDMTRNETLLRSAAKSIVAGVAGAALTNPFDVLRNEMFKTDLGVSATLRSLHQQEGFAFMLRGVEKNLIAVAVPITVTIFFTDLFVKL 152          
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: A9VDC5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VDC5_MONBE)

HSP 1 Score: 109 bits (272), Expect = 1.040e-27
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    4 AIFFQDYMERNLAPVDYD-DRWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTD 297
            A+  +  M+R+LAPV+ + DR G L RSAKK+V AG AGA LTNP DV+RN MF+TDL +  A+  L Q EG RF+ RG+ KN++AVAIP+ VTIF+TD
Sbjct:   99 AVLVKQAMDRSLAPVNKEQDRLGWLVRSAKKAVVAGTAGAILTNPFDVIRNHMFRTDLGMVPAIRSLYQTEGPRFVWRGVAKNMIAVAIPVTVTIFLTD 197          
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: F2U662_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U662_SALR5)

HSP 1 Score: 109 bits (272), Expect = 4.610e-27
Identity = 54/102 (52.94%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    4 AIFFQDYMERNLAPVDYDDRWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTDFLVR 309
            A++ ++ M+  LAPVD  DR   L RSAKKSV AG+AGA LTNPLDV+RN MF+T+ S+ + +  L  ++G RF+ +G+ KNLVAVA+P+++TIF+TD   R
Sbjct:  164 AVYVKEMMDEWLAPVDSTDRTAVLVRSAKKSVIAGLAGATLTNPLDVIRNTMFQTETSMFQTIKHLHAKKGWRFLYQGLGKNLVAVAVPVSLTIFLTDAFSR 265          
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: A0A6U9R120_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U9R120_9DINO)

HSP 1 Score: 108 bits (269), Expect = 1.430e-26
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    1 LAIFFQDYMERNLAPVDYDDRWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTD 297
            +A+  +DYM + LAPVD  D+   L +SAK +V+AGVAGA LTNPLDV+RNEMFKT+  +   +A++  E GA ++ RG+NKN VAVA PIA TIF+TD
Sbjct:  167 VAVLIKDYMGQWLAPVDPADKSAVLMKSAKVAVSAGVAGAVLTNPLDVVRNEMFKTEEKMLPCMARMTSETGAAWLFRGINKNWVAVAAPIASTIFLTD 265          
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: A0A7S0KAL9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAL9_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.170e-25
Identity = 58/105 (55.24%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    4 AIFFQDYMERNLAPVDYDD---RWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTDFLVR 309
            A+F +DYME NL  VD      +  +L RSA KSV AGVAGAALTNPLDV+RNEMFKT+ ++   +  L ++ G +   RGM KNLVAV+IP+A TIF TD L++
Sbjct:  177 AVFVKDYMEMNLPEVDPSSPTYKSDSLIRSATKSVIAGVAGAALTNPLDVIRNEMFKTNQNLKETVVGLHKKGGWQVFARGMGKNLVAVSIPVASTIFFTDMLIQ 281          
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: A0A7S3F2X1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F2X1_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 1.300e-25
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   73 LSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTDFLVR 309
            LSRSA KSVAAGVAGAALTNPLDV+RNEMFKT+ +V   + +L + EGA FM RGM +NL+AVA PI +TIF+TD +V 
Sbjct:   28 LSRSAAKSVAAGVAGAALTNPLDVVRNEMFKTEEAVAPTVRRLWKLEGAGFMFRGMQRNLIAVAAPIGMTIFLTDTIVE 106          
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: A0A7S2G6Q8_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2G6Q8_9DINO)

