mRNA_H-paniculata_contig13995.2433.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13995.2433.1
Unique NamemRNA_H-paniculata_contig13995.2433.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: A5AJZ9_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AJZ9_VITVI)

HSP 1 Score: 65.5 bits (158), Expect = 1.280e-10
Identity = 23/67 (34.33%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 ELGWKNFHSVRIFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILT 201
            ++ W++  S+RI+CDN   + +A  + Y S++KH+ I++  +R+ + ++ ++I+HVSTK+ + D+LT
Sbjct:  388 DVSWRSAKSLRIYCDNSTTVFMAKNNKYSSQNKHIDIKYLAIRECVKEKTVVIEHVSTKSIIYDLLT 454          
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: A0A0J7K7M6_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7M6_LASNI)

HSP 1 Score: 62.8 bits (151), Expect = 1.200e-9
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 ELGWKNFHSVRIFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILTNFCSRP 219
            ELG+ N     IF DN GA  LA    Y SRSKH+ +R   +R+ +N   I ++HVST + +SDI+T    RP
Sbjct: 1277 ELGFDNLTDTTIFNDNLGAKKLAENPGYHSRSKHIDVRHHFIREALNNELIKVEHVSTNDMISDIMTKGLPRP 1349          
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: A0A371GPV0_MUCPR (Copia protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371GPV0_MUCPR)

HSP 1 Score: 58.5 bits (140), Expect = 4.360e-9
Identity = 23/56 (41.07%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   34 IFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILT 201
            IFCDNK A+ L+    +  RSKH+ IRF  +R+W+ +++++I++  T+ Q++DI T
Sbjct:   53 IFCDNKSAIALSKNPVFHGRSKHIDIRFHKIREWVVEKEVVIEYCPTEEQVADIFT 108          
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: A0A2I0XJ16_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XJ16_9ASPA)

HSP 1 Score: 59.3 bits (142), Expect = 6.440e-9
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 ELGWKNFHSVRIFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILTNFCSRPTFSTL 234
            E G  +     I+CDN  A+ LA    + +R+KH+ I +  + + I Q  I +DH+ST +Q++DILT   S   FSTL
Sbjct:  104 EFGISSTGPTTIYCDNTSAIALAHNPVFHARTKHIEIDYHFISEHIKQGAIRVDHISTNDQIADILTKSLSTTQFSTL 181          
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: A0A6A3R380_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3R380_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-8
Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 ELGWKNFHSVRIFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILTNFCSRPTFSTLL 237
            ++G +   +  I+ DNKGA+ LA    Y SR+KH+ IR+  +R+ +   ++ +++V TKNQL+D +T   S  T   L+
Sbjct:    7 DIGAEQVGATVIYEDNKGAMALAKDVGYQSRTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADFMTKGISLKTLRYLM 85          
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: UPI0009010679 (uncharacterized protein LOC109150298 n=2 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009010679)

HSP 1 Score: 58.5 bits (140), Expect = 3.090e-8
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    1 ELGWKNFHSVRIFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILTNFCSRPTFS 228
            ELG  +     ++CDN GA  L     + +R+KH+ I F  +RD +  R+ I++ VSTK+QL+DILT     P F+
Sbjct:  220 ELGLHSGDPATLWCDNLGATYLCANPVFHARTKHVEIDFHFVRDKVASREFIVNFVSTKDQLADILTKPLPGPRFA 295          
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: UPI0006A6DC46 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6DC46)

HSP 1 Score: 58.5 bits (140), Expect = 3.440e-8
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 ELGWKNFHSVRIFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILTNFCSRPTFSTLL 237
            ELG K+  +  I+ DN G   LA    + SR KHL + +  ++ +I   Q+ + HVST +QL+D+LT    RP F TL+
Sbjct:  260 ELGIKSPTTPVIYFDNIGETYLAANPVFHSRMKHLALDYHFVKQYIQAGQLRVSHVSTHDQLADVLTKPLPRPAFETLM 338          
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: A0A371ERG2_MUCPR (Copia protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371ERG2_MUCPR)

HSP 1 Score: 55.8 bits (133), Expect = 4.130e-8
Identity = 22/56 (39.29%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   34 IFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILT 201
            IFCDNK A+ L+    +  RSKH+ IRF  +R+W+ +++++I++   K Q+++I T
Sbjct:    2 IFCDNKSAIALSKNPVFHGRSKHIDIRFHKIREWVVEKEVVIEYCPIKEQVTNIFT 57          
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI)

HSP 1 Score: 58.2 bits (139), Expect = 4.850e-8
Identity = 26/62 (41.94%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   31 RIFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILTNFCSR 216
            +I+CDNKGA+ LA  +N+  ++KH+ I+F  + D I   ++++ HVST+  L+D+LT   SR
Sbjct:  380 QIYCDNKGAIDLARNNNHSEQTKHVDIKFKLVHDEIVNNRMLLTHVSTEKMLADVLTKSLSR 441          
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Match: A0A540MKD8_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MKD8_MALBA)

