Homology
BLAST of mRNA_H-paniculata_contig1391.2395.1 vs. uniprot
Match:
D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI)
HSP 1 Score: 109 bits (272), Expect = 1.060e-20
Identity = 62/173 (35.84%), Postives = 93/173 (53.76%), Query Frame = 2
Query: 1667 LRLKLAGSGKLGCSAGGKKKREIVADDDQQVAALR-CPHADCRLRKECRLDPGSMSEHLAVHMRKAAEQQITRAYVRSTVAELLHELCTDVAVARREPTCVRRHTTSTLFGRTDQRLGFSAAMLETKVLGDIGNPAIRRCTSEIAFGSCEGVGSSDQIVRCDTCGAWSHVYCG 2182
+ ++ AG +LG A +++R + +++ V+ + CP DC + + M+ HL H + A E+ Y+RS+VAE+LHE+C D V R + RR + L +G A M+ET V GD +P +RRC ++A G CEG+ IVRCD C AW HV CG
Sbjct: 398 ITIERAGKRRLGVPA--EERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAGMIETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCG 568
BLAST of mRNA_H-paniculata_contig1391.2395.1 vs. uniprot
Match:
A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE)
HSP 1 Score: 98.2 bits (243), Expect = 3.070e-17
Identity = 61/173 (35.26%), Postives = 89/173 (51.45%), Query Frame = 2
Query: 1667 LRLKLAGSGKLGCSAGGKKKREIVADDDQQVAALR-CPHADCRLRKECRLDPGSMSEHLAVHMRKAAEQQITRAYVRSTVAELLHELCTDVAVARREPTCVRRHTTSTLFGRTDQRLGFSAAMLETKVLGDIGNPAIRRCTSEIAFGSCEGVGSSDQIVRCDTCGAWSHVYCG 2182
+ ++ AG +LG A +++R ++ +++ V+ R CP DC + + M+ HL H + A EQ Y+RS+VAE+LHE+C D V R + RR L +G A ++ET V GD +P +R E G CEG+ IVRCD C AW HV CG
Sbjct: 378 ITIERAGKRRLGVPA--EERRMMLGGENETVSPFRGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEQPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMARALLDTPRAGIGHLAGVMETMVTGDNKDPHVRHEPQE---GXCEGITREGTIVRCDKCMAWYHVSCG 545
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1391.2395.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.06e-20 / Id = 35.84 Expect = 3.07e-17 / Id = 35.26 Sequence D8LQA3_ECTSI A0A6H5L313_9PHAE
Match Name E-value Identity Description
D8LQA3_ECTSI 1.060e-20 35.84 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5L313_9PHAE 3.070e-17 35.26 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description Zinc finger, RING/FYVE/PHD-type Ec32 ortholog Ec-26_005550.1 Exons 6 Model size 2276 Cds size 2040 Stop 0 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1391.2395.1
>prot_H-paniculata_contig1391.2395.1 ID=prot_H-paniculata_contig1391.2395.1|Name=mRNA_H-paniculata_contig1391.2395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=680bp
MADLGDMADQLLQAASQLSPLPKTSGSSSSRARREHGRDDSLRGGRGRSL back to top mRNA from alignment at H-paniculata_contig1391:8012..16596+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1391.2395.1 ID=mRNA_H-paniculata_contig1391.2395.1|Name=mRNA_H-paniculata_contig1391.2395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8585bp|location=Sequence derived from alignment at H-paniculata_contig1391:8012..16596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)CCCCTTATATTAATCGGGGTGTAGTCATGACTTATTTCCTCACCTCACAA
AAGCTCGCTCAGCGCTCTGCCACAAACATACAGCCCTGAGGAGGTGAACG
TGAGGACTCAGCTGTTTTCTGAGTTTTGTTACAAACTCGGCGGATGCCTC
TTGAAGTCAAAG GTGATTCCGACTAACTAGCTAAGCCTCACTCTGTGTCG
CTGAAAGACGACAGTGTCAGTACAAACGGCACATGTACGCGAGGGGAGTG
AGTCTTAGGAAGGATTCCAAGGAAAGAAGTCAAAACTTTCTAAGCTTCCT
TCCTTCTAACCACGACTGACACCGCCAGAAGGGGGGCGTGGGCGGGGCCG
TGTCGACAACACTTCGATGACGAAACTCTGCTACCGAATTGAATCAATTT
CGGCAGTTATGAACTGTACCAAATGTGTGGTACTGGCAAGCATAGGTCAG
GAGCACAACGGTGAAGCGAAACAAGTTACGGTTCATCCCTCTGTGCCTTG
CATAAGACGGCAAGAGTTATCCACTCGTCTGATTTCATTTTTTTATTTTT
TTTGCACTGTCTGTTTCGCCTCTCGTAAACAGTACATGATTTTTCCTAAA
CTGGGCCAGTAAGTACAGATGATGTTATGGTTCAGCATCATGGGAGCCGC
GCGGATCGGCCTTCCTGACGTACCCGACTGTTTGAATTCCGAAGCCCCTG
TCCTACTTCCTTGTTGTATTGTTTCATTATCCGCTGCTGCTGCTGCTGCT
GTTGCTACTACTACCGCCGGAATCACAGAGAAGAATCCGCGAAAAGACGG
CTACGCTTGTGTCCGTTCAAAGAGACGGAGGTGAAACGAG GTAGGAAGCA
GAGAGCTACAGCCAAAATAGGTGCAGGCCTCGCCACCAATCTCTGTAGTG
CGCTTACACAAGGTATTTCTGGTTGCCGCAAATCTCGAAGGAATCGATTT
TCAAATGCGTTCCACGTCGGCATGTTCCATAGGACGAACCATGTTAAGGC
TCGTTCAGATATTCAATTTGTTGCCTGTGTATAGATTGGCCGACAGCCTT
CGTTCAGCCAACTCCAGCTTTTTTTTTTGGCGCTTTATAAAAATGTAAGC
AGAGGAAGAGATATCCTCGTTAGGTAACTGGTGTGCTAAATGTACACGGT
ACCGGCCCGCTTACAGGAAACTGTGGACTAAAAACCACGAACTTAATTTG
