mRNA_H-paniculata_contig13906.2394.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: D7FQB2_ECTSI (Similar to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 3.580e-8 Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 Query: 1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVF 120 EA VLG+VED+ Q A++LDRTIFHPQGGGQPSD G Sbjct: 12 EATVLGVVEDDSQGS--AIILDRTIFHPQGGGQPSDEGTI 49
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A1Y2ARK4_9FUNG (tRNA_SAD domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2ARK4_9FUNG) HSP 1 Score: 54.3 bits (129), Expect = 2.880e-7 Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1 Query: 4 AQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASP-----LNVEACDWS 156 A+VL + + L ++LDRTIFHPQGGGQPSDTG P NVEA ++ Sbjct: 30 AKVLAVEPHDSSDKHLRIILDRTIFHPQGGGQPSDTGSIIFPETGLVFNVEALQYN 85
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A0F3IUY6_9PROT (Ala-tRNA(Pro) hydrolase n=1 Tax=Elstera litoralis TaxID=552518 RepID=A0A0F3IUY6_9PROT) HSP 1 Score: 53.5 bits (127), Expect = 5.440e-7 Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1 Query: 1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASPLNVE 141 +AQVL +VE E+ ++LDRT+F+P GGGQP DTGV SP E Sbjct: 26 DAQVLAVVETEKGA---EILLDRTLFYPNGGGQPGDTGVIVSPSGTE 69
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: L8GVN5_ACACA (Threonine/alanine tRNA ligase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVN5_ACACA) HSP 1 Score: 52.8 bits (125), Expect = 1.110e-6 Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1 Query: 52 AVVLDRTIFHPQGGGQPSDTGVFASPLNVE 141 AVVLDRTIFHPQGGGQP DTGV AS V+ Sbjct: 43 AVVLDRTIFHPQGGGQPFDTGVVASAAGVK 72
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: UPI00201A9A12 (LOW QUALITY PROTEIN: alanine--tRNA ligase n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201A9A12) HSP 1 Score: 52.4 bits (124), Expect = 1.380e-6 Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 Query: 1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASPLN 135 +A ++ L + E+ LA++LD TIFHPQGGGQP+DTG A+P N Sbjct: 21 KANIISLSKGEDGSR-LALILDSTIFHPQGGGQPADTGFIATPNN 64
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: UPI000D69D678 (LOW QUALITY PROTEIN: uncharacterized protein LOC8262433 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI000D69D678) HSP 1 Score: 52.4 bits (124), Expect = 1.710e-6 Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 Query: 1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASPLN 135 +A ++ L + E+ LA++LD TIFHPQGGGQP+DTG A+P N Sbjct: 73 KANIISLSKGEDGSR-LALILDSTIFHPQGGGQPADTGFIATPNN 116
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A7S0J6B0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J6B0_9EUKA) HSP 1 Score: 51.2 bits (121), Expect = 1.910e-6 Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 Query: 1 EAQVLGLVEDEEQRLPL-AVVLDRTIFHPQGGGQPSDTGVFASPLNVEACDW 153 +A+VL + +DE Q VVLD T+FHPQGGGQP+D G+ L +AC W Sbjct: 15 QARVLQVSKDESQEKGTWEVVLDATVFHPQGGGQPADRGL----LIADACKW 62
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A2P6QY99_ROSCH (Putative alanine--tRNA ligase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QY99_ROSCH) HSP 1 Score: 51.6 bits (122), Expect = 2.820e-6 Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 Query: 1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFA 123 +A ++ LV+ E+ R A+VLDRT+FHPQGGGQP+DTG A Sbjct: 21 DATLVALVKGEDGRT--ALVLDRTVFHPQGGGQPADTGFVA 59
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A0Q3I9G6_BRADI (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3I9G6_BRADI) HSP 1 Score: 51.6 bits (122), Expect = 2.860e-6 Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 Query: 1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFAS 126 +A VL L ++E R AVVLD TIFHPQGGGQP+DTGV ++ Sbjct: 23 QAAVLSLHQEEGGRR--AVVLDATIFHPQGGGQPADTGVISA 62
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: W9SEL4_9ROSA (Alanine--tRNA ligase n=1 Tax=Morus notabilis TaxID=981085 RepID=W9SEL4_9ROSA) HSP 1 Score: 48.9 bits (115), Expect = 2.970e-6 Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 Query: 1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFA 123 EA +L V+ ++ R A+VLDRT+FHPQGGGQP+D G A Sbjct: 20 EATILSYVKGDDGRH--ALVLDRTVFHPQGGGQPADLGFIA 58 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13906.2394.1 >prot_H-paniculata_contig13906.2394.1 ID=prot_H-paniculata_contig13906.2394.1|Name=mRNA_H-paniculata_contig13906.2394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASPLNVEACDback to top mRNA from alignment at H-paniculata_contig13906:6584..6742+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13906.2394.1 ID=mRNA_H-paniculata_contig13906.2394.1|Name=mRNA_H-paniculata_contig13906.2394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig13906:6584..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13906:6584..6742+ >mRNA_H-paniculata_contig13906.2394.1 ID=mRNA_H-paniculata_contig13906.2394.1|Name=mRNA_H-paniculata_contig13906.2394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig13906:6584..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |