mRNA_H-paniculata_contig1390.2390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1390.2390.1
Unique NamemRNA_H-paniculata_contig1390.2390.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: D8LLU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLU5_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 6.660e-59
Identity = 95/159 (59.75%), Postives = 118/159 (74.21%), Query Frame = 1
Query:    7 TDTYCQAVAVLLCPCSFLPLIPGVMGKKRLLLEEEEAVLTSDCSWGC--HEVSRMPYGELGNVREARVCCCVGFSSNLTP--GDGGLGKTIIPGNCCETALVAEIVRNLKARMKDRGDTGQIQRAEENVRQIQHLHAKIDALMERLQVAAVPMPIAIDR 471
            TDTYCQ   ++ CP ++  + PGV+GKK L+LEEEEA+LT DC   C  H V+  PYGELG+V    VCC VGF+SNL+P   +GG    IIPGNCCETALV EIV  LK RMK RGDTGQI+RAEEN+++I+HLHAKIDA+ME L + AV  P+ ++R
Sbjct:   17 TDTYCQCCLIITCPLTWAAICPGVLGKKILVLEEEEAILTQDC---CIYHSVAHRPYGELGSVERENVCCFVGFTSNLSPTKSEGGGQAAIIPGNCCETALVNEIVEELKKRMKHRGDTGQIKRAEENLKEIRHLHAKIDAVMEHLNIPAVQAPMEMNR 172          
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: A0A7S3F1E5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F1E5_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 9.640e-24
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 1
Query:   76 VMGKKRLLLEEEEAV--LTSDCSWGCHEVSRMPYGELGNVREARVC-CCVGFSSNLTPGDGGLGKTIIPGNCCETALVAEIVRNLKARMKDRGDTGQIQRAEEN---VRQIQH----LHAKIDALMERLQVAAVPMPIAIDR 471
            V+  + L LE EE V  ++S C     +V RMPYG+LG+V +A  C CC+   SNLTP   G  +TI PG  CETALV EIV  LKARMK RGDTG I+RAE+    V ++Q+    L AK+DA++  L +   P P  ++R
Sbjct:   45 VLCPQTLDLEPEEVVYKISSPCDT---KVKRMPYGQLGSVDKATACGCCIAVDSNLTP---GAEETIAPGCGCETALVEEIVAELKARMKARGDTGNIKRAEQTLEIVAKVQNDVADLTAKVDAILAHLNI---PAPAKMER 177          
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: R1BM26_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BM26_EMIHU)

HSP 1 Score: 99.0 bits (245), Expect = 2.750e-23
Identity = 70/164 (42.68%), Postives = 97/164 (59.15%), Query Frame = 1
Query:    7 TDTYCQAVAVLLC--PCSFLPLIPGVMGKKRLLLEEEEAVLTSDCSWGCHEVSRMPYGELGNVREARVC-CCVGFSSNLTPGDGGLGKTIIPGNCCETALVAEIVRNLKARMKDRGDTGQIQRAEENVRQIQH-------LHAKIDALMERLQVAA-VPMPIAI 465
            T+T    +A + C  PC+       +M K++L+LE EEAVL +      +   R PYGELG+V ++  C CCVG SS       GLG  + PG  CE  LVAEIV  LK RMK RGDTGQIQRAE+ + +I         L++K+DA++  L+++A VP  +A+
Sbjct:   17 TNTLANTIAAM-CGWPCA-------LMNKQQLILEPEEAVLITSTMCDTN-TQRRPYGELGSVDKSSTCGCCVGVSS-------GLGA-MQPGCNCEEELVAEIVEELKKRMKTRGDTGQIQRAEQQLTEIMKVQSDMAALNSKVDAILAHLEISAPVPQAMAV 163          
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: A0A7S4B582_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B582_CHRCT)

HSP 1 Score: 99.0 bits (245), Expect = 2.750e-23
Identity = 64/132 (48.48%), Postives = 81/132 (61.36%), Query Frame = 1
Query:   85 KKRLLLEEEEAVLTSDCSWGCHEVSRMPYGELGNVREARVC-CCVGFSSNLTPGDGGLGKTIIPGNCCETALVAEIVRNLKARMKDRGDTGQIQRAEENVRQIQ-------HLHAKIDALMERLQVAAVPMP 456
            ++RL+LE EEAVLT       + V R PYGELG+V +A  C CC   SSNL P        I PG  CE  LV EIV  LK RMK RGDTGQIQRAE+ + +I        +++AK+DA+++ L +AA P P
Sbjct:   40 EQRLVLEPEEAVLTKKTLCDTN-VQRRPYGELGSVDKATSCGCCAAVSSNLGP--------ISPGFGCEAELVDEIVEELKKRMKTRGDTGQIQRAEQQLHEIAILKGEVANVNAKLDAVLQHLNIAA-PQP 161          
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: A0A7S0J3X5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J3X5_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 6.610e-22
Identity = 63/139 (45.32%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   46 PCSFLPLIPGVMGKKRLLLEEEEAVLTSDCSWGCHEVSRMPYGELGNVREARVC-CCVGFSSNLTPGDGGLGKTIIPGNCCETALVAEIVRNLKARMKDRGDTGQIQRAEEN---VRQIQ----HLHAKIDALMERLQV 438
            PCSFL        ++ L+LE EEAV+T     G + V R PYGELG+V +   C CC   +S L P        I PG  CE ALV E+V  LKARMK RGDTGQI+RAE+    + Q+Q     L+ K+D +M  LQ+
Sbjct:   44 PCSFL-------NEEHLVLEPEEAVMTRKTMCGTN-VQRRPYGELGSVDKGTACGCCTNVTSGLGP--------ISPGWGCEEALVDELVEELKARMKTRGDTGQIKRAEQQLDAITQVQLDIKQLNTKLDVIMAHLQI 166          
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: A0A7S2EYK2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EYK2_TRICV)

HSP 1 Score: 95.9 bits (237), Expect = 6.630e-22
Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   49 CSFLPLIPGVMG----KKRLLLEEEEAVLTSDCSWGCHEVSRMPYGELGNVREARVCCCVGFSSNLTPGDGGLGKTIIPGNCCETALVAEIVRNLKARMKDRGDTGQIQRAEENVRQIQHLHAKIDALMERLQVAAVPMPIAIDR 471
            C +L   P   G      +LLLE EE V T     G   VSR PYGELG+V +   CC V  +S        LG+ I PG  C+ + V EIV  LKARM+ RGDT QIQRAEE ++++  L  KID +M+ L++   P P  +DR
Sbjct:   50 CCWLAFFPFTFGTIPYSTKLLLEHEEIVKTDQNLCG-KTVSRRPYGELGSVDKGNFCCFVAATS-------ALGE-ISPGCGCDNSRVDEIVTELKARMRGRGDTAQIQRAEEQLKRLDDLETKIDLIMDHLEI---PKPDKMDR 182          
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: A0A7S2ME03_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2ME03_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.170e-19
Identity = 56/129 (43.41%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   55 FLPLIPGVMGKKRLL-LEEEEAVLTSDCSWGCHEVSRMPYGELGNVREARVCCCVGFSSNLTPGDGGLGKTIIPGNCCETALVAEIVRNLKARMKDRGDTGQIQRAEENVRQIQHLHAKIDALMERLQV 438
            F PL  G +  + +L LE+EEAV T     G    SR PYGELG+V +A   CCV  +S L            PG  C  A V EIVR L+ RMK RGDT QIQ++E+ + ++  L  KID +ME L +
Sbjct:   24 FCPLTLGAVPYQTILVLEKEEAVRTDKSICGASS-SRRPYGELGSVDKANCLCCVQATSEL--------GEFSPGWGCNEATVDEIVRELRTRMKTRGDTAQIQQSEKQLEKLAELETKIDLIMEHLNI 143          
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: A0A7S2U9S9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9S9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.230e-19
Identity = 56/137 (40.88%), Postives = 77/137 (56.20%), Query Frame = 1
Query:   61 PLIPGVMGKKRLLLEEEEAVLTSDCSWGCHEVSRMPYGELGNVREARVCCCVGFSSNLTPGDGGLGKTIIPGNCCETALVAEIVRNLKARMKDRGDTGQIQRAEENVRQIQHLHAKIDALMERLQVAAVPMPIAIDR 471
            P   G +  K  L+ + E V  +D +     VSR PYGELG+V ++   CC   +S       GLG+ I PG  C+   V EIV +LK RMK RGDTGQI RAEE + +I  L AK+D +++ L +   P P  ++R