TGGCCTCAACCGAAATATAAGTTTTTACGAGGTAAATTTAATTAATACAA
AAGAGTTAATGCGTCCAGAGGAATATTTTCGTGTTTTCAAATGCTTAGGC
TCAAATTCTTGTGAGCCGGTTTCTTGAGAGCGGGCCGATATTGTATGTCG
ATACAAGCGAAGATATCCGCATTAGCGTGCGTGCCAGCCACACCTCCTGT
TGGATTGATTGCGCATTTAAAAAGTTGTGTTTGCTGCTACATGGACAAGA
AAAGGTATTTCGGGTTGTACATAGGTACTGTTGGAATTTTACAACAGAGC
GCCAAAGTTGTTGTGGGATGATATTTAACTGTGCTTTCTCATTGGCCGTA
AACTGGAATATGACTCAGGGATTCTGTATCGCTTCCTTCACACTCGACCG
CGAAGTGACTACCAGATATTATATTGTGACAACTTGAGTTTAATTTTCAA
CTATCGATTTTGTAAGTCATACATGAAGTGTAAAATACGAAAATGACGAA
TTCAGGATTCCAAGCTTCACGCTTCCCTGTCGCGGCGTGGGAATATTCGG
TAAATATTTCATTGGTCAAACAGAAGAGAAAAATTCAAAATAAAAACGAC
TGTCAGGAGTCGAGGACAGAAGCTCAGCCGAATAAAATTGAATCTGATTT
CTTTGATCCCGAAGAAGGTCCTCCCGTGTCCGTATCGGTCATTAGTGTTG
CTCATTTGGTTGAGTATGCCATGACTGCTACAGTAACGGTCCTTCAACAA
TGTCTCGTTCAAGGTTGATACGAGATCTTGTCGTTTGCGTAAGTATTCTA
GTCTCTGTAGTTCTTGTGTTCAGCTCTCGCCTCCACCTCATTGTTAACCC
TTTAGGAACTTCTGGTCCCGTAATTAGCTGTGGAATGCTTGCTTATATTC
CGACCGTTACGCAAAAAAACGGGTGTCTACCCGTTCTCGCTCTACATGAA
ATCCAGAACAAAAGCCCGCGAAACTGCATAAAACGGACCCCCTTTGCACC
TGAGATGCACCAACCAGCTGTCTATAGCTGATCAAGGTATTATTTTGATG
ACTGGTCGCAAGCAAATCTCTCTTTTGGCCGTTCGAAGTCCGGTTCCTTC
AGAATTATCGGCACGTAGAAGAAGTAAACGGCACTTTCCTGCATTACTGA
GATACAGTCGCGTCCACCTGGCCCCCCCCTCGCCCCTCCCATCCACCGTC
AACCACCTGCCTCCGTGATTCTCATCAATGCCGCTGGAATGTAGTATCAC
CAATA ATGGCAGACCTCGGCGACATGGCAGACCAACTGCTCCAGGCGGCA
TCACAGCTCTCCCCCCTACCGAAAACCTCCGGCAGCAGCAGCAGCAGAGC
TCGTCGAGAGCATGGTCGAGATGATTCGCTACGAGGAGGACGGGGGCGCA
GTCTCCCTCTCCAGCCCGGCCGCTCAACGGCCACCACCGTGCAGGACGAA
CCGGACTCGACTAGAAGCATCGTTAGACGCCGAGGAAACAGCCGGACTCC
TTCCTCTGCGTCTCTTTCCATCGCACAAGGAGTAACAAACGGAAGTCTCC
GTAGTGTGGCCAACCGTGGTGATGCGCCACAGCAGACGTTGATGGCAGCA
CGGCACGGGGATCACCATGGCCACGGACACCAACACCAACACCAGCACCG
CCACCAACAGGGGAGGGTCCAACCCCCAACTGGCGGCAGCGTCGACAGCG
ATCGCACTAGCAGTTACTTTGCCGAGAAGAGCGTTGGCAGCAGCACGGAT
CGAGGTCGAGACAGGGACAGCGAGAGAGACAACAGCCACCACCGAAGCAA
CGGCTACAACAACAAGAACTACGATGCCCCCAGGCGCAGTTCGTATGATG
GGGGTGGCAATCGCAGCCGAAGCAGCAGCCCAGCTTATTCCGGACTTGAT
ATTCAGGGACATGGCAGTGTTATGGACAACAAGAGAAGCAGCGGCGGTGG