HSP 1 Score: 105 bits (261), Expect = 1.430e-25
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    4 AIFFQDYMERNLAPVDYDDRWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTD 297
            AI  +D MER L PVD         RSAKKS+AAGV GA LTNPLDVL+N+MFKT+ S   +  +L +EEG R++ RG+ KN++A A+PIA T+F+TD
Sbjct:  142 AIVAKDAMERLLEPVDGQSAGSQAVRSAKKSMAAGVVGAVLTNPLDVLQNQMFKTEESAAASFRRLCREEGCRWLARGIEKNVIASAVPIAATMFLTD 239          
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Match: A0A7S2C8L2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C8L2_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 4.950e-25
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    4 AIFFQDYMERNLAPVDY-----DDRWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDLSVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTDFLVR 309
            AI+ +D++   L P D      + R  TL+RSA KS+AAGVAGAALTNPLDV+RNEMFK +   G+ + +L + EG  F +RGM +NLVAVA PI +TIF+TD L+ 
Sbjct:  164 AIWVKDWVASKLPPPDAPKGTPEHRLQTLNRSAAKSIAAGVAGAALTNPLDVIRNEMFKFEEGFGQTVTRLLRSEGWAFCMRGMQRNLVAVAAPIGMTIFLTDALLE 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13997.2434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU15_ECTSI2.120e-4778.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRL8_9STRA4.410e-3365.38Mitochondrial carrier domain-containing protein n=... [more]
A0A7S2MG35_9STRA1.530e-3161.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A9VDC5_MONBE1.040e-2757.58Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
F2U662_SALR54.610e-2752.94Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A6U9R120_9DINO1.430e-2656.57Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S0KAL9_9STRA1.170e-2555.24Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S3F2X1_9EUKA1.300e-2567.09Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2G6Q8_9DINO1.430e-2555.10Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S2C8L2_9EUKA4.950e-2553.27Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13997contigH-paniculata_contig13997:235..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue2.1e-35
Seed eggNOG ortholog2880.D7FU15
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs2C9EI@1,2RYD4@2759
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-27_001070.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.988328-UTR-H-paniculata_contig13997:234..2581622929110.988328-UTR-H-paniculata_contig13997:234..258Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13997 235..258 +
1691480735.6330552-UTR-H-paniculata_contig13997:234..2581691480735.6330552-UTR-H-paniculata_contig13997:234..258Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13997 235..258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.0006642-CDS-H-paniculata_contig13997:258..5581622929111.0006642-CDS-H-paniculata_contig13997:258..558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13997 259..558 +
1691480735.6427836-CDS-H-paniculata_contig13997:258..5581691480735.6427836-CDS-H-paniculata_contig13997:258..558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13997 259..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13997.2434.1prot_H-paniculata_contig13997.2434.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13997 259..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13997.2434.1

>prot_H-paniculata_contig13997.2434.1 ID=prot_H-paniculata_contig13997.2434.1|Name=mRNA_H-paniculata_contig13997.2434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MERNLAPVDYDDRWGTLSRSAKKSVAAGVAGAALTNPLDVLRNEMFKTDL
SVGRALAKLRQEEGARFMVRGMNKNLVAVAIPIAVTIFMTDFLVRMVEN*
back to top

mRNA from alignment at H-paniculata_contig13997:235..558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13997.2434.1 ID=mRNA_H-paniculata_contig13997.2434.1|Name=mRNA_H-paniculata_contig13997.2434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig13997:235..558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCCATTTTTTTTCAGGACTACATGGAGAGAAACCTCGCTCCCGTTGA CTATGACGACCGATGGGGCACCCTTTCGCGCTCGGCGAAGAAATCAGTCG CTGCTGGAGTAGCTGGCGCGGCTCTCACGAACCCGTTAGATGTGCTCCGA AACGAAATGTTCAAGACAGATCTCAGCGTCGGAAGAGCCTTGGCCAAGTT ACGGCAAGAGGAAGGGGCTCGGTTCATGGTGCGAGGGATGAACAAGAACC TTGTAGCCGTGGCTATTCCGATTGCCGTTACTATTTTTATGACGGATTTC TTGGTACGAATGGTTGAAAATTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13997:235..558+

>mRNA_H-paniculata_contig13997.2434.1 ID=mRNA_H-paniculata_contig13997.2434.1|Name=mRNA_H-paniculata_contig13997.2434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig13997:235..558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAGAAACCTCGCTCCCGTTGACTATGACGACCGATGGGGCACCCT
TTCGCGCTCGGCGAAGAAATCAGTCGCTGCTGGAGTAGCTGGCGCGGCTC
TCACGAACCCGTTAGATGTGCTCCGAAACGAAATGTTCAAGACAGATCTC
AGCGTCGGAAGAGCCTTGGCCAAGTTACGGCAAGAGGAAGGGGCTCGGTT
CATGGTGCGAGGGATGAACAAGAACCTTGTAGCCGTGGCTATTCCGATTG
CCGTTACTATTTTTATGACGGATTTCTTGGTACGAATGGTTGAAAATTGA
ATGGAGAGAAACCTCGCTCCCGTTGACTATGACGACCGATGGGGCACCCT
TTCGCGCTCGGCGAAGAAATCAGTCGCTGCTGGAGTAGCTGGCGCGGCTC
TCACGAACCCGTTAGATGTGCTCCGAAACGAAATGTTCAAGACAGATCTC
AGCGTCGGAAGAGCCTTGGCCAAGTTACGGCAAGAGGAAGGGGCTCGGTT
CATGGTGCGAGGGATGAACAAGAACCTTGTAGCCGTGGCTATTCCGATTG
CCGTTACTATTTTTATGACGGATTTCTTGGTACGAATGGTTGAAAATTGA
back to top