mRNA_H-paniculata_contig13974.2423.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13974.2423.1
Unique NamemRNA_H-paniculata_contig13974.2423.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: D8LJI4_ECTSI (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 9.530e-21
Identity = 38/63 (60.32%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 RRTGSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMVEYLE 189
            +R   VR+VGET+FA+G+W+GVELSP+ +P G +DG+V+GV YFKCPP  G+F +PDM E LE
Sbjct:  390 KRAAVVRYVGETQFATGVWVGVELSPDADPPGNNDGSVRGVSYFKCPPLCGVFAKPDMFELLE 452          
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: A0A6H5KBA3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBA3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.310e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 RRTGSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMVEYLE 189
            +R   VR+VGET+FA+G+W+GVELSP  +P G +DG+V+GV YFKCPP  G+F +PDM E LE
Sbjct:  378 KRAAVVRYVGETQFATGVWVGVELSPGADPPGNNDGSVRGVSYFKCPPLCGVFAKPDMFELLE 440          
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: A0A7S3UUX6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUX6_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 2.010e-16
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   10 GSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMVE 180
            G+VRF+GET+FA G+WIGVEL+ +    G HDGTVKGV YF CP  +G+F+RPD V 
Sbjct:  113 GTVRFIGETKFAQGVWIGVELTVKK---GKHDGTVKGVRYFLCPQNQGVFVRPDSVR 166          
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: A0A8J4TC35_CLAMG (CAP-Gly domain-containing linker protein 4 isoform X2 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4TC35_CLAMG)

HSP 1 Score: 77.0 bits (188), Expect = 2.850e-16
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 RRTGSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMVEYLEGN 195
            +RTG VRF G+TRFA GIW+G+EL    +P+G +DG+V GV YF CPP  G+F  P  V+ + G+
Sbjct:   41 QRTGVVRFYGKTRFAPGIWLGIELD---KPSGKNDGSVGGVKYFSCPPKHGVFAPPSRVQRIHGS 102          
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: A0A1Y2B0I4_9FUNG (CAP-Gly domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2B0I4_9FUNG)

HSP 1 Score: 75.5 bits (184), Expect = 1.110e-15
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   10 GSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMVEYLEGNGGGD 207
            G+VR++GET+F +GIW+GVEL  +    G ++GTV GV YFKCPP  GIF+    VE L G+ G D
Sbjct:   67 GTVRYIGETKFKTGIWVGVEL--DKRGVGKNNGTVMGVTYFKCPPLTGIFIPVTAVEKLSGDQGND 130          
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: C3YMN8_BRAFL (CAP-Gly domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YMN8_BRAFL)

HSP 1 Score: 72.4 bits (176), Expect = 2.410e-15
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   10 GSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMV 177
            G V+FVGET FASG W+G+EL  +   TG +DG VKGV YFKC P  GIF+RPD V
Sbjct:   12 GVVKFVGETEFASGPWVGIELDLD---TGKNDGEVKGVRYFKCRPNYGIFVRPDKV 64          
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: A0A3B3QMQ8_9TELE (Si:dkeyp-47f9.4 n=4 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QMQ8_9TELE)

HSP 1 Score: 77.8 bits (190), Expect = 4.560e-15
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 RRTGSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMVEYLEGN 195
            +RTG VRF G T FA G W+G+EL    +P+G +DG+V GVCYF CPP  GIF  P  V+ + G+
Sbjct:  408 QRTGVVRFSGNTNFAPGFWVGIELD---KPSGKNDGSVGGVCYFTCPPKHGIFAPPSRVQRIHGS 469          
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: A0A165N0P1_EXIGL (Tubulin-folding cofactor B n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165N0P1_EXIGL)

HSP 1 Score: 75.1 bits (183), Expect = 9.430e-15
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 RRTGSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMVEYLE 189
            R+ G+VRFVGETRFA G+W+GVE     EP G +DG+V+G  YF C P+ G F+RPD V   E
Sbjct:  162 RKRGTVRFVGETRFAKGLWVGVEYD---EPLGKNDGSVEGEGYFTCRPSYGAFVRPDRVSIGE 221          
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: M2QPV1_CERS8 (Uncharacterized protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2QPV1_CERS8)

HSP 1 Score: 74.7 bits (182), Expect = 1.260e-14
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    4 RTGSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMVE 180
            + G+VRFVG T+FA G+W+G+E     EP G +DG+V+G  YF CPP+ G+F++PD V+
Sbjct:  163 KRGTVRFVGPTKFAKGVWVGIEFD---EPIGKNDGSVQGEQYFTCPPSHGVFVKPDRVK 218          
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Match: A0A8J4TDN8_CLAMG (CAP-Gly domain-containing linker protein 4 isoform X2 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4TDN8_CLAMG)