GGAATGGCATTCGAGTGGCATATGCAGAAGCAGTAGCGCCGAAGGTGGTG
AAGATATAAATGGTATCGGCGATGGGAAGGAGCACGGTTGGCAGAACAGT
TTTGGCGGTGGCACCGTTCTCGATGAGCAGAACCGTGGTAATGGCACCAC
CGCCAGCGAAGCCTTCGAATCTCAGTTGCGGCGACCTCGCTCTGACTGTG
GCAGCGACATTGGTGGTGCGAGCGGTGGCGGCAGCGAAGAAAGGGCGAAT
GAGCTGATCCTTGTCGACTCTAATTCTGGGGAGGAAGAACAGCAGAACAC
TATTGGTGCGCATAAGCAAGATGAGCAGCAGCAGCAGCATTGCACATCAC
AAAAGCCGCCACATTCTCCTCCCCTTCCTCCTCCCACTCGTCGTCATGTC
AGTCCCTGCCGGCGTTTATCTGCCCAGTCCGACGGATCTCTCGCTAGCGG
CTCCTCATCTGGTAGCGGTGTCGATAGTAGCACTGCAAGAGAATCGTCGA
CATCGTCGCCGCCGCCGCAGGCGAAAGTGTCGCGGCAGGCGCTAGAGGAA
AGAAGGAGCAGCACTACTAACACCACCAATACCAATGTCAACAACAACAA
CAACAACAACAACACCGACACCGACACCGACACCAACACCACCAATAACA
ACAATGCTACGATCGGCGTGTCCGTTACCCCGGCTAACATTGTGACGGAA
GCGCTGCCGGTGTCTCGAGAGGCTGTCAAAGCCACGCTCAGGTTAAAACT
GGCAGGGTCAGGAAAACTGGGATGCTCGGCGGGCGGGAAAAAGAAGCGGG
AGATCGTGGCGGATGACGATCAACAGGTAGCAGCCTTGCGATGCCCTCAT
GCGGACTGCCGATTACGCAAAGAATGTCGCTTGGACCCAGGCTCGATGTC
GGAACATCTTGC GTGAGTGGTTTTGCTGATGAGTGTAGCCGGAGAGTGTG
GGGAGGGGGGCACAACCTTGTGGACGCGATTGGTAACTACCTCCCGGCTA
TGTAGTAGTTGGAGAACGTAAGCAGGGAAACACAAGGGATGTACCGTTGT
GTCGAAATGGTTCAGATACTGCTGTCGACGACGATTTGGGGACCTGTTGC
AGCATTTGTTTTCTGTTTTATATGTCCTCATATTTCGTCTACCTGTGACC
CCAAAGCGGGGGGAGCACACCCTGATCTGGACTTTGAAATATGTGCTCTA
TACTTCCATGTGCGGAAACGATCACCTCCTTTCCTTTGTATTAATTGAGA
AGTTGAGTTGATCACGATCTTAGTGCGGATATATTTAAGTGAATGTATTT
CGGTGACTGGGTAGAGAACGAAAATTCAATTCCATTCAATGTATTCATTA
AATTGCAAAATCACCAAACCATATACCCATCTTAAATTTATCGAGTGGTA
TCATTAGTCAAATTGTAAAATGCGTCAAATTATAAATCATCACAATCAAA
ATGTTTGAATTCCACTTGACAATGGACGCCACAACAGAGTGCACATGCGG
AAGGCAGCGGAACAGCAGATCACGAGGGCTTACGTTCGCTCCACCGTGGC
GGAATTGCTGCACGAGCTTTGCACGGATGTGGCCGTCGCCCGTCGTGAAC
CAACGTGTGTGCGACGCCACACGACCAG GTTCGTTTCTGTTTGCACTAAG
TACAGTGGGTATCCAGATTCAAGCCGGGTGTGTGACACATGGAATTTACC
TCCCTAAGTTCCGATCCGCCTGATTAGGGTTACTATATGCAGAGCAGATA
CAAGTTTTCCCTTTGGGACGTGGAGAACGAAGGGATTGCCAAGTGAGCGA
GGAGAGTGTATGCCGAAGCATCTCACAGAAGCAGACCGCCGTTGATGAGA
TATGGATACTATGTACATGAGATCGGATTGCGACGACTCCTTATCTAGTG
TAAGATTACCTTTTCCAGCAGCCACGTCCGAGACTACATGTTATCGGAAG
