mRNA_H-paniculata_contig13924.2404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13924.2404.1
Unique NamemRNA_H-paniculata_contig13924.2404.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13924.2404.1 vs. uniprot
Match: A0A6U2J5U5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2J5U5_HEMAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.930e-15
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    1 LADGRVLLDAKLVSRQTVADHFVEEGTQGLHFCRLEPRLDDPPADQGATVELEELHQRTREMADRIMGP---VRSQIVDRYGQMPAGAEPLSLWIASVLPMPVRDRHALLSSTSTMVRLRAC 357
            LADGR  L AK   R T+ + ++E+GTQGLH+C+++   D   A +     LEE      ++   +M     +  +I  +YG  PA +E  S W++S+LP+P  D+H LL+  +T  RL  C
Sbjct:  167 LADGRAHLQAKCRDRFTIKEAWIEDGTQGLHWCKVDLVNDGVSASESERQALEEAVSDCEQLFASVMARSSHLAREIESQYGSRPADSERFSFWLSSILPVPYGDKHCLLTCLNTTERLTLC 288
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BLAST of mRNA_H-paniculata_contig13924.2404.1 vs. uniprot
Match: A0A482RY16_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY16_9ARCH)

HSP 1 Score: 72.0 bits (175), Expect = 2.480e-11
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:    1 LADGRVLLDAKLVSRQTVADHFVEEGTQGLHFCRLEPRLDDPPADQGATVELEELHQRTREMADRIMGPVRSQIVDR-YGQMPAGAEPLSLWIAS 282
            LADGR LL+  LVSRQ +A+H+VE+GTQGLH+CRLE   DD   +Q    + + L Q+ R +   + G    +++++  G  P   E  SLW+ S
Sbjct:  190 LADGRCLLEGLLVSRQRIAEHYVEQGTQGLHYCRLESLRDDGLGEQRRQ-QADYLSQQLRTLLASLGGGSSRRLLEQGLGSPPQDLENFSLWLLS 283
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BLAST of mRNA_H-paniculata_contig13924.2404.1 vs. uniprot
Match: A0A6V3MPG8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3MPG8_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 1.110e-9
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 1 
Query:    1 LADGRVLLDAKLVSRQTVADHFVEEGTQGLHFCRLEPRLDDPPADQGATVELEEL---HQRTREMADRIMGPVRSQIVDRYGQMPAGAEPL--SLWIASVLPMPVRD---RHALLSSTSTMVRLRACERHLASL 378
            L DGR LL A +  R  V + +VEEGTQGLH+C+  P +++       TV+ EEL   H++   + + + G ++ QIV   G+ P    P+  S W+A+ + M  R      +LL +T T  RL+  +R L+ +
Sbjct:  186 LPDGRALLKATIQKRVKVTNTWVEEGTQGLHYCQFHPYVEEDK-----TVDEEELNAVHKQVNGLFNHVPG-LKDQIVHHIGKQPPLTNPVLWSFWLAAFVTMVSRSGVQSMSLLKTTKTSERLKQSKRLLSQV 313
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BLAST of mRNA_H-paniculata_contig13924.2404.1 vs. uniprot
Match: A0A7S0CSC1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CSC1_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.970e-9
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:    1 LADGRVLLDAKLVSRQTVADHFVEEGTQGLHFCRLEPRLDDPPADQGATVELEELHQRTREMADRIMGPVRSQIVDRYGQMP--AGAEPLSLWIASVLPMPVRDRHA---LLSSTSTMVRLRACERHLASLDGST 390
            L+DGR LL A LV R  + + +VEEGTQGLH+C+ +   +     + A V+  E+H +   +     G +R QIV+  G+ P  + A   S WI++++ M  R   +   LL +T T  RL+  +  L+ +   T
Sbjct:  183 LSDGRALLKATLVKRVVITNSWVEEGTQGLHYCQYQAYEETDKTVKEADVK--EIHAKVNVILQSAPG-LREQIVNHIGKQPPISNATQFSFWISALVTMITRAGKSGMPLLKTTKTAERLKLVKTVLSQIVSQT 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13924.2404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6U2J5U5_HEMAN1.930e-1536.07Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A482RY16_9ARCH2.480e-1142.11RING-type domain-containing protein n=1 Tax=archae... [more]
A0A6V3MPG8_9EUKA1.110e-934.33Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S0CSC1_9EUKA1.970e-933.33Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13924contigH-paniculata_contig13924:1751..2855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue1.2e-22
Seed eggNOG ortholog2880.D8LI81
KEGG koko:K20779
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000151,GO:0000209,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003674,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010212,GO:0010390,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019724,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031491,GO:0031593,GO:0031974,GO:0031981,GO:0032182,GO:0032446,GO:0032501,GO:0032502,GO:0032784,GO:0032785,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033554,GO:0034243,GO:0034244,GO:0034641,GO:0034644,GO:0035518,GO:0035861,GO:0036211,GO:0036351,GO:0036352,GO:0042113,GO:0042393,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045190,GO:0045321,GO:0045739,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046649,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051603,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070530,GO:0070534,GO:0070535,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0104004,GO:0140030,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1990234,GO:1990391,GO:2000112,GO:2000113,GO:2001020,GO:2001022,GO:2001141
EggNOG free text desc.histone H2A-K13 ubiquitination
EggNOG OGsCOG2802@1,KOG4159@2759
EC2.3.2.31
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Exons2
Model size696
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.8176208-CDS-H-paniculata_contig13924:1750..22331622929105.8176208-CDS-H-paniculata_contig13924:1750..2233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13924 1751..2233 -
1691480733.7059996-CDS-H-paniculata_contig13924:1750..22331691480733.7059996-CDS-H-paniculata_contig13924:1750..2233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13924 1751..2233 -
1622929105.8323343-CDS-H-paniculata_contig13924:2642..28551622929105.8323343-CDS-H-paniculata_contig13924:2642..2855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13924 2643..2855 -
1691480733.7178814-CDS-H-paniculata_contig13924:2642..28551691480733.7178814-CDS-H-paniculata_contig13924:2642..2855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13924 2643..2855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13924.2404.1prot_H-paniculata_contig13924.2404.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13924 1751..2855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13924.2404.1

>prot_H-paniculata_contig13924.2404.1 ID=prot_H-paniculata_contig13924.2404.1|Name=mRNA_H-paniculata_contig13924.2404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp
LADGRVLLDAKLVSRQTVADHFVEEGTQGLHFCRLEPRLDDPPADQGATV
ELEELHQRTREMADRIMGPVRSQIVDRYGQMPAGAEPLSLWIASVLPMPV
RDRHALLSSTSTMVRLRACERHLASLDGSTPPAPPSRVPAAVIAEAYEAY
EAARHLGGDEAAAAAAAAAASAAAGAAGAGASVADDSAGGPEQRAGEVEG
GDAGAGRGGGAGVGPAGARGMEEEHEEEEVEE
