prot_H-paniculata_contig13859.2366.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13859.2366.1
Unique Nameprot_H-paniculata_contig13859.2366.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length151
Homology
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BLAST of mRNA_H-paniculata_contig13859.2366.1 vs. uniprot
Match: D8LMZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 5.370e-6
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 0 
Query:    1 DLQACVDTFDQVCSNTRCTCTERGLMWDICLD--FKSCPELPGTSTTLLVSSVMLLVLALDSALIFLLGIKCHFFGGGV 77
            D++ C      VC    CTC+   L+WD+C      SC  +   +  LL SSV+LL LAL SA++   GIK  F GGGV
Sbjct:  159 DVEMCASDVRSVCQE--CTCSSSNLLWDMCFPPLNGSCGGIEFAAAPLLASSVVLLALALVSAVLLATGIKVKFLGGGV 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13859.2366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMZ5_ECTSI5.370e-641.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 69..150
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..68
NoneNo IPR availableTMHMMTMhelixcoord: 46..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13859contigH-paniculata_contig13859:2549..4278 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13859.2366.1mRNA_H-paniculata_contig13859.2366.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13859 2549..4278 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13859.2366.1 ID=prot_H-paniculata_contig13859.2366.1|Name=mRNA_H-paniculata_contig13859.2366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
DLQACVDTFDQVCSNTRCTCTERGLMWDICLDFKSCPELPGTSTTLLVSS
VMLLVLALDSALIFLLGIKCHFFGGGVAGCGGGGIAGAEGLFSSTHINND
NGDIIANNKSVPNKRVFPSSGIGSKGGVILEEDEETSSTGDGAMPVNSGG
*
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