GCAAACGTAATAATAAAAATATATCCACATAGGTTGATACCATTCACAAA
ATCTGGAAGGGTCTAGGAAATTCAACATGGGGATCACACTTATTACAGGG
CGGTACGCATTATTACAGGACGGTACGCATTTATAGAAGTGTGCCGGTCT
GCAGTCAGCACAATACATACACGGCACAGAATATCGTGTCATGTATGCAC
ACGGACGTGCGCTAGAGTATTGAATTGTGCCACAACTTAATTGTCTACAG
ACAGTACAGTATATTGTAGTCTACGCCGGAGCATCTCACACTAATCCACA
TTTCATGTACTGCGGACATTCACCTTGAAAATACTCTGCGTGTTATATGT
ACGTACATAATGTGTAACAAGTTTAGTATCATTTGATGCCATAAAAAAAA
TCTGAAATGGTCCAGAAACGTGTAGCACAACATTGCAGTACAGGACAGTG
CATGATAGTGTATACAAAGGATTCAGTCAGTATACAGCCCAGTAGTCTAC
GTGGTACCTGTGCGGAGCTACTATATTGCTGTTGCGTTTGCAGTGTATTC
CAAAATTTCCGTGGCCCTCCTGTTGCGGCCCATCGCTCCTCTATGCGTTG
CCGTCATTCGTGTATTTCAGTCTAAAATCAATCGCACCCGCTTGCAGAAT
ACAACGCTGTCGTCACTCTTGCGTCAAGTCGCCGGTCAGCCATTAACTAA
CCCATGGCCAGAGTAGCGCGGCAGCGTACAAATGAACCACCGGCGCTGCT
CGCACACGCTCACCGCTGCAAGCCACGAGACGCGCCTACGCTCGCGAATC
CGGGGCGCGAGGCCGTTTAAAATAATGTTTTGAGTGTTTCTATCTATATA
AGCCGTGCCAAGCTTAAGTGACCCTGGATAAAATCCAGGTTGATCTTGAA
CATGATCGCCTTCAATTAGGATAAGCATGATGCATTCTCTTTTGCGGGTA
ATGGGTTGTTTACTCTAAATGGGATACAGTAACAACATCGTGACACTGAC
GTGGCTGTGCTCAAGTTGGTAGTAGATGAAATGAGCGGCGTTGTGTGGTA
TATAAATGCGCGTGTGTGTTTTCCAGGTGTTGTTCGTTGGTGTTCTGCTG
AATTGTTTGTTCGTCTTCGTGTGGGGTTTTCGCTGCTCATCAGTTAGCTT
GTTTTTGTTTAGCCCAATCTTGTTCCATGTTGCGTTCTTGATTAGTACTT
AAAATATCGAACAGTAACGCCATTGATGCGGTTGATTGACGTTCGATAAG
GATAGGTGAGCCTCGTGTTGCATGTATTGTCGTTATCCAATCCGGTTTTA
CAACCTTTCGAGATTCGCTGGTCGTGCGTCTCACCTGTGTTCATTCGCAT
AACGTACGGTGTACAAATAATATATTTTCTCTCATCTTGAAACACTGCAT
GTTCTACATCATCCTCCAACAAAAACGAAAGCCCTTACTGACAACTAAAT
ATAGTATGCGATATGCTTACAGCCGCTAGTCCATCACGCCTGCAGCACAA
CCAAACCCCTTTTCAGAAAACGATAGGTGTGACGATTGGTTCTCTTGGGA
TGTTATGTCGAAGAGATTGGCTCTGCACATCAACATGAGATTCAGAGACT
TGATCTTCGGTTCTCGCAATGTGAACTTAGGCCGTTCTGAGCGGGAAGGT
GCTCGATATAGTGGTTGACGGCTTTTCGTATTTTTTGTATGAAATGCGAA
CAACAGGGAGCCATACATTTCAACCGTCCATGCACGCTCAATGAAAATAA
GATAAAAAAAAAATCGGCTCTTTCAACCCCGACTCGATCCATTTAGCACC
GAAGTGGTCATTTCCGTGCTTGTCGTTTAAATTTTCGTGAAGATTTTGCA
AACAGCTTCCAACTTTCAGAAATGACCACCCCTTGGCGCTAAAAAGGTTT
ACGACCGTGACGTTCGTTCTGCACCCGAAGTTGAGTTTCAAGGGTTTATT
