mRNA_H-paniculata_contig13824.2347.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13824.2347.1
Unique NamemRNA_H-paniculata_contig13824.2347.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.140e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 MRLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL 180
            M+L K+  GL QS   W  TID  L EIGF  LKSD CVY+   +NT+ +LTLY DD+L+
Sbjct:  445 MKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLI 504          
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.110e-10
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL-GKD 189
            +L ++  GL QS   W+ TID+ L  IGF+  +SDPCVY+    +T+ ILTLY +D+L+ GKD
Sbjct:  525 KLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKD 587          
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.680e-9
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL 180
            +L ++  GL QS + W  T+D+ LT  G+K  +SDPCVYV +  N+I ILT+Y DD+L+
Sbjct:  331 KLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILI 389          
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: S0F301_CHOCR (RNA-dependent DNA polymerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F301_CHOCR)

HSP 1 Score: 59.3 bits (142), Expect = 1.120e-8
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    4 RLLKNSCGLRQSTSSWWGTIDKHL-TEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL-GKDL 192
            +LLK   GL+Q+   W   ID+ L TE+GF + +SDPC+Y+    N I I+ LY DD+LL G DL
Sbjct:  991 KLLKAIYGLKQAHRQWHSKIDEFLITELGFNTTRSDPCLYIRRQGNVIMIIALYVDDLLLAGSDL 1055          
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: Q4JQ38_SCIVE (Reverse transcriptase (Fragment) n=1 Tax=Sciadopitys verticillata TaxID=28979 RepID=Q4JQ38_SCIVE)

HSP 1 Score: 55.8 bits (133), Expect = 4.010e-8
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL 180
            RL+K+  GL+Q+  +W+  ID HL + GF+   SDP +YV S  ++I IL +Y DDV++
Sbjct:   86 RLVKSLYGLKQAPRAWYIKIDAHLKDSGFRRSMSDPNLYVKSTEDSIVILVVYVDDVVI 144          
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-7
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL 180
            RL K   GL+QS   W   + + LTE+G+K L++DPCVY+      + I+T++ DD+LL
Sbjct:  114 RLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQIITVWVDDLLL 172          
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A6H5JV98_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV98_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 4.270e-6
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   28 LRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL-GKD 189
            L QS   W+ TI   LT IGFK  +SDP V+V    +T+ ILTL  DD+L+ GKD
Sbjct:  857 LSQSPVLWFNTIGDVLTVIGFKPTQSDPFVFVYGSGDTLVILTLCIDDILISGKD 911          
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 51.6 bits (122), Expect = 5.870e-6
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSN-TIAILTLYADDVLL 180
            RL K   GL+QS   W   + + LTE+G+K L++DPCVY+       + I+T++ DD+LL
Sbjct: 1049 RLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLL 1108          
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A177VH83_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VH83_9BASI)

HSP 1 Score: 51.2 bits (121), Expect = 8.040e-6
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    1 MRLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSN-TIAILTLYADDVLL 180
            +R+ +   G +Q+   WW   D  +  +GFKS+ SDPC+Y+ +G N     L LY DD+L+
Sbjct: 1040 LRMRRALYGYKQAGRLWWKKFDDMVKGMGFKSIASDPCIYIRTGDNGKHTYLLLYVDDILI 1100          
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: R7QN15_CHOCR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN15_CHOCR)

HSP 1 Score: 50.8 bits (120), Expect = 1.090e-5
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    4 RLLKNSCGLRQSTSSWWGTIDKHLT-EIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL-GKDL 192
            +LLK   GL+Q+   W   +D  L  E+GF++ +SD C+Y+    NTI ++ LY DD+LL G D+
Sbjct:  572 KLLKALYGLKQAHRQWHTKVDDFLLGELGFETSRSDLCLYIKRIGNTIMLIALYVDDLLLAGSDI 636          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE2.140e-1153.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9R3_9PHAE9.110e-1047.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KTY2_9PHAE1.680e-947.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
S0F301_CHOCR1.120e-847.69RNA-dependent DNA polymerase n=1 Tax=Chondrus cris... [more]
Q4JQ38_SCIVE4.010e-844.07Reverse transcriptase (Fragment) n=1 Tax=Sciadopit... [more]
A0A401GXA0_9APHY1.570e-742.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV98_9PHAE4.270e-650.91Peptidase A2 domain-containing protein n=1 Tax=Ect... [more]
A0A401GYH9_9APHY5.870e-641.67Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A177VH83_9BASI8.040e-637.70Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
R7QN15_CHOCR1.090e-541.54Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13824contigH-paniculata_contig13824:5838..6035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929098.881564-CDS-H-paniculata_contig13824:5837..60351622929098.881564-CDS-H-paniculata_contig13824:5837..6035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13824 5838..6035 +
1691480730.9236655-CDS-H-paniculata_contig13824:5837..60351691480730.9236655-CDS-H-paniculata_contig13824:5837..6035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13824 5838..6035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13824.2347.1prot_H-paniculata_contig13824.2347.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13824 5838..6035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13824.2347.1

>prot_H-paniculata_contig13824.2347.1 ID=prot_H-paniculata_contig13824.2347.1|Name=mRNA_H-paniculata_contig13824.2347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MRLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAI
LTLYADDVLLGKDLLR
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mRNA from alignment at H-paniculata_contig13824:5838..6035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13824.2347.1 ID=mRNA_H-paniculata_contig13824.2347.1|Name=mRNA_H-paniculata_contig13824.2347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig13824:5838..6035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCTTCTGAAGAACAGCTGTGGTCTTCGCCAGAGCACATCGAGCTG GTGGGGGACTATCGATAAACATCTGACGGAGATCGGTTTCAAAAGCCTCA AGTCAGACCCGTGCGTTTATGTCTGTTCAGGAAGCAACACCATCGCCATT TTGACCCTGTACGCCGACGACGTTCTTCTCGGAAAAGACCTACTTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig13824:5838..6035+

>mRNA_H-paniculata_contig13824.2347.1 ID=mRNA_H-paniculata_contig13824.2347.1|Name=mRNA_H-paniculata_contig13824.2347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig13824:5838..6035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCTTCTGAAGAACAGCTGTGGTCTTCGCCAGAGCACATCGAGCTG
GTGGGGGACTATCGATAAACATCTGACGGAGATCGGTTTCAAAAGCCTCA
AGTCAGACCCGTGCGTTTATGTCTGTTCAGGAAGCAACACCATCGCCATT
TTGACCCTGTACGCCGACGACGTTCTTCTCGGAAAAGACCTACTTCGCAT
GAGGCTTCTGAAGAACAGCTGTGGTCTTCGCCAGAGCACATCGAGCTGGT
GGGGGACTATCGATAAACATCTGACGGAGATCGGTTTCAAAAGCCTCAAG
TCAGACCCGTGCGTTTATGTCTGTTCAGGAAGCAACACCATCGCCATTTT
GACCCTGTACGCCGACGACGTTCTTCTCGGAAAAGACCTACTTCGC
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