mRNA_H-paniculata_contig13803.2336.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13803.2336.1
Unique NamemRNA_H-paniculata_contig13803.2336.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: A0A401H2X4_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H2X4_9APHY)

HSP 1 Score: 154 bits (390), Expect = 8.200e-42
Identity = 103/289 (35.64%), Postives = 144/289 (49.83%), Query Frame = 1
Query:    1 DLCSLSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGK---VKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGIPFGG--KSNEP-----------KVHNR---------IRFQAERWCNKLL--VTWSSTEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTKGLSRVQFQR 786
            DL     +LG+E+ RDRP  ++ +SQ   + + L +YG  +CR V TP+      VK+S +E   KP          Y+  +GSLMYA  G  PD+A+ +   ++    P +E      R++RYL    D  + + G  K  EP            +++R         I   A  W +K       SSTEAEY A     KE V LR  L  IG   +G   L  DN+SAI LSK +  H RTKHI VR+H IRE    G +  +YV TG+Q+ D+LTKGL R + ++
Sbjct:   26 DLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQYGMADCRPVSTPMAQNQKLVKLSEAEIDPKP----------YQSALGSLMYAMIGTHPDLAFTVSALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKEPLLGYVDADWAANINDRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRTFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHEK 304          
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: D1MBJ6_AGABI (Polyprotein n=1 Tax=Agaricus bisporus var. bisporus TaxID=192523 RepID=D1MBJ6_AGABI)

HSP 1 Score: 159 bits (402), Expect = 1.500e-40
Identity = 101/275 (36.73%), Postives = 147/275 (53.45%), Query Frame = 1
Query:    1 DLCSLSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGKVKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGIPFGGKSNEPK---------VHNR---------IRFQAERWCNKL--LVTWSSTEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTKGL 765
            DL  +  +LGIE+RR+R  G + +SQ S I   L+RYGF++ + V  P+   + +S ++S +  +E        Y+  VGSLMYA+   RPDIA+AI   ++  ++P ++     KR+FRYL    +L + FGG+ +  K           +R         I   A  W  K   +VT S+TE+EY AA  A KET+ LR L+  +         LF DN+SAI L+K    H RTKHI +R+H IR  + +G + L Y  T D + D LTK L
Sbjct: 1109 DLGEIHWLLGIEIRRNREEGKLYMSQRSYIDSCLRRYGFEDAKPVSIPMDPSIHLSTNQSPNSTTEIARMARIPYQEAVGSLMYAAIATRPDIAFAIQVLSKFSKNPGEKHWEAVKRVFRYLKGTRELWLTFGGQDDTLKGFADADGNMAEDRHATSGFAFIINGGAVSWSAKRQEIVTLSTTESEYVAATHAAKETLWLRSLISQVFNITLPTTRLFSDNQSAIALTKDHQFHSRTKHIDIRYHFIRWIVEEGKIRLVYCPTEDMVADTLTKAL 1383          
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 157 bits (396), Expect = 9.100e-40
Identity = 104/289 (35.99%), Postives = 144/289 (49.83%), Query Frame = 1
Query:    1 DLCSLSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGK---VKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGIPFGGKSNEPK-------------VHNR---------IRFQAERWCNKLL--VTWSSTEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTKGLSRVQFQR 786
            DL     +LG+E+ RDRP  ++ +SQ   + + L ++G   CR V TP+      VK+S +E   KP          Y+  +GSLMYA  G RPD+A+ +   ++    P +E      R++RYL    D  + + G + E K             V+NR         I   A  W +K       SSTEAEY A     KE V LR  L  IG   +G   L  DN+SAI LSK +  H RTKHI VR+H IRE    G +  +YV TG+Q+ D+LTKGL R + ++
Sbjct:  826 DLGEARWLLGMEIARDRPRRVLELSQHQYVEKCLAQHGMANCRPVSTPMAQNQKLVKLSEAEIDPKP----------YQSALGSLMYAMIGTRPDLAFTVGALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKKPLLRYVDADWAANVNNRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRAFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHEK 1104          