HSP 1 Score: 57.4 bits (137), Expect = 7.010e-8
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    1 ELGWKNFHSVRIFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQIIIDHVSTKNQLSDILTNFCSRPTFSTL 234
            ELG  +     I CDN GA   +      SR KH+ + F  +RD +N+  + + HVST++QL+D+LT    RP F  L
Sbjct:  163 ELGVSSMDKPTISCDNIGATFYSVNPVLHSRMKHIELDFQFVRDRVNRGLLQVSHVSTQDQLADVLTKALPRPRFQLL 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13995.2433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A5AJZ9_VITVI1.280e-1034.33Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A0J7K7M6_LASNI1.200e-943.84Retrovirus-related gag-pol polyprotein n=1 Tax=Las... [more]
A0A371GPV0_MUCPR4.360e-941.07Copia protein (Fragment) n=1 Tax=Mucuna pruriens T... [more]
A0A2I0XJ16_9ASPA6.440e-938.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3R380_9STRA1.220e-835.44Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
UPI00090106793.090e-839.47uncharacterized protein LOC109150298 n=2 Tax=Ipomo... [more]
UPI0006A6DC463.440e-839.24uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A371ERG2_MUCPR4.130e-839.29Copia protein (Fragment) n=1 Tax=Mucuna pruriens T... [more]
A0A4Q3EC79_9SPHI4.850e-841.94Transposon Pol polyprotein (Fragment) n=1 Tax=Sphi... [more]
A0A540MKD8_MALBA7.010e-838.46Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13995contigH-paniculata_contig13995:6485..6724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue8.5e-08
Seed eggNOG ortholog3712.Bo7g056290.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37RIF@33090,3GHHW@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.9422553-CDS-H-paniculata_contig13995:6484..67241622929110.9422553-CDS-H-paniculata_contig13995:6484..6724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13995 6485..6724 -
1691480735.6191235-CDS-H-paniculata_contig13995:6484..67241691480735.6191235-CDS-H-paniculata_contig13995:6484..6724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13995 6485..6724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13995.2433.1prot_H-paniculata_contig13995.2433.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13995 6485..6724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13995.2433.1

>prot_H-paniculata_contig13995.2433.1 ID=prot_H-paniculata_contig13995.2433.1|Name=mRNA_H-paniculata_contig13995.2433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
ELGWKNFHSVRIFCDNKGALLLAGQDNYGSRSKHLVIRFAGLRDWINQRQ
IIIDHVSTKNQLSDILTNFCSRPTFSTLL*
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mRNA from alignment at H-paniculata_contig13995:6485..6724-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13995.2433.1 ID=mRNA_H-paniculata_contig13995.2433.1|Name=mRNA_H-paniculata_contig13995.2433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig13995:6485..6724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTTGGATGGAAAAACTTCCACAGCGTCCGCATCTTTTGCGATAATAA AGGAGCGCTACTTCTTGCAGGTCAAGACAACTATGGAAGCAGGTCCAAAC ATCTGGTCATTCGTTTTGCCGGGCTCCGCGATTGGATTAACCAGCGCCAG ATAATTATCGACCATGTCTCCACGAAGAACCAACTCAGCGACATCTTAAC CAACTTCTGCTCAAGACCGACCTTCTCTACCCTACTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13995:6485..6724-

>mRNA_H-paniculata_contig13995.2433.1 ID=mRNA_H-paniculata_contig13995.2433.1|Name=mRNA_H-paniculata_contig13995.2433.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig13995:6485..6724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTTGGATGGAAAAACTTCCACAGCGTCCGCATCTTTTGCGATAATAA
AGGAGCGCTACTTCTTGCAGGTCAAGACAACTATGGAAGCAGGTCCAAAC
ATCTGGTCATTCGTTTTGCCGGGCTCCGCGATTGGATTAACCAGCGCCAG
ATAATTATCGACCATGTCTCCACGAAGAACCAACTCAGCGACATCTTAAC
CAACTTCTGCTCAAGACCGACCTTCTCTACCCTACTGTAGGAGCTTGGAT
GGAAAAACTTCCACAGCGTCCGCATCTTTTGCGATAATAAAGGAGCGCTA
CTTCTTGCAGGTCAAGACAACTATGGAAGCAGGTCCAAACATCTGGTCAT
TCGTTTTGCCGGGCTCCGCGATTGGATTAACCAGCGCCAGATAATTATCG
ACCATGTCTCCACGAAGAACCAACTCAGCGACATCTTAACCAACTTCTGC
TCAAGACCGACCTTCTCTACCCTACTGTAG
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