mRNA_H-paniculata_contig13859.2366.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13859.2366.1
Unique NamemRNA_H-paniculata_contig13859.2366.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13859.2366.1 vs. uniprot
Match: D8LMZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 5.370e-6
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:    1 DLQACVDTFDQVCSNTRCTCTERGLMWDICLD--FKSCPELPGTSTTLLVSSVMLLVLALDSALIFLLGIKCHFFGGGV 231
            D++ C      VC    CTC+   L+WD+C      SC  +   +  LL SSV+LL LAL SA++   GIK  F GGGV
Sbjct:  159 DVEMCASDVRSVCQE--CTCSSSNLLWDMCFPPLNGSCGGIEFAAAPLLASSVVLLALALVSAVLLATGIKVKFLGGGV 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13859.2366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMZ5_ECTSI5.370e-641.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13859contigH-paniculata_contig13859:2549..4278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size455
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.494852-CDS-H-paniculata_contig13859:2548..26281622929101.494852-CDS-H-paniculata_contig13859:2548..2628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13859 2549..2628 +
1691480731.795399-CDS-H-paniculata_contig13859:2548..26281691480731.795399-CDS-H-paniculata_contig13859:2548..2628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13859 2549..2628 +
1622929101.5136878-CDS-H-paniculata_contig13859:3905..42781622929101.5136878-CDS-H-paniculata_contig13859:3905..4278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13859 3906..4278 +
1691480731.80376-CDS-H-paniculata_contig13859:3905..42781691480731.80376-CDS-H-paniculata_contig13859:3905..4278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13859 3906..4278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13859.2366.1prot_H-paniculata_contig13859.2366.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13859 2549..4278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13859.2366.1

>prot_H-paniculata_contig13859.2366.1 ID=prot_H-paniculata_contig13859.2366.1|Name=mRNA_H-paniculata_contig13859.2366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
DLQACVDTFDQVCSNTRCTCTERGLMWDICLDFKSCPELPGTSTTLLVSS
VMLLVLALDSALIFLLGIKCHFFGGGVAGCGGGGIAGAEGLFSSTHINND
NGDIIANNKSVPNKRVFPSSGIGSKGGVILEEDEETSSTGDGAMPVNSGG
*
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mRNA from alignment at H-paniculata_contig13859:2549..4278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13859.2366.1 ID=mRNA_H-paniculata_contig13859.2366.1|Name=mRNA_H-paniculata_contig13859.2366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1730bp|location=Sequence derived from alignment at H-paniculata_contig13859:2549..4278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTCCAGGCTTGTGTGGACACCTTCGACCAGGTGTGCTCGAACACGCG
ATGTACTTGCACGGAGCGAGGCCTGATGTGGTGGGTGACCATGGCCTCTC
GGCACAATACTGAGTGCGTTCCGACCATATACTGCGTTGACCCTTGGGGA