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 156 bits (395), Expect = 1.240e-39
Identity = 102/284 (35.92%), Postives = 142/284 (50.00%), Query Frame = 1
Query:    1 DLCSLSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGKVKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGIPFGGKS----------------NEPKVHNRIRFQ----AERWCNKLLVTW--SSTEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTKGLSRVQFQR 786
            DL  +  VLG+EV RDR    I +SQ   + E+L+R G+ + R + TP        A+E   K   P+    T Y+  +GSLMYA  G RPD+AY +   ++    P +       R F+YL    D  + F GK                 N+ +  +   F     A  W +K   T   SSTEAEY AA  A KE   LR  LG IG  C+    L  DN+SA+ +++    H RTKHI VR+H +RE +  G + L+YV TGDQ+ D+LTKGL + +  +
Sbjct:  851 DLGEVHWVLGLEVIRDRNARTIALSQRRYVEEILERAGYSDARPIATPA------LANEHMAKVDAPEVDVLT-YQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQRALVRAFKYLRGTADYQLVFDGKKPWELTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 156 bits (394), Expect = 1.750e-39
Identity = 100/287 (34.84%), Postives = 148/287 (51.57%), Query Frame = 1
Query:    1 DLCSLSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGKVKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGIPFGGK--------------SNEPKVHNRIR---FQAE----RWCNKL--LVTWSSTEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTKGLSRVQFQRLR 792
            DL  +S +LG+ ++RDR +  +TISQ   +  VLKR+  +EC+ V TP+    +        +P+     N  EY+ ++G L Y +T  RPD+A A+   ++ M  P QE     KRI RY+    + GI F  K              +N+ +         FQ       WC+K    V+ SSTEAEY A   A +E + LR LL +IG   +    +  DN++AI LS+    H RTKHI V +H +RE ++   + + Y +T + L DILTKGL R  F++LR
Sbjct: 1063 DLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPA-----NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDVVYCRTDEMLADILTKGLPRQTFEKLR 1344          
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 154 bits (389), Expect = 8.050e-39
Identity = 94/285 (32.98%), Postives = 148/285 (51.93%), Query Frame = 1
Query:   13 LSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGKVKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGIPFGGKSNEPKVHNRIRFQAERWCNKL----------------LVTWS----------STEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTKGLSRVQFQRL 789
            L+  LG+++  D+  G + I+Q   + +VLK++  D C  + TP+  K+ I   ++  + ++P       YR +VGSLMYA  G RPD++YA++   R    P +   +  KR+ RY+    + G+ F  +SN  ++   I F    W +                  LV+WS          STEAEY A   A  E + +R+LL  +     G   LF DN+ AI+LS     H R+KHI  + H +RE +++G++ LKY+ T +QL D+LTKGL   +F+RL
Sbjct: 1000 LNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIEE-DNKQECNQP-------YRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYVKGTLNNGLCFHRQSNSTEL---IGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAVSNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREKVKEGLIELKYIPTSNQLADLLTKGLGNERFKRL 1273          
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: A0A8H7KIG6_AGABI (Integrase catalytic domain-containing protein n=2 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7KIG6_AGABI)

HSP 1 Score: 154 bits (388), Expect = 1.110e-38
Identity = 100/275 (36.36%), Postives = 142/275 (51.64%), Query Frame = 1
Query:    1 DLCSLSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGKVKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGIPFGGKSNEPK---------VHNR---------IRFQAERWCNKL--LVTWSSTEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTKGL 765
