mRNA_H-paniculata_contig13720.2292.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13720.2292.1
Unique NamemRNA_H-paniculata_contig13720.2292.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13720.2292.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.750e-13
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 VRRLVASVVLANASDALLDERCFRQTLRVVSELWRGFRSHCKVELAVLLEGFLLRTLRAGSPQV 192
            +RRLV S+V+  +++ L+DER FR  L +V+ LW+ FR HCKVELAVL+E  +L+ LR G   V
Sbjct: 1402 IRRLVVSLVINISAEVLMDERIFRLVLELVTALWKRFRRHCKVELAVLMENLVLKLLREGGGAV 1465
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BLAST of mRNA_H-paniculata_contig13720.2292.1 vs. uniprot
Match: B7G9T2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9T2_PHATC)

HSP 1 Score: 61.2 bits (147), Expect = 2.350e-9
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 VRRLVASVVLANASDALLDERCFRQTLRVVSELWRG--FRSHCKVELAVLLEGFLLRTLRAGSPQVMY 198
            +RR+V   +L N   AL D + F++ +R+VSELW    +RSHCKVEL VL+E + +R L  G PQ ++
Sbjct: 1015 IRRMVVPCLLENTRHALEDPQIFQRVVRIVSELWSSPIYRSHCKVELGVLMEHYGVRILNLG-PQFLF 1081
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BLAST of mRNA_H-paniculata_contig13720.2292.1 vs. uniprot
Match: A0A7S2LRX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LRX7_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.460e-5
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 VRRLVASVVLANASDALLDERCFRQTLRVVSELWRG--FRSHCKVELAVLLEGFLLRTLRAGSPQV 192
            +RR+V   +L+N S ++ D R +++ LR+ S LW    +R   KV+LA+L+E F+L+ L  G PQ+
Sbjct:  245 IRRMVVPTMLSNTSASIEDCRVYQRVLRITSHLWCNSYYRRKMKVDLAILIEHFVLKILCLG-PQI 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13720.2292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZFI0_9STRA3.750e-1351.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7G9T2_PHATC2.350e-945.59Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2LRX7_9STRA1.460e-539.39Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13720contigH-paniculata_contig13720:5842..6039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog2850.Phatr49198
Preferred nameYEL1
KEGG koko:K12494,ko:K17362,ko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0001558,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0005933,GO:0005934,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0007163,GO:0008104,GO:0008150,GO:0008289,GO:0008360,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019220,GO:0019222,GO:0019899,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032012,GO:0032014,GO:0032153,GO:0032940,GO:0033036,GO:0033554,GO:0034613,GO:0034976,GO:0035091,GO:0040008,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045834,GO:0045937,GO:0046578,GO:0046579,GO:0046889,GO:0046890,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051056,GO:0051057,GO:0051128,GO:0051174,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051523,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0061171,GO:0061389,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0071071,GO:0071073,GO:0071702,GO:0071705,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:0099568,GO:0099738,GO:1901981,GO:1902531,GO:1902533,GO:1903725,GO:1903727
EggNOG free text desc.Sec7 domain
EggNOG OGs2XDH1@2836,COG5307@1,KOG0929@2759
COG Functional cat.U
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko04131
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929089.9750192-CDS-H-paniculata_contig13720:5841..60391622929089.9750192-CDS-H-paniculata_contig13720:5841..6039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13720 5842..6039 +
1691480727.4153998-CDS-H-paniculata_contig13720:5841..60391691480727.4153998-CDS-H-paniculata_contig13720:5841..6039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13720 5842..6039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13720.2292.1prot_H-paniculata_contig13720.2292.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13720 5842..6039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13720.2292.1

>prot_H-paniculata_contig13720.2292.1 ID=prot_H-paniculata_contig13720.2292.1|Name=mRNA_H-paniculata_contig13720.2292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
VRRLVASVVLANASDALLDERCFRQTLRVVSELWRGFRSHCKVELAVLLE
GFLLRTLRAGSPQVMY
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mRNA from alignment at H-paniculata_contig13720:5842..6039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13720.2292.1 ID=mRNA_H-paniculata_contig13720.2292.1|Name=mRNA_H-paniculata_contig13720.2292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig13720:5842..6039+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGCAGGCTGGTGGCGTCGGTAGTGCTGGCCAACGCTTCCGACGCGCT
CCTTGATGAACGCTGCTTCCGACAGACTTTGAGAGTGGTCTCGGAACTCT
GGCGAGGCTTCCGGAGTCACTGCAAGGTGGAGCTCGCAGTTCTTCTCGAG
GGGTTCCTCTTGAGGACGCTCCGAGCTGGATCGCCGCAGGTGATGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig13720:5842..6039+

>mRNA_H-paniculata_contig13720.2292.1 ID=mRNA_H-paniculata_contig13720.2292.1|Name=mRNA_H-paniculata_contig13720.2292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig13720:5842..6039+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGCAGGCTGGTGGCGTCGGTAGTGCTGGCCAACGCTTCCGACGCGCT
CCTTGATGAACGCTGCTTCCGACAGACTTTGAGAGTGGTCTCGGAACTCT
GGCGAGGCTTCCGGAGTCACTGCAAGGTGGAGCTCGCAGTTCTTCTCGAG
GGGTTCCTCTTGAGGACGCTCCGAGCTGGATCGCCGCAGGTGATGTACGT
TCGCAGGCTGGTGGCGTCGGTAGTGCTGGCCAACGCTTCCGACGCGCTCC
TTGATGAACGCTGCTTCCGACAGACTTTGAGAGTGGTCTCGGAACTCTGG
CGAGGCTTCCGGAGTCACTGCAAGGTGGAGCTCGCAGTTCTTCTCGAGGG
GTTCCTCTTGAGGACGCTCCGAGCTGGATCGCCGCAGGTGATGTAC
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