mRNA_H-paniculata_contig13806.2337.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13806.2337.1
Unique NamemRNA_H-paniculata_contig13806.2337.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13806.2337.1 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.210e-10
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 REQLGGNKFLLSDGLFIAKSLNRTLVEYPVKDAR 102
            REQLGGNKFL+SDG+F+AK+L RT VEYPVKDAR
Sbjct:  247 REQLGGNKFLVSDGIFMAKALGRTFVEYPVKDAR 280
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BLAST of mRNA_H-paniculata_contig13806.2337.1 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.670e-10
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 REQLGGNKFLLSDGLFIAKSLNRTLVEYPVKDAR 102
            REQLGGNKFL++DG+F+AK+L RT VEYPVKDAR
Sbjct:  122 REQLGGNKFLVTDGIFMAKALGRTFVEYPVKDAR 155
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BLAST of mRNA_H-paniculata_contig13806.2337.1 vs. uniprot
Match: D8LFR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 9.440e-9
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 REQLGGNKFLLSDGLFIAKSLNRTLVEYPVKDAR 102
            REQLG N++LLSDGL+IAK+LNRTLVE+PV +AR
Sbjct:  154 REQLGSNRYLLSDGLYIAKTLNRTLVEFPVANAR 187
[Close]
BLAST of mRNA_H-paniculata_contig13806.2337.1 vs. uniprot
Match: A0A6H5KP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 9.440e-9
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 REQLGGNKFLLSDGLFIAKSLNRTLVEYPVKDAR 102
            REQLG N++LLSDGL+IAK+LNRTLVE+PV +AR
Sbjct:  152 REQLGSNRYLLSDGLYIAKTLNRTLVEFPVANAR 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13806.2337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JCA8_9PHAE2.210e-1082.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN55_ECTSI5.670e-1079.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFR0_ECTSI9.440e-976.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP62_9PHAE9.440e-976.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13806contigH-paniculata_contig13806:6503..6604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929097.7646065-CDS-H-paniculata_contig13806:6502..66041622929097.7646065-CDS-H-paniculata_contig13806:6502..6604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13806 6503..6604 -
1691480730.3926878-CDS-H-paniculata_contig13806:6502..66041691480730.3926878-CDS-H-paniculata_contig13806:6502..6604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13806 6503..6604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13806.2337.1prot_H-paniculata_contig13806.2337.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13806 6503..6604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13806.2337.1

>prot_H-paniculata_contig13806.2337.1 ID=prot_H-paniculata_contig13806.2337.1|Name=mRNA_H-paniculata_contig13806.2337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=34bp
REQLGGNKFLLSDGLFIAKSLNRTLVEYPVKDAR
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mRNA from alignment at H-paniculata_contig13806:6503..6604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13806.2337.1 ID=mRNA_H-paniculata_contig13806.2337.1|Name=mRNA_H-paniculata_contig13806.2337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=102bp|location=Sequence derived from alignment at H-paniculata_contig13806:6503..6604- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAGCAATTGGGTGGCAACAAGTTCCTGCTGTCGGACGGACTGTTTAT
CGCGAAGTCGTTAAATCGGACGTTGGTGGAGTATCCCGTCAAGGACGCCA
GG
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Coding sequence (CDS) from alignment at H-paniculata_contig13806:6503..6604-

>mRNA_H-paniculata_contig13806.2337.1 ID=mRNA_H-paniculata_contig13806.2337.1|Name=mRNA_H-paniculata_contig13806.2337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at H-paniculata_contig13806:6503..6604- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAGCAATTGGGTGGCAACAAGTTCCTGCTGTCGGACGGACTGTTTAT
CGCGAAGTCGTTAAATCGGACGTTGGTGGAGTATCCCGTCAAGGACGCCA
GGAGGGAGCAATTGGGTGGCAACAAGTTCCTGCTGTCGGACGGACTGTTT
ATCGCGAAGTCGTTAAATCGGACGTTGGTGGAGTATCCCGTCAAGGACGC
CAGG
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