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mRNA from alignment at H-paniculata_contig13924:1751..2855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13924.2404.1 ID=mRNA_H-paniculata_contig13924.2404.1|Name=mRNA_H-paniculata_contig13924.2404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1105bp|location=Sequence derived from alignment at H-paniculata_contig13924:1751..2855- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCCGATGGACGTGTCCTACTCGACGCGAAGCTGGTGTCGAGACAGAC
TGTAGCCGACCATTTCGTGGAGGAAGGCACCCAGGGGCTACACTTTTGCA
GGCTCGAGCCGAGGCTGGACGACCCTCCGGCCGACCAGGGCGCGACGGTG
GAGCTCGAAGAACTCCACCAACGGACGAGGGAAATGGCGGACCGTATCAT
GGGGCCAGTGAGAGTGCGTGCCGCGTATTTTAGTCAACCATTTTCCAAAT
AATAGAATGAAACTGCTTGTTTCGAGACGGGCCAGCAGACACGAATAAAA
TGACTTTCCCTTAGAGCAATGATCAGAACTGGCGGGGATATTACATCACT
CAGCTCCCCAATCGAAGTACGCCGAGATCTTATCACCCAATAGATATAAT
ACTTTCTTTTTCACAAGGAGATATCCGATTCTTTTCCACAAATTAGTTGA
TCGTTACTCTAGGGTTTTCCAACTGCAGTATCAAAAACTTGTGACGGTCT
TGCTGTAAGCATGCGATCTCCTCAACAGTGCTCCCTAGTCACCCCTTCCC
AACCCCTTGGCCCCCCCTTCCCTGGTATTCTCGTATGAAACATTCAAACT
CTTACCGTAAAAAAACACGCAGTCACAAATTGTGGACAGATACGGCCAAA
TGCCGGCCGGGGCCGAGCCCTTGTCCCTCTGGATAGCCTCGGTGCTCCCC
ATGCCGGTGCGCGACAGACACGCCCTCTTATCCAGCACCTCAACCATGGT
GCGCCTGCGAGCTTGTGAGCGCCACCTCGCCTCCCTGGACGGAAGCACGC
CGCCGGCACCCCCATCGCGCGTTCCTGCCGCCGTTATCGCCGAAGCTTAC
GAGGCCTACGAGGCTGCGCGGCACTTGGGTGGCGACGAAGCGGCGGCCGC
AGCAGCTGCCGCTGCTGCATCTGCCGCGGCTGGCGCCGCCGGCGCAGGTG
CATCAGTCGCCGATGATAGTGCCGGAGGTCCTGAACAGCGTGCCGGGGAG
GTTGAGGGCGGGGATGCTGGTGCCGGCAGAGGGGGGGGCGCGGGAGTAGG
ACCGGCGGGGGCACGAGGCATGGAAGAGGAACACGAGGAGGAAGAAGTGG
AGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13924:1751..2855-

>mRNA_H-paniculata_contig13924.2404.1 ID=mRNA_H-paniculata_contig13924.2404.1|Name=mRNA_H-paniculata_contig13924.2404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig13924:1751..2855- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCCGATGGACGTGTCCTACTCGACGCGAAGCTGGTGTCGAGACAGAC
TGTAGCCGACCATTTCGTGGAGGAAGGCACCCAGGGGCTACACTTTTGCA
GGCTCGAGCCGAGGCTGGACGACCCTCCGGCCGACCAGGGCGCGACGGTG
GAGCTCGAAGAACTCCACCAACGGACGAGGGAAATGGCGGACCGTATCAT
GGGGCCAGTGAGACTCGCCGATGGACGTGTCCTACTCGACGCGAAGCTGG
TGTCGAGACAGACTGTAGCCGACCATTTCGTGGAGGAAGGCACCCAGGGG
CTACACTTTTGCAGGCTCGAGCCGAGGCTGGACGACCCTCCGGCCGACCA
GGGCGCGACGGTGGAGCTCGAAGAACTCCACCAACGGACGAGGGAAATGG
CGGACCGTATCATGGGGCCAGTGAGATCACAAATTGTGGACAGATACGGC
CAAATGCCGGCCGGGGCCGAGCCCTTGTCCCTCTGGATAGCCTCGGTGCT
CCCCATGCCGGTGCGCGACAGACACGCCCTCTTATCCAGCACCTCAACCA
TGGTGCGCCTGCGAGCTTGTGAGCGCCACCTCGCCTCCCTGGACGGAAGC
ACGCCGCCGGCACCCCCATCGCGCGTTCCTGCCGCCGTTATCGCCGAAGC
TTACGAGGCCTACGAGGCTGCGCGGCACTTGGGTGGCGACGAAGCGGCGG
CCGCAGCAGCTGCCGCTGCTGCATCTGCCGCGGCTGGCGCCGCCGGCGCA
GGTGCATCAGTCGCCGATGATAGTGCCGGAGGTCCTGAACAGCGTGCCGG
GGAGGTTGAGGGCGGGGATGCTGGTGCCGGCAGAGGGGGGGGCGCGGGAG
TAGGACCGGCGGGGGCACGAGGCATGGAAGAGGAACACGAGGAGGAAGAA
GTGGAGGAGTCACAAATTGTGGACAGATACGGCCAAATGCCGGCCGGGGC
CGAGCCCTTGTCCCTCTGGATAGCCTCGGTGCTCCCCATGCCGGTGCGCG
ACAGACACGCCCTCTTATCCAGCACCTCAACCATGGTGCGCCTGCGAGCT
TGTGAGCGCCACCTCGCCTCCCTGGACGGAAGCACGCCGCCGGCACCCCC
ATCGCGCGTTCCTGCCGCCGTTATCGCCGAAGCTTACGAGGCCTACGAGG
CTGCGCGGCACTTGGGTGGCGACGAAGCGGCGGCCGCAGCAGCTGCCGCT
GCTGCATCTGCCGCGGCTGGCGCCGCCGGCGCAGGTGCATCAGTCGCCGA
TGATAGTGCCGGAGGTCCTGAACAGCGTGCCGGGGAGGTTGAGGGCGGGG
ATGCTGGTGCCGGCAGAGGGGGGGGCGCGGGAGTAGGACCGGCGGGGGCA
CGAGGCATGGAAGAGGAACACGAGGAGGAAGAAGTGGAGGAG
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