GATGAGGTTCTCATAACGTGGACTTGAAAAAGGAGTTGGCTTGACCCCGC
TGCTGACCCGCAAATAGTACCTTCATTTTATGGTCCCAATCGCCATATAC
ATGGTTGAAAAATGTCTTTTCTTTTTTTATTTGAGTTTTGAATGCCATAT
AAAATATCGTGTTTATTGTGCACCAGCAGTACGGATCTGAAAATGTGTCT
ACGTGGAAGTAACTTGATCGGACAGAAGTGGGGGCTCTGTGTGCACCACT
TTCAGGCTAAGAGGTTTCGATTATCTTGTTTTCTACGTGAACACAGTATT
TTCGATTTCAGTTTGTACTATCCCTCCAGGGTGATGACGCTTTTCCAATC
TCGATATTTTTTCTTGAAAACAAATCAACCTTCCTTTGCTGTTGAAAGAC
CCGCGGGCTTCGTCGATCGATAGATTTATAGATTTCGACGAGATCCGTGC
AACGACACAATTTTGGTGGCACTCCACAAGCGTCGTGGTTTTGGAAGAAA
TCTAGTGTTTAAACCTTTATCCCGTGGGGCGTTGTATACTGAAACATTCG
GCGGTGGTAGCCGTAATCCATTATGCCCTTCACGCCCACACGCCGATTGT
CTACGTGTCTTGTGGGGCTTGCAGTACGTTATTTGGACGTACGGATCAAC
GCTTGGGATTCTCGGCTGCTATGCTGGAGACAAAAGTGCTCGGAGACATC
GGCAACCCTGCCATCCG GTGAAGTTTCGTTTTTCATATTAGATGGTTGCA
GTAGTAGTAGTAGTAGTTGTTGTTGTCATTGTTCTTTTTCGATATACCAA
ACGATGAATTCTTGACATGCGTTACATTCTGATTGACTGTGTTGTACTTG
TACTCAGTGAGTGCATGTCTTTGTTGTGTGCATGTGCGTGTGTGTTTTTT
CAACCCACGCTCAGCTGCTATTGTAGCTCGTTCAATACATACAGTAGATG
GTCCTCCGCTGCGGTAGAACGCAGCTTGCACCCAATCACAACTTTTGAGC
CCTGGGGACCCGTACTTGTTGGTTCTTGAGTAGGAAATTTTCCAGTTCTC
AGTCCCGTAACAGTTGGCCTTGGAAAATTTCCCAAAATACGTCTTCTGTC
GCTATCACAGTAGGATCAATGTTTAAATAAGGCATTAGCTAATGACATGT
GGGTACAAGCTTGGCACTGCAGTACTGCACCTCACATACGGACGCCTGCT
TTACTACTGTGTGAAATATCGTTTTGATTGTTACTAGTAACAACACCACG
CTTCCCCTTCATCATCCCTTGCTCATCAAACTCGACCAACAACCGGCCGT
TACAACCTCCAACCAACCAACTAACCAACCAACCAGGCGCTGCACGTCCG
AGATAGCCTTCGGCTCCTGTGAGGGTGTCGGCTCGTCCGACCAGATCGTT
CGCTGTGACACCTGCGGCGCTTGGTCCCACGTCTATTGCGGCGGCGTGTC
GATCGGTGGCACCGTCGAACCGGTAATAGGATGGTCACATTCAACGCACC
CTAACGCGCTAGCCAGCGAAGTCTCTCAATGCTCC back to top Coding sequence (CDS) from alignment at H-paniculata_contig1391:8012..16596+
>mRNA_H-paniculata_contig1391.2395.1 ID=mRNA_H-paniculata_contig1391.2395.1|Name=mRNA_H-paniculata_contig1391.2395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4080bp|location=Sequence derived from alignment at H-paniculata_contig1391:8012..16596+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top