            DL  +  +LGIE+RRDR  G + +SQ S I   L+RYGF++ + V  P+   +  S ++S    +E        Y+  VGSLMYA+   RPDIA+AI   ++  ++P  +     KR+FRYL    +L + FGG+ +  +           +R         I   A  W  K   +VT S+TE+EY A   A KE + LR L+  I         LF DN+SAI L+K    H RTKHI +R+H IR  + +G + L Y  T D + D LTK L
Sbjct: 1107 DLGEIHWLLGIEIRRDRNEGKLYMSQRSYIDSCLRRYGFEDAKPVSIPMDPSIHYSTNQSPKSTAEIARMARIPYQEAVGSLMYAAIATRPDIAFAIQVLSKFSKNPGIDHWEAVKRVFRYLKGTKELWLTFGGQGDTLEGFADADGNMAEDRHAISGFAFIINGGAVSWSAKRQEIVTLSTTESEYVAVTHATKEALWLRSLISQIFGAILPTTPLFSDNQSAIALTKDHKYHGRTKHIDIRYHFIRWIVEEGKVRLVYCPTADMIADTLTKAL 1381          
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: A0A6D2J1R0_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J1R0_9BRAS)

HSP 1 Score: 153 bits (386), Expect = 2.040e-38
Identity = 99/275 (36.00%), Postives = 145/275 (52.73%), Query Frame = 1
Query:    1 DLCSLSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGKVKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGI----------------PFGGKSNEPKVHNRIRF----QAERWCNKL--LVTWSSTEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTK 759
            DL + SR+LGI+++RDR  G++ +SQ   + +V+KR+   E + V TP+GG  K+SA       SE        Y   VGSLMYA  G RPD+AYAI   +R M  P        K + RY+    DL +                 F G  +  ++ +   F        W + L  +   S+TEAEY A  EA KE + ++ L+  +GF    +AT++ D++SAI LSK S  H RTKHI V++H IR+ I +G +A++ + T +   DILTK
Sbjct: 1070 DLGAASRILGIDIKRDRKEGVLWLSQSGYLGKVIKRFNMVEAKTVNTPMGGHFKLSAVSDA---SECVDTEKVPYSSAVGSLMYAMVGTRPDLAYAIGLVSRFMSKPGSIHWEAVKWLLRYVKRSSDLSLVFRRNKDFRVQGYCDSDFAGDLDRKRLTSGYVFTVGGNTVSWRSGLQQITALSTTEAEYIALTEAVKEAIWIKGLVKDMGFE-EEKATIWCDSQSAICLSKNSTFHERTKHIAVKYHFIRDIIEEGEVAVEKIDTSENPADILTK 1340          
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 153 bits (386), Expect = 2.100e-38
Identity = 104/284 (36.62%), Postives = 142/284 (50.00%), Query Frame = 1
Query:    1 DLCSLSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGK---VKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGIPFGG--KSNEP-----------KVHNR---------IRFQAERWCNKLL--VTWSSTEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTKGLSR 771
            DL     +LG+E+ RDRP  ++ +SQ   + + L ++G  +CR V TP+      VK+S +E   KP          Y+ ++GSLMYA  G RPD+A+ +   ++    P +E      R +RYL    D  + + G  K  EP            V++R         I   A  W +K       SSTEAEY A     KE V LR  L  IG   +G   L  DN+SAI LSK +  H RTKHI VR+H IRE    G +  +YV TG+Q+ D+LTKGL R
Sbjct: 1149 DLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQHGMADCRPVSTPMAQNQKLVKLSEAEIDPKP----------YQSVLGSLMYAMIGTRPDLAFTVGALSQHAATPGKEHWIALMRAYRYLRGTADKKLVYCGTTKEKEPLLGYVDADWAANVNDRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRAFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPR 1422          
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS)

HSP 1 Score: 148 bits (373), Expect = 2.590e-38
Identity = 101/283 (35.69%), Postives = 147/283 (51.94%), Query Frame = 1
Query:    1 DLCSLSRVLGIEVRRDRPNGIITISQGSNIREVLKRYGFDECRGVPTPVGGKVKISASESTHKPSEPKSGNSTEYRGMVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPDLGI----------------PFGGKSNEPKVHNRIRFQAE----RWCNKL--LVTWSSTEAEYDAAGEAGKETVCLRELLGSIGFGCRGRATLF*DNKSAIYLSKGSGAHCRTKHIGVRWHGIREWIRKGILALKYVQTGDQLTDILTKGLSRVQFQ 783
            D+   SR+LGI++RRDR  G++ +SQ S + +V++++   E + V TP+GG  K+SA     + SE        Y  +VGS+MYA  G RPDIAYAI   +  M  P        K + RY+    DL +                 F G  ++ K  +   F        W + L  +VT S+ EAEY A  EA KE + ++ LL ++GFG   RA ++ D++SAI LSK +  H RTKHI  ++H IRE I +G + +  V T     DILTK +    F+