GTCGGACCTTGTAACGATCAAGAGATGAATTTACTAACAACCAGTCGTGA
ATAATGATCTATACGAATACGTGTGCAGGGTCCTACATCAGGTCTAGACA
GCTGGTTAGTGCATCTCGGGCACCATAAGGGGTCGTTTGTTTTGTTGCTT
GTGGCCGTTTTATCTTGGATTCAGCCTGGTGTATAATAGCAAAAGCGGGC
GGGCGTCGTGCTTGCTTCGTAATTTCGGAATAAAAAACAATATTGCACAG
CAAATTAGGGAGTCACAAGTTCATCAAGGGTTAGAACGAATGAAGGACAC
GGCGGCATCCAACTTATGTTCACTGACTATGTGCACAACTGCTAAATAAT
TGAAGTTACATTTGCTCTAAAGTAAGACCGGTGCAACGCGATAAGTGAAA
AAGATTAGGATGCAACGTACTACCGAGCCAACTTGCAATGCTACCAGAGT
TTGATGGACAATGTCACCTTCTTGTCATGCTGTTACTTGTGAATACGTTT
AATGAAACTGTATTGAATAAATCGACAAAAACAAAATCAAATCCACAAAA
CAGATATGAATATCTGACTCTTGCAGCATTACGAAGTGACAACGGAGTTT
GCTTGTTTTTTCTTGTGTGTGCGCGTGTGCTGGGCCCGCCATTGATACTC
TGTTCTCCTCTCATGGTTTTACTGCTGCTGTCCTGGAGTTTTAGTCTCCG
TGTGCTGCGCTGCACTGTAGACTCGCCAATTTTTGAAAAAAAATAAAAAC
AAAGCTCGCGCGATACACCCCCCACCCCTCCTTTTCACCGGACGATAACG
ATCAAAACTCGTGGTTGATGGGAAATGACGACATGCTTCCACCTCGCACA
ATATGCCCAATGAAAACCTAGTCACCCCTCCACACGTGAGACCTAAACCG
AAGCATCATTACACTTGCACTCTAGTGTGTGATTAAGTAGTCTAGAATAG
ATAATGACATTAGTGTTGTTAATGTAATCAATGTTAGCTTTGAACCACTG
ATGTGATCACATCGCGAAAATAGCATACAACTCAGACAGTATACCCCTTC
ACGTTCACGGCTGACTGCAAAATACACGAAAATACAGCCGCAAATCCTTC
ATTCGCTACCGTTGTATTTCGGCTTATTTTATCCATGCCAACAAACCTAC
AACGCACACGCACACGCACACGCACACGCACACGCACGCGCATGCGCACA
CGCACAGGGACATTTGCTTGGACTTCAAAAGCTGCCCGGAGCTACCAGGT
ACATCGACGACCCTCCTCGTCTCGAGTGTGATGCTCCTGGTGCTCGCGTT
AGATTCGGCCCTCATCTTCCTCCTGGGAATCAAGTGTCACTTTTTCGGCG
GGGGTGTGGCCGGTTGCGGCGGCGGGGGTATTGCTGGGGCAGAAGGCCTC
TTCTCCTCAACGCACATAAATAATGACAACGGGGATATCATCGCGAACAA
CAAGTCTGTACCCAACAAGCGCGTTTTCCCGAGCTCCGGCATAGGCAGCA
AGGGCGGGGTAATCTTGGAGGAGGATGAGGAAACGTCTTCAACAGGAGAC
GGTGCGATGCCGGTGAACAGCGGGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13859:2549..4278+

>mRNA_H-paniculata_contig13859.2366.1 ID=mRNA_H-paniculata_contig13859.2366.1|Name=mRNA_H-paniculata_contig13859.2366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig13859:2549..4278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTCCAGGCTTGTGTGGACACCTTCGACCAGGTGTGCTCGAACACGCG
ATGTACTTGCACGGAGCGAGGCCTGATGTGGACCTCCAGGCTTGTGTGGA
CACCTTCGACCAGGTGTGCTCGAACACGCGATGTACTTGCACGGAGCGAG
GCCTGATGTGGGACATTTGCTTGGACTTCAAAAGCTGCCCGGAGCTACCA
GGTACATCGACGACCCTCCTCGTCTCGAGTGTGATGCTCCTGGTGCTCGC
GTTAGATTCGGCCCTCATCTTCCTCCTGGGAATCAAGTGTCACTTTTTCG
GCGGGGGTGTGGCCGGTTGCGGCGGCGGGGGTATTGCTGGGGCAGAAGGC
CTCTTCTCCTCAACGCACATAAATAATGACAACGGGGATATCATCGCGAA
CAACAAGTCTGTACCCAACAAGCGCGTTTTCCCGAGCTCCGGCATAGGCA
GCAAGGGCGGGGTAATCTTGGAGGAGGATGAGGAAACGTCTTCAACAGGA
GACGGTGCGATGCCGGTGAACAGCGGGGGGTGAGGACATTTGCTTGGACT
TCAAAAGCTGCCCGGAGCTACCAGGTACATCGACGACCCTCCTCGTCTCG
AGTGTGATGCTCCTGGTGCTCGCGTTAGATTCGGCCCTCATCTTCCTCCT
GGGAATCAAGTGTCACTTTTTCGGCGGGGGTGTGGCCGGTTGCGGCGGCG
GGGGTATTGCTGGGGCAGAAGGCCTCTTCTCCTCAACGCACATAAATAAT
GACAACGGGGATATCATCGCGAACAACAAGTCTGTACCCAACAAGCGCGT
TTTCCCGAGCTCCGGCATAGGCAGCAAGGGCGGGGTAATCTTGGAGGAGG
ATGAGGAAACGTCTTCAACAGGAGACGGTGCGATGCCGGTGAACAGCGGG
GGGTGA
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