HSP 1 Score: 74.3 bits (181), Expect = 4.380e-14
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 RRTGSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPARGIFLRPDMVE 180
            +RTG VRF G+TRFA GIW+G+EL    +P+G +DG+V GV YF CPP  G+F  P  V+
Sbjct:  258 QRTGVVRFYGKTRFAPGIWLGIELD---KPSGKNDGSVGGVKYFSCPPKHGVFAPPSRVQ 314          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13974.2423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI4_ECTSI9.530e-2160.32CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KBA3_9PHAE3.310e-2060.32CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3UUX6_HETAK2.010e-1661.40Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J4TC35_CLAMG2.850e-1652.31CAP-Gly domain-containing linker protein 4 isoform... [more]
A0A1Y2B0I4_9FUNG1.110e-1553.03CAP-Gly domain-containing protein n=1 Tax=Neocalli... [more]
C3YMN8_BRAFL2.410e-1562.50CAP-Gly domain-containing protein (Fragment) n=1 T... [more]
A0A3B3QMQ8_9TELE4.560e-1552.31Si:dkeyp-47f9.4 n=4 Tax=Paramormyrops kingsleyae T... [more]
A0A165N0P1_EXIGL9.430e-1555.56Tubulin-folding cofactor B n=1 Tax=Exidia glandulo... [more]
M2QPV1_CERS81.260e-1450.85Uncharacterized protein n=1 Tax=Ceriporiopsis subv... [more]
A0A8J4TDN8_CLAMG4.380e-1455.00CAP-Gly domain-containing linker protein 4 isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13974contigH-paniculata_contig13974:313..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue8.3e-18
Seed eggNOG ortholog2880.D8LJI4
KEGG koko:K10423,ko:K10758
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule binding
EggNOG OGsCOG5244@1,KOG4568@2759
EC1.8.3.2
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.2020066-CDS-H-paniculata_contig13974:312..5311622929110.2020066-CDS-H-paniculata_contig13974:312..531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13974 313..531 -
1691480735.3622952-CDS-H-paniculata_contig13974:312..5311691480735.3622952-CDS-H-paniculata_contig13974:312..531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13974 313..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13974.2423.1prot_H-paniculata_contig13974.2423.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13974 313..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13974.2423.1

>prot_H-paniculata_contig13974.2423.1 ID=prot_H-paniculata_contig13974.2423.1|Name=mRNA_H-paniculata_contig13974.2423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
RRTGSVRFVGETRFASGIWIGVELSPEMEPTGIHDGTVKGVCYFKCPPAR
GIFLRPDMVEYLEGNGGGDGAG*
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mRNA from alignment at H-paniculata_contig13974:313..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13974.2423.1 ID=mRNA_H-paniculata_contig13974.2423.1|Name=mRNA_H-paniculata_contig13974.2423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig13974:313..531- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGAACCGGTTCCGTGCGATTCGTAGGCGAAACTCGGTTCGCCTCGGG CATCTGGATAGGCGTGGAGCTTAGTCCAGAGATGGAGCCTACGGGAATCC ACGATGGAACGGTGAAGGGCGTGTGTTACTTCAAGTGCCCTCCCGCTCGT GGGATATTTCTGCGGCCTGACATGGTGGAGTATCTGGAGGGAAATGGCGG CGGTGACGGGGCAGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13974:313..531-

>mRNA_H-paniculata_contig13974.2423.1 ID=mRNA_H-paniculata_contig13974.2423.1|Name=mRNA_H-paniculata_contig13974.2423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig13974:313..531- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGAACCGGTTCCGTGCGATTCGTAGGCGAAACTCGGTTCGCCTCGGG
CATCTGGATAGGCGTGGAGCTTAGTCCAGAGATGGAGCCTACGGGAATCC
ACGATGGAACGGTGAAGGGCGTGTGTTACTTCAAGTGCCCTCCCGCTCGT
GGGATATTTCTGCGGCCTGACATGGTGGAGTATCTGGAGGGAAATGGCGG
CGGTGACGGGGCAGGGTGACGACGAACCGGTTCCGTGCGATTCGTAGGCG
AAACTCGGTTCGCCTCGGGCATCTGGATAGGCGTGGAGCTTAGTCCAGAG
ATGGAGCCTACGGGAATCCACGATGGAACGGTGAAGGGCGTGTGTTACTT
CAAGTGCCCTCCCGCTCGTGGGATATTTCTGCGGCCTGACATGGTGGAGT
ATCTGGAGGGAAATGGCGGCGGTGACGGGGCAGGGTGA
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