mRNA_H-paniculata_contig1374.2301.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig1374.2301.1 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI) HSP 1 Score: 305 bits (782), Expect = 4.360e-90 Identity = 177/280 (63.21%), Postives = 222/280 (79.29%), Query Frame = 1
Query: 85 AEAVPAFGDLSELLDSAGEVMASS-ERRGRANAAWAHVNEIRTMATQWMRRAKTCLRHDGAAAGVTLAVMKRHLSSGAAVPVDMPEYQELEKVASHWAAWEARALTCAATLESVPMEELASTTTIA-----GEN---DAEASKLLAEADAMTYGVKTNARDALSKALGRRGWAQRAGALVALGGVGTARPGVALPQALLSEAGKLGLLKSSEGGVS-LVERVRSLAEGTGTASRAREMLGSAVAEGGLGEDSPEEALAVAEGVLVAMRASPVAYPEEEKL 894
A +PAF ++S LLD+AGE MA+S +RRGRAN AW HVN+IR+MATQW+RRAKTCLR DGAAAGVTLAVM+RHLSSG AVPVDMPEY ELE+VA+ W AWE+RAL CAATLE+VP+E+LA T T+ GEN D +AS LL EA A ++G+KT+A+DAL++ALGR+GWAQRA A+++ VG ARP VAL Q+L++EAGKLGLL+++ G VS LV +V++LAEG G A+RAR++L V EGGL E S + L AEGVL +RA+PV YPEEE +
Sbjct: 459 AAGLPAFSEVSALLDNAGEAMATSADRRGRANTAWQHVNDIRSMATQWIRRAKTCLRADGAAAGVTLAVMRRHLSSGDAVPVDMPEYHELERVATEWEAWESRALRCAATLEAVPLEDLAGTLTVCSPTPPGENGKADEDASGLLQEAAAFSHGIKTSAKDALTRALGRKGWAQRAVAVISCEAVGIARPSVALTQSLMTEAGKLGLLRAAGGAVSPLVTKVKALAEGEGPATRARDLL-KPVEEGGLSEASSDAELCGAEGVLGNLRATPVVYPEEESV 737
BLAST of mRNA_H-paniculata_contig1374.2301.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 7.810e-7 Identity = 74/157 (47.13%), Postives = 89/157 (56.69%), Query Frame = 1
Query: 1552 GDTLSTWSKAAVTAAAAIAGPSALXXITAGXXXXXXXXXXXXXARIVAQLVAAGLGALGWHSWRAHASRAASPASRSTIAAAAATTTSLAQAHILLDAASPSDTNANIANMNG-GGTG---LIALEGMALARAQASPELMALRVAVQSKDSAVSLAW 2010
GD LS WSK+ T G T XXXXXXXXXX +VAQ+VAAG+ +LGWHSWR A+RAA A + + A T LA H LLDA I+ NG GG+G + LEG ALA A AS E ALR AV +KD+A ++AW
Sbjct: 46 GDNLSAWSKSGDTT-----GQEKKGMPTXXXXXXXXXXXXGSGRELVAQIVAAGVRSLGWHSWRVLAARAAFNALPGSNPSPPAKPT-LADGHALLDAV--------ISPGNGSGGSGAKPVAVLEGAALATAAASAEFAALREAVAAKDAAATMAW 188 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1374.2301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1374.2301.1 >prot_H-paniculata_contig1374.2301.1 ID=prot_H-paniculata_contig1374.2301.1|Name=mRNA_H-paniculata_contig1374.2301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=676bp RNSPGGRNSPGSGRNSPVGGRTSPVGTPAEAVPAFGDLSELLDSAGEVMAback to top mRNA from alignment at H-paniculata_contig1374:6551..23723+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1374.2301.1 ID=mRNA_H-paniculata_contig1374.2301.1|Name=mRNA_H-paniculata_contig1374.2301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17173bp|location=Sequence derived from alignment at H-paniculata_contig1374:6551..23723+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1374:6551..23723+ >mRNA_H-paniculata_contig1374.2301.1 ID=mRNA_H-paniculata_contig1374.2301.1|Name=mRNA_H-paniculata_contig1374.2301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4056bp|location=Sequence derived from alignment at H-paniculata_contig1374:6551..23723+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |