mRNA_H-paniculata_contig13824.2347.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 2.140e-11 Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 1 MRLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL 180 M+L K+ GL QS W TID L EIGF LKSD CVY+ +NT+ +LTLY DD+L+ Sbjct: 445 MKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLI 504
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 9.110e-10 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL-GKD 189 +L ++ GL QS W+ TID+ L IGF+ +SDPCVY+ +T+ ILTLY +D+L+ GKD Sbjct: 525 KLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKD 587
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 1.680e-9 Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL 180 +L ++ GL QS + W T+D+ LT G+K +SDPCVYV + N+I ILT+Y DD+L+ Sbjct: 331 KLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILI 389
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: S0F301_CHOCR (RNA-dependent DNA polymerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F301_CHOCR) HSP 1 Score: 59.3 bits (142), Expect = 1.120e-8 Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1 Query: 4 RLLKNSCGLRQSTSSWWGTIDKHL-TEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL-GKDL 192 +LLK GL+Q+ W ID+ L TE+GF + +SDPC+Y+ N I I+ LY DD+LL G DL Sbjct: 991 KLLKAIYGLKQAHRQWHSKIDEFLITELGFNTTRSDPCLYIRRQGNVIMIIALYVDDLLLAGSDL 1055
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: Q4JQ38_SCIVE (Reverse transcriptase (Fragment) n=1 Tax=Sciadopitys verticillata TaxID=28979 RepID=Q4JQ38_SCIVE) HSP 1 Score: 55.8 bits (133), Expect = 4.010e-8 Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1 Query: 4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL 180 RL+K+ GL+Q+ +W+ ID HL + GF+ SDP +YV S ++I IL +Y DDV++ Sbjct: 86 RLVKSLYGLKQAPRAWYIKIDAHLKDSGFRRSMSDPNLYVKSTEDSIVILVVYVDDVVI 144
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 55.5 bits (132), Expect = 1.570e-7 Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1 Query: 4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL 180 RL K GL+QS W + + LTE+G+K L++DPCVY+ + I+T++ DD+LL Sbjct: 114 RLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQIITVWVDDLLL 172
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A6H5JV98_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV98_9PHAE) HSP 1 Score: 52.0 bits (123), Expect = 4.270e-6 Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1 Query: 28 LRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL-GKD 189 L QS W+ TI LT IGFK +SDP V+V +T+ ILTL DD+L+ GKD Sbjct: 857 LSQSPVLWFNTIGDVLTVIGFKPTQSDPFVFVYGSGDTLVILTLCIDDILISGKD 911
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 51.6 bits (122), Expect = 5.870e-6 Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1 Query: 4 RLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSN-TIAILTLYADDVLL 180 RL K GL+QS W + + LTE+G+K L++DPCVY+ + I+T++ DD+LL Sbjct: 1049 RLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLL 1108
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: A0A177VH83_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VH83_9BASI) HSP 1 Score: 51.2 bits (121), Expect = 8.040e-6 Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 1 Query: 1 MRLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSN-TIAILTLYADDVLL 180 +R+ + G +Q+ WW D + +GFKS+ SDPC+Y+ +G N L LY DD+L+ Sbjct: 1040 LRMRRALYGYKQAGRLWWKKFDDMVKGMGFKSIASDPCIYIRTGDNGKHTYLLLYVDDILI 1100
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Match: R7QN15_CHOCR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN15_CHOCR) HSP 1 Score: 50.8 bits (120), Expect = 1.090e-5 Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1 Query: 4 RLLKNSCGLRQSTSSWWGTIDKHLT-EIGFKSLKSDPCVYVCSGSNTIAILTLYADDVLL-GKDL 192 +LLK GL+Q+ W +D L E+GF++ +SD C+Y+ NTI ++ LY DD+LL G D+ Sbjct: 572 KLLKALYGLKQAHRQWHTKVDDFLLGELGFETSRSDLCLYIKRIGNTIMLIALYVDDLLLAGSDI 636 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13824.2347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13824.2347.1 >prot_H-paniculata_contig13824.2347.1 ID=prot_H-paniculata_contig13824.2347.1|Name=mRNA_H-paniculata_contig13824.2347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp MRLLKNSCGLRQSTSSWWGTIDKHLTEIGFKSLKSDPCVYVCSGSNTIAIback to top mRNA from alignment at H-paniculata_contig13824:5838..6035+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13824.2347.1 ID=mRNA_H-paniculata_contig13824.2347.1|Name=mRNA_H-paniculata_contig13824.2347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig13824:5838..6035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13824:5838..6035+ >mRNA_H-paniculata_contig13824.2347.1 ID=mRNA_H-paniculata_contig13824.2347.1|Name=mRNA_H-paniculata_contig13824.2347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig13824:5838..6035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |