prot_H-paniculata_contig1374.2301.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1374.2301.1
Unique Nameprot_H-paniculata_contig1374.2301.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length676
Homology
BLAST of mRNA_H-paniculata_contig1374.2301.1 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 4.360e-90
Identity = 177/280 (63.21%), Postives = 222/280 (79.29%), Query Frame = 0
Query:   29 AEAVPAFGDLSELLDSAGEVMASS-ERRGRANAAWAHVNEIRTMATQWMRRAKTCLRHDGAAAGVTLAVMKRHLSSGAAVPVDMPEYQELEKVASHWAAWEARALTCAATLESVPMEELASTTTIA-----GEN---DAEASKLLAEADAMTYGVKTNARDALSKALGRRGWAQRAGALVALGGVGTARPGVALPQALLSEAGKLGLLKSSEGGVS-LVERVRSLAEGTGTASRAREMLGSAVAEGGLGEDSPEEALAVAEGVLVAMRASPVAYPEEEKL 298
            A  +PAF ++S LLD+AGE MA+S +RRGRAN AW HVN+IR+MATQW+RRAKTCLR DGAAAGVTLAVM+RHLSSG AVPVDMPEY ELE+VA+ W AWE+RAL CAATLE+VP+E+LA T T+      GEN   D +AS LL EA A ++G+KT+A+DAL++ALGR+GWAQRA A+++   VG ARP VAL Q+L++EAGKLGLL+++ G VS LV +V++LAEG G A+RAR++L   V EGGL E S +  L  AEGVL  +RA+PV YPEEE +
Sbjct:  459 AAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTPPGENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTKVKALAEGEGPATRARDLL-KPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEESV 737          
BLAST of mRNA_H-paniculata_contig1374.2301.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.810e-7
Identity = 74/157 (47.13%), Postives = 89/157 (56.69%), Query Frame = 0
Query:  518 GDTLSTWSKAAVTAAAAIAGPSALXXITAGXXXXXXXXXXXXXARIVAQLVAAGLGALGWHSWRAHASRAASPASRSTIAAAAATTTSLAQAHILLDAASPSDTNANIANMNG-GGTG---LIALEGMALARAQASPELMALRVAVQSKDSAVSLAW 670
            GD LS WSK+  T      G       T  XXXXXXXXXX     +VAQ+VAAG+ +LGWHSWR  A+RAA  A   +  +  A  T LA  H LLDA         I+  NG GG+G   +  LEG ALA A AS E  ALR AV +KD+A ++AW
Sbjct:   46 GDNLSAWSKSGDTT-----GQEKKGMPTXXXXXXXXXXXXGSGRELVAQIVAAGVRSLGWHSWRVLAARAAFNALPGSNPSPPAKPT-LADGHALLDAV--------ISPGNGSGGSGAKPVAVLEGAALATAAASAEFAALREAVAAKDAAATMAW 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1374.2301.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKF5_ECTSI4.360e-9063.21PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LKF7_ECTSI7.810e-747.13TFIIS central domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1374contigH-paniculata_contig1374:6551..23723 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1374.2301.1mRNA_H-paniculata_contig1374.2301.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1374 6551..23723 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1374.2301.1 ID=prot_H-paniculata_contig1374.2301.1|Name=mRNA_H-paniculata_contig1374.2301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=676bp
RNSPGGRNSPGSGRNSPVGGRTSPVGTPAEAVPAFGDLSELLDSAGEVMA
SSERRGRANAAWAHVNEIRTMATQWMRRAKTCLRHDGAAAGVTLAVMKRH
LSSGAAVPVDMPEYQELEKVASHWAAWEARALTCAATLESVPMEELASTT
TIAGENDAEASKLLAEADAMTYGVKTNARDALSKALGRRGWAQRAGALVA
LGGVGTARPGVALPQALLSEAGKLGLLKSSEGGVSLVERVRSLAEGTGTA
SRAREMLGSAVAEGGLGEDSPEEALAVAEGVLVAMRASPVAYPEEEKLAL
RLRALRWSRAASTGLVGIMPHDRLVHLHKEVMSSEQLQGVVEGFKSCMPL
YTRVSKLNRWRERAQKLVKTVRDFISGAGGSGAPVVQGGSGGSNGNGLRE
RVEAYLLELESDIRVSGVPEALELSTFVREASAWEAEVQRVVCPLEEAYA
VSPPTPDELRLLADRGQRVLSPPQIVAALQWRAECASASSSSSCFSSGGT
FAGHNMDSNRVAELLATGDTLSTWSKAAVTAAAAIAGPSALPGITAGVGG
GGGGGGSGPGARIVAQLVAAGLGALGWHSWRAHASRAASPASRSTIAAAA
ATTTSLAQAHILLDAASPSDTNANIANMNGGGTGLIALEGMALARAQASP
ELMALRVAVQSKDSAVSLAWGARRGP
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