mRNA_H-paniculata_contig13695.2272.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13695.2272.1
Unique NamemRNA_H-paniculata_contig13695.2272.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13695.2272.1 vs. uniprot
Match: D8LNS7_ECTSI (Mitogen-activated protein kinase (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS7_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 3.710e-30
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 KLGVSGWTERWFVLEGKRVMYYNQRGDRHPRGTLELNAGSRLKKIPTKEHAFHVVSD 171
            K GVSGWTERWFVLEGKRVMYYNQ+GDRHPRGTLELNAGSRLKKI TKEHAFHVVSD
Sbjct:    7 KKGVSGWTERWFVLEGKRVMYYNQKGDRHPRGTLELNAGSRLKKIATKEHAFHVVSD 63
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BLAST of mRNA_H-paniculata_contig13695.2272.1 vs. uniprot
Match: A0A835Z2Y5_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.290e-10
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 KLGVSGWTERWFVLEGKRVMYYNQRGDRHPRGTLELNAGSRLKKIPTKEHAFHVVSD 171
            K G   W +RWF LE   V YY+++GD  PRG + LNA SR+  +PT+ HAF V+++
Sbjct:   17 KKGGVSWKKRWFTLEDHVVTYYSRQGDPKPRGRMVLNAESRVTNLPTRPHAFQVITN 73
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BLAST of mRNA_H-paniculata_contig13695.2272.1 vs. uniprot
Match: D8LNL4_ECTSI (Mitogen-activated protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNL4_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.030e-8
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 KLGVSGWTERWFVLEGKRVMYYNQRGDRHPRGTLELNAGSRLKKIPTKEHAFHVVSD 171
            K G   W  RWF+LE   + Y++++GD  PRG + L A SR+  +PT+ HAF V+++
Sbjct:   24 KKGGVQWKRRWFILEDHVITYFSKQGDLRPRGRMVLIAESRVTNLPTRVHAFQVITN 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13695.2272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNS7_ECTSI3.710e-3094.74Mitogen-activated protein kinase (Fragment) n=2 Ta... [more]
A0A835Z2Y5_9STRA1.290e-1047.37Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
D8LNL4_ECTSI1.030e-842.11Mitogen-activated protein kinase n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13695contigH-paniculata_contig13695:207..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.8142116-CDS-H-paniculata_contig13695:206..3771622929086.8142116-CDS-H-paniculata_contig13695:206..377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13695 207..377 +
1691480726.1116948-CDS-H-paniculata_contig13695:206..3771691480726.1116948-CDS-H-paniculata_contig13695:206..377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13695 207..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13695.2272.1prot_H-paniculata_contig13695.2272.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13695 207..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13695.2272.1

>prot_H-paniculata_contig13695.2272.1 ID=prot_H-paniculata_contig13695.2272.1|Name=mRNA_H-paniculata_contig13695.2272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
KLGVSGWTERWFVLEGKRVMYYNQRGDRHPRGTLELNAGSRLKKIPTKEH
AFHVVSD
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mRNA from alignment at H-paniculata_contig13695:207..377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13695.2272.1 ID=mRNA_H-paniculata_contig13695.2272.1|Name=mRNA_H-paniculata_contig13695.2272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig13695:207..377+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATTAGGCGTGTCGGGATGGACGGAGCGATGGTTTGTGTTGGAAGGCAA
ACGGGTGATGTACTACAACCAAAGGGGGGACAGGCATCCTCGGGGTACAC
TTGAACTAAACGCGGGGAGCAGGCTTAAGAAGATCCCCACCAAGGAGCAC
GCCTTCCACGTTGTTTCAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig13695:207..377+

>mRNA_H-paniculata_contig13695.2272.1 ID=mRNA_H-paniculata_contig13695.2272.1|Name=mRNA_H-paniculata_contig13695.2272.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig13695:207..377+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATTAGGCGTGTCGGGATGGACGGAGCGATGGTTTGTGTTGGAAGGCAA
ACGGGTGATGTACTACAACCAAAGGGGGGACAGGCATCCTCGGGGTACAC
TTGAACTAAACGCGGGGAGCAGGCTTAAGAAGATCCCCACCAAGGAGCAC
GCCTTCCACGTTGTTTCAGATAAATTAGGCGTGTCGGGATGGACGGAGCG
ATGGTTTGTGTTGGAAGGCAAACGGGTGATGTACTACAACCAAAGGGGGG
ACAGGCATCCTCGGGGTACACTTGAACTAAACGCGGGGAGCAGGCTTAAG
AAGATCCCCACCAAGGAGCACGCCTTCCACGTTGTTTCAGAT
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