Sbjct:   25 PFTVGAVPYKTTLMLDGEEVNKTDVNLCGKTVSRRPYGELGSVDKSNCLCCYSVTS-------GLGE-IAPGCGCDEQKVDEIVSDLKQRMKGRGDTGQIARAEEQLDKIAQLEAKVDLILDHLNI---PQPNEMNR 150          
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: A0A1Z5JJP7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJP7_FISSO)

HSP 1 Score: 87.8 bits (216), Expect = 4.330e-19
Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   49 CSFLPLIPGVMG----KKRLLLEEEEAVLTSDCSWGCHEVSRMPYGELGNVREARVCCCVGFSSNLTPGDGGLGKTIIPGNCCETALVAEIVRNLKARMKDRGDTGQIQRAEENVRQIQHLHAKIDALMERLQV 438
            C +L L+P   G    K  LLL++EE   T     G H  S+ PYGELG++ +A  CC V   S       G G+ I PG  CE   V EIV  LK RM+ RGDT QI RAEE + ++  + AK+DA++  L +
Sbjct:   17 CCWLTLLPCTFGVVPYKTTLLLKQEEVTKTDIDLCGRH-TSKRPYGELGHIEKANCCCFVSVRS-------GFGE-ISPGCGCEKDTVDEIVLELKQRMRARGDTAQIVRAEETLSKLGEIEAKLDAILSHLNI 141          
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Match: A0A8J2SJ06_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ06_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.450e-13
Identity = 58/145 (40.00%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   64 LIPGVMG-----KKRLLLEEEEA--VLTSDCSWGCHEVSRMPYGELGNVREARVC-CCVGFSSNLTPGDGGLGKTIIPGNC-CETALVAEIVRNLKARMKDRGDTGQIQRAEENVRQIQHLHA-------KIDALMERLQVAAVP 450
            +IPG++      +++L LE EEA  V T+ CS    +  R PYGEL  V   R   CC  F            +T +   C C   LVAEIV+ LK RMK RGDTGQI+RAE+ + +IQ L A       K+DA+++ L + A P
Sbjct:   63 IIPGIIPLCCTLEQKLFLEPEEAHLVTTTCCST---QTQRRPYGELQAVEHLRCLGCCHCFQ---------FAETKVSPQCFCAGDLVAEIVKELKTRMKARGDTGQIKRAEQLLGEIQILKAQAQSTDAKLDAILKHLNIDAPP 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1390.2390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LLU5_ECTSI6.660e-5959.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3F1E5_9EUKA9.640e-2447.18Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
R1BM26_EMIHU2.750e-2342.68Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
A0A7S4B582_CHRCT2.750e-2348.48Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0J3X5_9EUKA6.610e-2245.32Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S2EYK2_TRICV6.630e-2243.45Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2ME03_9STRA2.170e-1943.41Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2U9S9_9STRA2.230e-1940.88Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1Z5JJP7_FISSO4.330e-1941.79Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A8J2SJ06_9STRA2.450e-1340.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1390contigH-paniculata_contig1390:3599..4075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue2.4e-46
Seed eggNOG ortholog2880.D8LLU5
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E66V@1,2SCXY@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_003150.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size477
Cds size477
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.4369586-CDS-H-paniculata_contig1390:3598..40751622929104.4369586-CDS-H-paniculata_contig1390:3598..4075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1390 3599..4075 -
1691480733.0466263-CDS-H-paniculata_contig1390:3598..40751691480733.0466263-CDS-H-paniculata_contig1390:3598..4075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1390 3599..4075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1390.2390.1prot_H-paniculata_contig1390.2390.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1390 3599..4075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1390.2390.1

>prot_H-paniculata_contig1390.2390.1 ID=prot_H-paniculata_contig1390.2390.1|Name=mRNA_H-paniculata_contig1390.2390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MQTDTYCQAVAVLLCPCSFLPLIPGVMGKKRLLLEEEEAVLTSDCSWGCH
EVSRMPYGELGNVREARVCCCVGFSSNLTPGDGGLGKTIIPGNCCETALV
AEIVRNLKARMKDRGDTGQIQRAEENVRQIQHLHAKIDALMERLQVAAVP
MPIAIDRK*
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mRNA from alignment at H-paniculata_contig1390:3599..4075-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1390.2390.1 ID=mRNA_H-paniculata_contig1390.2390.1|Name=mRNA_H-paniculata_contig1390.2390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at H-paniculata_contig1390:3599..4075- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAACAGACACATACTGCCAAGCGGTCGCGGTCCTGCTGTGCCCTTG CTCGTTCCTCCCGCTAATTCCCGGCGTTATGGGTAAAAAGCGTCTTCTGC TTGAAGAGGAGGAAGCAGTGCTGACGTCAGACTGCTCCTGGGGTTGCCAC GAGGTATCCCGCATGCCCTACGGCGAGCTTGGAAACGTCCGTGAAGCGAG GGTCTGCTGTTGTGTCGGATTCAGCTCTAACCTGACCCCGGGAGACGGAG GTTTGGGGAAAACTATCATTCCGGGTAACTGTTGCGAGACGGCCCTCGTC GCAGAGATCGTGCGTAATCTAAAGGCCAGGATGAAAGACCGTGGAGACAC CGGGCAAATACAGAGGGCGGAGGAGAATGTCCGTCAGATCCAACATCTGC ACGCTAAGATCGACGCCCTAATGGAACGCTTGCAGGTCGCCGCCGTTCCT ATGCCCATAGCAATCGATCGCAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1390:3599..4075-

>mRNA_H-paniculata_contig1390.2390.1 ID=mRNA_H-paniculata_contig1390.2390.1|Name=mRNA_H-paniculata_contig1390.2390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig1390:3599..4075- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAACAGACACATACTGCCAAGCGGTCGCGGTCCTGCTGTGCCCTTG
CTCGTTCCTCCCGCTAATTCCCGGCGTTATGGGTAAAAAGCGTCTTCTGC
TTGAAGAGGAGGAAGCAGTGCTGACGTCAGACTGCTCCTGGGGTTGCCAC
GAGGTATCCCGCATGCCCTACGGCGAGCTTGGAAACGTCCGTGAAGCGAG
GGTCTGCTGTTGTGTCGGATTCAGCTCTAACCTGACCCCGGGAGACGGAG
GTTTGGGGAAAACTATCATTCCGGGTAACTGTTGCGAGACGGCCCTCGTC
GCAGAGATCGTGCGTAATCTAAAGGCCAGGATGAAAGACCGTGGAGACAC
CGGGCAAATACAGAGGGCGGAGGAGAATGTCCGTCAGATCCAACATCTGC
ACGCTAAGATCGACGCCCTAATGGAACGCTTGCAGGTCGCCGCCGTTCCT
ATGCCCATAGCAATCGATCGCAAGTGAATGCAAACAGACACATACTGCCA
AGCGGTCGCGGTCCTGCTGTGCCCTTGCTCGTTCCTCCCGCTAATTCCCG
GCGTTATGGGTAAAAAGCGTCTTCTGCTTGAAGAGGAGGAAGCAGTGCTG
ACGTCAGACTGCTCCTGGGGTTGCCACGAGGTATCCCGCATGCCCTACGG
CGAGCTTGGAAACGTCCGTGAAGCGAGGGTCTGCTGTTGTGTCGGATTCA
GCTCTAACCTGACCCCGGGAGACGGAGGTTTGGGGAAAACTATCATTCCG
GGTAACTGTTGCGAGACGGCCCTCGTCGCAGAGATCGTGCGTAATCTAAA
GGCCAGGATGAAAGACCGTGGAGACACCGGGCAAATACAGAGGGCGGAGG
AGAATGTCCGTCAGATCCAACATCTGCACGCTAAGATCGACGCCCTAATG
GAACGCTTGCAGGTCGCCGCCGTTCCTATGCCCATAGCAATCGATCGCAA
GTGA
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