Sbjct:  129 DMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLSA---VTEDSECIDTEKYPYSSVVGSIMYAMIGTRPDIAYAIGLVSMFMSKPGMMHWEAVKWLLRYIKGSSDLEVVFTKNKNFNIQGYCDSDFAGDRDKRKSTSGYVFTVGGNTISWRSNLQPVVTLSTIEAEYIALTEAVKEAIWIKGLLKNMGFG-EERAMVWCDSQSAICLSKNNVFHERTKHISYKYHFIREVIEEGEVEVSKVHTSVNPADILTKSVRVSTFE 407          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13803.2336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401H2X4_9APHY8.200e-4235.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
D1MBJ6_AGABI1.500e-4036.73Polyprotein n=1 Tax=Agaricus bisporus var. bisporu... [more]
A0A401H123_9APHY9.100e-4035.99Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y9ZY34_9AGAM1.240e-3935.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9IUY0_PARCT1.750e-3934.84Retrovirus-related Pol poly from transposon TNT 1-... [more]
J9KJ72_ACYPI8.050e-3932.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7KIG6_AGABI1.110e-3836.36Integrase catalytic domain-containing protein n=2 ... [more]
A0A6D2J1R0_9BRAS2.040e-3836.00Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A401G4V0_9APHY2.100e-3836.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2KZJ0_9BRAS2.590e-3835.69Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13803contigH-paniculata_contig13803:4133..5062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score69.7
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog7070.TC009115-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons4
Model size801
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13803.2336.1prot_H-paniculata_contig13803.2336.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13803 4424..4858 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929097.6335702-UTR-H-paniculata_contig13803:4132..43351622929097.6335702-UTR-H-paniculata_contig13803:4132..4335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13803 4133..4335 +
1691480730.3339024-UTR-H-paniculata_contig13803:4132..43351691480730.3339024-UTR-H-paniculata_contig13803:4132..4335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13803 4133..4335 +
1622929097.648619-UTR-H-paniculata_contig13803:4395..44231622929097.648619-UTR-H-paniculata_contig13803:4395..4423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13803 4396..4423 +
1691480730.3482776-UTR-H-paniculata_contig13803:4395..44231691480730.3482776-UTR-H-paniculata_contig13803:4395..4423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13803 4396..4423 +
1622929097.7240806-UTR-H-paniculata_contig13803:4858..50621622929097.7240806-UTR-H-paniculata_contig13803:4858..5062Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13803 4859..5062 +
1691480730.3817315-UTR-H-paniculata_contig13803:4858..50621691480730.3817315-UTR-H-paniculata_contig13803:4858..5062Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13803 4859..5062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929097.6600971-CDS-H-paniculata_contig13803:4423..46041622929097.6600971-CDS-H-paniculata_contig13803:4423..4604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13803 4424..4604 +
1691480730.3572245-CDS-H-paniculata_contig13803:4423..46041691480730.3572245-CDS-H-paniculata_contig13803:4423..4604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13803 4424..4604 +
1622929097.678597-CDS-H-paniculata_contig13803:4654..47101622929097.678597-CDS-H-paniculata_contig13803:4654..4710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13803 4655..4710 +
1691480730.3648596-CDS-H-paniculata_contig13803:4654..47101691480730.3648596-CDS-H-paniculata_contig13803:4654..4710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13803 4655..4710 +
1622929097.7023034-CDS-H-paniculata_contig13803:4729..48581622929097.7023034-CDS-H-paniculata_contig13803:4729..4858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13803 4730..4858 +
1691480730.3733516-CDS-H-paniculata_contig13803:4729..48581691480730.3733516-CDS-H-paniculata_contig13803:4729..4858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13803 4730..4858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13803.2336.1

>prot_H-paniculata_contig13803.2336.1 ID=prot_H-paniculata_contig13803.2336.1|Name=mRNA_H-paniculata_contig13803.2336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MVGSLMYASTGPRPDIAYAIHQAARRMEDPCQEDSSTCKRIFRYLSTVPD
LGIPFGGKSNEPKVHNRIRFQAERWCNKLLVTWSSTEAEYDAAGEAGKET
VCLRELLGSIGFGCRGRATLF*
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mRNA from alignment at H-paniculata_contig13803:4133..5062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13803.2336.1 ID=mRNA_H-paniculata_contig13803.2336.1|Name=mRNA_H-paniculata_contig13803.2336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=930bp|location=Sequence derived from alignment at H-paniculata_contig13803:4133..5062+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTGTGCTCTCTCTCACGCGTGTTGGGAATAGAAGTACGACGTGACCG CCCTAATGGTATCATAACCATCTCGCAGGGTAGCAACATCCGCGAGGTAC TAAAAAGATACGGTTTTGACGAGTGTCGAGGAGTACCCACCCCTGTAGGG GGAAAAGTGAAGATTTCGGCATCCGAGTCGACCCACAAGCCCTCCGAACC GAAGTCACTTGGACCTGTACTGTCGGACATAGGCACAGGAGTAGAAGAAA ACAGCAAAGGGAGAAGTGGCAATTCAACTGAATACAGAGGCATGGTAGGA TCACTCATGTATGCCTCGACAGGACCTAGACCTGATATAGCATACGCGAT ACACCAAGCAGCACGTCGTATGGAGGACCCATGTCAAGAAGACTCCAGTA CATGCAAGCGCATTTTTCGTTACCTCAGTACTGTGCCTGACTTGGGCATT CCTTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGATGC CGATTGGGCAAAAGATGTCGAGAACCGAAAGTCCACAACAGGATACGTTT TCAAGCTGAAAGGTGGTGCAATAAGTTGGTGCTCTAGTAAGCAATAGTTA GTCACGTGGTCCAGTACAGAGGCAGAGTACGATGCTGCAGGAGAAGCAGG GAAGGAGACGGTATGTCTTAGGGAATTACTAGGATCGATAGGCTTCGGAT GCAGGGGGAGGGCGACATTGTTTTAGGACAATAAATCAGCTATCTATCTC AGTAAGGGATCTGGCGCACACTGCAGGACAAAGCACATCGGAGTGCGCTG GCACGGAATTCGAGAGTGGATTCGGAAAGGAATATTGGCATTGAAATACG TGCAGACCGGCGATCAACTTACTGACATATTAACGAAAGGACTAAGCAGA GTACAGTTTCAGAGACTGAGAAATTTACTC
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Coding sequence (CDS) from alignment at H-paniculata_contig13803:4133..5062+

>mRNA_H-paniculata_contig13803.2336.1 ID=mRNA_H-paniculata_contig13803.2336.1|Name=mRNA_H-paniculata_contig13803.2336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig13803:4133..5062+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGGATCACTCATGTATGCCTCGACAGGACCTAGACCTGATATAGC
ATACGCGATACACCAAGCAGCACGTCGTATGGAGGACCCATGTCAAGAAG
ACTCCAGTACATGCAAGCGCATTTTTCGTTACCTCAGTACTGTGCCTGAC
TTGGGCATTCCTTTCGGCGGTAAGAGTAATGATGGTAGGATCACTCATGT
ATGCCTCGACAGGACCTAGACCTGATATAGCATACGCGATACACCAAGCA
GCACGTCGTATGGAGGACCCATGTCAAGAAGACTCCAGTACATGCAAGCG
CATTTTTCGTTACCTCAGTACTGTGCCTGACTTGGGCATTCCTTTCGGCG
GTAAGAGTAATGAACCGAAAGTCCACAACAGGATACGTTTTCAAGCTGAA
AGGTGGTGCAATAAGTTGAACCGAAAGTCCACAACAGGATACGTTTTCAA
GCTGAAAGGTGGTGCAATAAGTTGTTAGTCACGTGGTCCAGTACAGAGGC
AGAGTACGATGCTGCAGGAGAAGCAGGGAAGGAGACGGTATGTCTTAGGG
AATTACTAGGATCGATAGGCTTCGGATGCAGGGGGAGGGCGACATTGTTT
TAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGATGCTGCAGGAGA
AGCAGGGAAGGAGACGGTATGTCTTAGGGAATTACTAGGATCGATAGGCT
TCGGATGCAGGGGGAGGGCGACATTGTTTTAG
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