mRNA_H-paniculata_contig13906.2394.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13906.2394.1
Unique NamemRNA_H-paniculata_contig13906.2394.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: D7FQB2_ECTSI (Similar to ATP binding / alanine-tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.580e-8
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVF 120
            EA VLG+VED+ Q    A++LDRTIFHPQGGGQPSD G  
Sbjct:   12 EATVLGVVEDDSQGS--AIILDRTIFHPQGGGQPSDEGTI 49          
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A1Y2ARK4_9FUNG (tRNA_SAD domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2ARK4_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 2.880e-7
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    4 AQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASP-----LNVEACDWS 156
            A+VL +   +     L ++LDRTIFHPQGGGQPSDTG    P      NVEA  ++
Sbjct:   30 AKVLAVEPHDSSDKHLRIILDRTIFHPQGGGQPSDTGSIIFPETGLVFNVEALQYN 85          
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A0F3IUY6_9PROT (Ala-tRNA(Pro) hydrolase n=1 Tax=Elstera litoralis TaxID=552518 RepID=A0A0F3IUY6_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 5.440e-7
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASPLNVE 141
            +AQVL +VE E+      ++LDRT+F+P GGGQP DTGV  SP   E
Sbjct:   26 DAQVLAVVETEKGA---EILLDRTLFYPNGGGQPGDTGVIVSPSGTE 69          
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: L8GVN5_ACACA (Threonine/alanine tRNA ligase subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVN5_ACACA)

HSP 1 Score: 52.8 bits (125), Expect = 1.110e-6
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1
Query:   52 AVVLDRTIFHPQGGGQPSDTGVFASPLNVE 141
            AVVLDRTIFHPQGGGQP DTGV AS   V+
Sbjct:   43 AVVLDRTIFHPQGGGQPFDTGVVASAAGVK 72          
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: UPI00201A9A12 (LOW QUALITY PROTEIN: alanine--tRNA ligase n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201A9A12)

HSP 1 Score: 52.4 bits (124), Expect = 1.380e-6
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASPLN 135
            +A ++ L + E+    LA++LD TIFHPQGGGQP+DTG  A+P N
Sbjct:   21 KANIISLSKGEDGSR-LALILDSTIFHPQGGGQPADTGFIATPNN 64          
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: UPI000D69D678 (LOW QUALITY PROTEIN: uncharacterized protein LOC8262433 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI000D69D678)

HSP 1 Score: 52.4 bits (124), Expect = 1.710e-6
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASPLN 135
            +A ++ L + E+    LA++LD TIFHPQGGGQP+DTG  A+P N
Sbjct:   73 KANIISLSKGEDGSR-LALILDSTIFHPQGGGQPADTGFIATPNN 116          
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A7S0J6B0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J6B0_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 1.910e-6
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    1 EAQVLGLVEDEEQRLPL-AVVLDRTIFHPQGGGQPSDTGVFASPLNVEACDW 153
            +A+VL + +DE Q      VVLD T+FHPQGGGQP+D G+    L  +AC W
Sbjct:   15 QARVLQVSKDESQEKGTWEVVLDATVFHPQGGGQPADRGL----LIADACKW 62          
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A2P6QY99_ROSCH (Putative alanine--tRNA ligase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QY99_ROSCH)

HSP 1 Score: 51.6 bits (122), Expect = 2.820e-6
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFA 123
            +A ++ LV+ E+ R   A+VLDRT+FHPQGGGQP+DTG  A
Sbjct:   21 DATLVALVKGEDGRT--ALVLDRTVFHPQGGGQPADTGFVA 59          
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: A0A0Q3I9G6_BRADI (AA_TRNA_LIGASE_II_ALA domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3I9G6_BRADI)

HSP 1 Score: 51.6 bits (122), Expect = 2.860e-6
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFAS 126
            +A VL L ++E  R   AVVLD TIFHPQGGGQP+DTGV ++
Sbjct:   23 QAAVLSLHQEEGGRR--AVVLDATIFHPQGGGQPADTGVISA 62          
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Match: W9SEL4_9ROSA (Alanine--tRNA ligase n=1 Tax=Morus notabilis TaxID=981085 RepID=W9SEL4_9ROSA)

HSP 1 Score: 48.9 bits (115), Expect = 2.970e-6
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFA 123
            EA +L  V+ ++ R   A+VLDRT+FHPQGGGQP+D G  A
Sbjct:   20 EATILSYVKGDDGRH--ALVLDRTVFHPQGGGQPADLGFIA 58          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13906.2394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB2_ECTSI3.580e-867.50Similar to ATP binding / alanine-tRNA ligase n=1 T... [more]
A0A1Y2ARK4_9FUNG2.880e-748.21tRNA_SAD domain-containing protein n=1 Tax=Rhizocl... [more]
A0A0F3IUY6_9PROT5.440e-753.19Ala-tRNA(Pro) hydrolase n=1 Tax=Elstera litoralis ... [more]
L8GVN5_ACACA1.110e-680.00Threonine/alanine tRNA ligase subfamily protein n=... [more]
UPI00201A9A121.380e-653.33LOW QUALITY PROTEIN: alanine--tRNA ligase n=1 Tax=... [more]
UPI000D69D6781.710e-653.33LOW QUALITY PROTEIN: uncharacterized protein LOC82... [more]
A0A7S0J6B0_9EUKA1.910e-650.00Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A2P6QY99_ROSCH2.820e-658.54Putative alanine--tRNA ligase n=1 Tax=Rosa chinens... [more]
A0A0Q3I9G6_BRADI2.860e-661.90AA_TRNA_LIGASE_II_ALA domain-containing protein n=... [more]
W9SEL4_9ROSA2.970e-656.10Alanine--tRNA ligase n=1 Tax=Morus notabilis TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13906contigH-paniculata_contig13906:6584..6742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.7127798-CDS-H-paniculata_contig13906:6583..67421622929104.7127798-CDS-H-paniculata_contig13906:6583..6742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13906 6584..6742 +
1691480733.159559-CDS-H-paniculata_contig13906:6583..67421691480733.159559-CDS-H-paniculata_contig13906:6583..6742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13906 6584..6742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13906.2394.1prot_H-paniculata_contig13906.2394.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13906 6584..6742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13906.2394.1

>prot_H-paniculata_contig13906.2394.1 ID=prot_H-paniculata_contig13906.2394.1|Name=mRNA_H-paniculata_contig13906.2394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
EAQVLGLVEDEEQRLPLAVVLDRTIFHPQGGGQPSDTGVFASPLNVEACD
WS*
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mRNA from alignment at H-paniculata_contig13906:6584..6742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13906.2394.1 ID=mRNA_H-paniculata_contig13906.2394.1|Name=mRNA_H-paniculata_contig13906.2394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig13906:6584..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCACAGGTGCTAGGCTTGGTCGAAGATGAAGAGCAACGACTACCGCT CGCTGTAGTCTTGGACAGGACCATTTTCCATCCACAGGGTGGCGGACAAC CAAGTGACACTGGTGTGTTCGCCTCGCCGTTAAATGTTGAAGCATGCGAT TGGTCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13906:6584..6742+

>mRNA_H-paniculata_contig13906.2394.1 ID=mRNA_H-paniculata_contig13906.2394.1|Name=mRNA_H-paniculata_contig13906.2394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig13906:6584..6742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCACAGGTGCTAGGCTTGGTCGAAGATGAAGAGCAACGACTACCGCT
CGCTGTAGTCTTGGACAGGACCATTTTCCATCCACAGGGTGGCGGACAAC
CAAGTGACACTGGTGTGTTCGCCTCGCCGTTAAATGTTGAAGCATGCGAT
TGGTCGTGAGAGGCACAGGTGCTAGGCTTGGTCGAAGATGAAGAGCAACG
ACTACCGCTCGCTGTAGTCTTGGACAGGACCATTTTCCATCCACAGGGTG
GCGGACAACCAAGTGACACTGGTGTGTTCGCCTCGCCGTTAAATGTTGAA
GCATGCGATTGGTCGTGA
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