mRNA_H-paniculata_contig13683.2269.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13683.2269.1
Unique NamemRNA_H-paniculata_contig13683.2269.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: A0A6H5K9I6_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I6_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 1.340e-95
Identity = 147/164 (89.63%), Postives = 156/164 (95.12%), Query Frame = 1 
Query:    1 RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDEREGRIKDRSKRQREAK 492
            +C EL+ETLLELGVDCTPLHSLLGQRRR AALGKFKSQQTKVL+STDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGT L LCP+V+EDDVLKLLN VAKASRVA+MRLMEQGFDERE  IK+R+ RQRE+K
Sbjct:   58 KCQELSETLLELGVDCTPLHSLLGQRRRTAALGKFKSQQTKVLISTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTPLGLCPEVEEDDVLKLLNQVAKASRVARMRLMEQGFDERETSIKERNSRQRESK 221
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: D7FU40_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU40_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 8.720e-91
Identity = 146/164 (89.02%), Postives = 156/164 (95.12%), Query Frame = 1 
Query:    1 RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDEREGRIKDRSKRQREAK 492
            +C EL+ETL+ELGVDCTPLHSLLGQRRR AALGKFKSQQTKVL+STDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGT L LCP+V+EDDVLKLLN VAKASRVA+MRLMEQGFDERE  IK+R+ RQRE+K
Sbjct:  403 KCQELSETLVELGVDCTPLHSLLGQRRRTAALGKFKSQQTKVLISTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTPLGLCPEVEEDDVLKLLNQVAKASRVARMRLMEQGFDERETSIKERNSRQRESK 566
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: A0A836CIA6_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIA6_9STRA)

HSP 1 Score: 238 bits (606), Expect = 6.260e-74
Identity = 118/163 (72.39%), Postives = 143/163 (87.73%), Query Frame = 1 
Query:    1 RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDEREGRIKDRSKRQREA 489
            RC E+ ETLL+L +DC  LHS++ Q+RR+AALGKFKS Q+++LVSTDV+SRGLDIP VDLV+NFD+PRVATDYVHRVGRTARAGRRGRA+SLV+QYD+ELVHNIE+YT T L LC +V E DVLKLLNP+ KA+RVA+MRLME GFDE+E + K RS R+R+A
Sbjct:  304 RCQEVCETLLQLRLDCVCLHSMMSQKRRLAALGKFKSSQSRILVSTDVSSRGLDIPEVDLVVNFDMPRVATDYVHRVGRTARAGRRGRALSLVTQYDVELVHNIEEYTSTKLDLCEEVIEKDVLKLLNPINKATRVARMRLMELGFDEKEQQRKSRSTRKRQA 466
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: A0A7S2ALE1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALE1_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.030e-63
Identity = 106/164 (64.63%), Postives = 133/164 (81.10%), Query Frame = 1 
Query:    1 RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDEREGRIKDRSKRQREAK 492
            RC E+   LLELG+DC  +HSLL QRRR AALGKFK+  TK+L++TDVASRGLDIP VDLVINFD+PR  +D+VHRVGRTAR GRRG A+SLV+Q+D+ELVH IE++TG  L+L   + +D+VL LLNPVAKA RVA+ +L+E GFDE+   +K R+ RQR+AK
Sbjct:  301 RCQEVTMVLLELGIDCVCIHSLLSQRRRTAALGKFKTHTTKILIATDVASRGLDIPEVDLVINFDLPRAPSDFVHRVGRTARRGRRGNAISLVTQHDVELVHAIEEFTGFKLSLRKGITDDNVLPLLNPVAKAMRVARQKLVEIGFDEKVQNLKARANRQRKAK 464
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: W7UCM8_9STRA (Atp-dependent rna helicase ddx49-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UCM8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.170e-58
Identity = 99/159 (62.26%), Postives = 126/159 (79.25%), Query Frame = 1 
Query:    1 RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDEREGRIKDRSKR 477
            RC E+AE LLE G+    LHS+L Q+RR+AALGKFKS   +VLVSTDVASRGLDIP V LV+N+D+PR++TDY+HRVGRTARAGR GRAVS+V+QYD+ L+  +E  TG  +  C +V E++V++LLNPVAKA+R A+MRLME GFDE+     +R KR
Sbjct:  344 RCQEVAEVLLEAGLTAVSLHSVLSQKRRLAALGKFKSSLVRVLVSTDVASRGLDIPDVGLVLNYDLPRLSTDYIHRVGRTARAGRYGRAVSMVTQYDVALLQGVEAVTGRKMPACEEVTEEEVVRLLNPVAKATRAARMRLMEVGFDEQVHEHLERKKR 502
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: A0A7S2Y019_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y019_9STRA)

HSP 1 Score: 187 bits (475), Expect = 2.520e-56
Identity = 99/158 (62.66%), Postives = 118/158 (74.68%), Query Frame = 1 
Query:    1 RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDEREGRIKDRSK 474
            +C EL E L E+GV    LHSLL Q RRMAAL KFKSQQ  VLVSTDVASRGLDIP+VDLVIN D+PR   DYVHRVGRTARAG+ G AVSLV+  ++ LV   E Y G  L  CP V + +VL+ LNPVAKA RVAK+RL++QGF+++   +K+R K
Sbjct:   89 KCQELCEVLTEVGVGAVALHSLLTQPRRMAALAKFKSQQVGVLVSTDVASRGLDIPSVDLVINHDLPRTPVDYVHRVGRTARAGKGGTAVSLVTPAEVGLVQAAEAYAGVKLEECPQVVQRNVLRRLNPVAKAQRVAKLRLLQQGFEDKVLAMKERKK 246
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: A0A7S1D8A5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8A5_CYCTE)

HSP 1 Score: 181 bits (460), Expect = 1.250e-55
Identity = 95/153 (62.09%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:   40 VDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDE-----REGRIKDRSKRQR 483
            V+   LHSLL Q RR+AALGKFKSQ  ++LV+TDVASRGLDIP+VDLVIN ++PR A  YVHRVGRTARAGRRGRAVSLV++ D+ LVH  E+ TG  L  C D+ +D  +KLL PV KASR+AKM+LM+ GFDE     +E +++DR +R+R
Sbjct:    1 VENVALHSLLSQNRRLAALGKFKSQHVRILVATDVASRGLDIPSVDLVINAELPRDAVSYVHRVGRTARAGRRGRAVSLVAETDVSLVHATEKLTGRPLEKCNDITDDMAIKLLGPVTKASRLAKMKLMDIGFDELVKKMKERKVRDRKERER 153
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: A0A7S2K3W1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3W1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.990e-53
Identity = 89/148 (60.14%), Postives = 112/148 (75.68%), Query Frame = 1 
Query:    1 RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDE 444
            R   +   L ELGVDC  LHS+L Q RR AALGKFKSQ  +VLV+TDVASRGLDIP VDLV+N ++PR A DY+HRVGRTARAGRRG AVSLV + D+ LVH  E+ +G +L  C  V + D L+++NPVAKA+R+ K+++ E GFD+
Sbjct:   73 RAARMEGMLFELGVDCVALHSILSQDRRRAALGKFKSQHVRVLVATDVASRGLDIPEVDLVLNAELPRKAADYIHRVGRTARAGRRGLAVSLVGEGDVALVHAAEKLSGRSLEKCDAVTDKDALRMMNPVAKATRLTKVKMAEVGFDD 220
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: A0A7S1Z4R2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z4R2_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.590e-52
Identity = 97/161 (60.25%), Postives = 120/161 (74.53%), Query Frame = 1 
Query:    1 RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDEREGRIKDRSKRQR 483
            R   ++  L ELGVD   LHSLL Q RR+AALGKFKSQQ +VLV+TDVASRGLDIP VDLV+N  +PR A DY+HRVGRTARAGRRGRAVSLV + D+ LVH  E+ +G  +  C DV +DD ++LL  V+KA+R+ KM+LM+ GFD+   R K+R  R R
Sbjct:  422 RSAHVSGILSELGVDNVSLHSLLSQNRRLAALGKFKSQQVRVLVATDVASRGLDIPTVDLVVNAQLPRRAVDYIHRVGRTARAGRRGRAVSLVCETDVSLVHAAEEMSGRKMDKCNDVTDDDAVRLLGSVSKAARLTKMKLMDIGFDDLVKRQKERKARDR 582
[Close]
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Match: K0SBG2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBG2_THAOC)

HSP 1 Score: 184 bits (466), Expect = 4.790e-52
Identity = 96/164 (58.54%), Postives = 122/164 (74.39%), Query Frame = 1 
Query:    1 RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDEREGRIKDRSKRQREAK 492
            RC  +A  L ELG+    LHSLL Q RR+A+LG F+SQ+ +V+V+TDVASRGLD+P VDLVIN ++PR   DYVHRVGRTARAGRRGRAVSLV + DI+LVH  E+ +G  L  C DV ++  ++LL PVAKASR+ KM+LM+ GFDE   R + R +R R A+
Sbjct:  430 RCAHIAGILTELGISNVALHSLLSQNRRLASLGMFQSQRVRVMVATDVASRGLDVPEVDLVINAELPRRDVDYVHRVGRTARAGRRGRAVSLVGEQDIDLVHQAERISGRKLEKCSDVTDNMAVRLLGPVAKASRLTKMKLMDIGFDELVERHRKRKRRDRRAR 593
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13683.2269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9I6_9PHAE1.340e-9589.63Helicase C-terminal domain-containing protein n=1 ... [more]
D7FU40_ECTSI8.720e-9189.02DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836CIA6_9STRA6.260e-7472.39DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2ALE1_9STRA1.030e-6364.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7UCM8_9STRA2.170e-5862.26Atp-dependent rna helicase ddx49-like protein n=2 ... [more]
A0A7S2Y019_9STRA2.520e-5662.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1D8A5_CYCTE1.250e-5562.09Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2K3W1_9STRA1.990e-5360.14Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S1Z4R2_9STRA3.590e-5260.25Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0SBG2_THAOC4.790e-5258.54Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13683contigH-paniculata_contig13683:532..2311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.2
Seed ortholog evalue9.7e-75
Seed eggNOG ortholog2880.D7FU40
Preferred nameDDX49
KEGG koko:K14778
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003743,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008026,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009553,GO:0009561,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0016070,GO:0016072,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0022613,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042254,GO:0042274,GO:0042623,GO:0042802,GO:0042995,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090406,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0120025,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0340@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-25_000740.1
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons4
Model size492
Cds size492
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13683.2269.1prot_H-paniculata_contig13683.2269.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13683 532..2311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.436543-CDS-H-paniculata_contig13683:531..6481622929086.436543-CDS-H-paniculata_contig13683:531..648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13683 532..648 +
1691480725.9700093-CDS-H-paniculata_contig13683:531..6481691480725.9700093-CDS-H-paniculata_contig13683:531..648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13683 532..648 +
1622929086.4654808-CDS-H-paniculata_contig13683:1429..15971622929086.4654808-CDS-H-paniculata_contig13683:1429..1597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13683 1430..1597 +
1691480725.9828548-CDS-H-paniculata_contig13683:1429..15971691480725.9828548-CDS-H-paniculata_contig13683:1429..1597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13683 1430..1597 +
1622929086.4811277-CDS-H-paniculata_contig13683:1732..18791622929086.4811277-CDS-H-paniculata_contig13683:1732..1879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13683 1733..1879 +
1691480725.992363-CDS-H-paniculata_contig13683:1732..18791691480725.992363-CDS-H-paniculata_contig13683:1732..1879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13683 1733..1879 +
1622929086.497847-CDS-H-paniculata_contig13683:2251..23111622929086.497847-CDS-H-paniculata_contig13683:2251..2311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13683 2252..2311 +
1691480726.0034497-CDS-H-paniculata_contig13683:2251..23111691480726.0034497-CDS-H-paniculata_contig13683:2251..2311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13683 2252..2311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13683.2269.1

>prot_H-paniculata_contig13683.2269.1 ID=prot_H-paniculata_contig13683.2269.1|Name=mRNA_H-paniculata_contig13683.2269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
RCHELAETLLELGVDCTPLHSLLGQRRRMAALGKFKSQQTKVLVSTDVAS
RGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIEL
VHNIEQYTGTALALCPDVKEDDVLKLLNPVAKASRVAKMRLMEQGFDERE
GRIKDRSKRQREAK
back to top

mRNA from alignment at H-paniculata_contig13683:532..2311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13683.2269.1 ID=mRNA_H-paniculata_contig13683.2269.1|Name=mRNA_H-paniculata_contig13683.2269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1780bp|location=Sequence derived from alignment at H-paniculata_contig13683:532..2311+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGTCATGAGTTGGCAGAGACTCTTCTGGAGCTCGGGGTCGACTGCAC
GCCCTTGCACTCCCTGCTTGGACAGCGCCGTCGAATGGCAGCTCTCGGAA
AATTCAAGTCACAGCAGGTAATAACTATCAAGTTACTTGCAACCTCAGGC
ACCCACCCTACGTTGACATCGTTGTGTAGGATTTATGGTTGACCAGCCGC
TTGCCATGCAGCGAGATTTACTTGCTGCCGTAGGCCTCAACAGTGACATG
TTATGGTGCCATTCTGGGAGTCTTTTCGTACACATAATATCAATTTGTTG
ACGCATAAAAATTGGAGTCAGCCGGTTAGGCACTTCAGCTGCAATTAATA
TCGCAAACTTGTAAGATCTACTGCTGGGGCAATCAGATACGTTAATCCAA
TTTTTGAAAGCGCCTATCGATGCCTCGAAAAGAAATAGTGAATTCTTCGC
GGTGTGATTTTTTTTTTCTAGAATTGTGCAGTTGACACGGTGCAGTAATT
GGTCGAGCGGCGTTGGCTGGGCAGCTCAATGGTGAACAGCTTTGTGTACG
GGAGTTAGTTGATAATACCTCCGCGTTGTGATTTTGTGCTGGGTGTGGTA
GAGGATGAGGGCTGAAGGTGCAGGTCAATGCTTTTGTAATTTGCCTTGTC
ATTTTCTCCAGCACTTGCCGAGCTCAGTCGGCCAGCGCTTTCCATTACTT
TATTTTGAATACGCATATATTTGTCAGAAACTGACGGACTGTTGCAGGGA
AAATTCGAACTATTACTAAAAGTATAGGGGTGACTGACGTCCACATTCCA
ACATACAACTCTTCCAAGCCGTAACCGTATCCACTAGGTGCACATCTCAG
CGCCCTTACCGTTGTCTCCCGCCCCATCCACGTCCCTCCAATTTTCAGAC
AAAGGTATTGGTGAGCACAGATGTGGCGAGCCGAGGATTGGATATTCCTG
CCGTAGACCTGGTGATAAACTTCGACGTTCCTAGGGTGGCAACCGACTAT
GTGCACCGTGTGGGACGAACGGCGCGTGCAGGTCGCCGGGGACGTGCGGT
ATCGCTCGTGTCTCAGGTACATATATACACGTAATATGACAGATTTGAAC
GATGGGCATCTAATACAACACGATGCCGTTCATTCGCCATTAATGCTGCT
TGCATTGTTGCGCCGGGCACCATTCCCATCCATCGGGGGCTTGATGTGCA
GTACGACATCGAACTGGTGCACAACATTGAGCAGTATACGGGAACGGCTC
TGGCACTGTGCCCGGATGTGAAAGAGGATGACGTGCTGAAGCTGCTCAAC
CCGGTTGCCAAGGCTTCAAGGGTGGCCAAGATGAGGCTCATGGAACAGGT
GTGTTGATGCCTATAAAGAGCTTCCATTTAGTTAGTCACGTTGTCTGCAC
AAAGGGAGATAAGCACCTCCTACAAACACCATTGGTGGGAAAGCTGGCTG
ACCGTCCGACGTGCACGTCTGCACTAATCAGATGTTGCGTGTGTGTAACT
GCGTGATGTTTTGAATACCAGGAGGTGGGTGTGCGGCGGTTTACGCCTCG
ATAGTATACTCGAAACTTGTCGGGAGAAAGAGCAATCACGATAAAATGCC
CGACTAAGGTATATACAAAAACTAAATGCATCATCACCCGAGCTATCTCA
ATTAACCGTTTCTATGTTTTCGTATGCTGCGCTGTGCGATATGTTGTACT
TTCCCCCGATGAATCCGAAGGGATTTGATGAGCGAGAGGGTAGAATTAAA
GACCGCAGCAAAAGACAGAGAGAGGCCAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13683:532..2311+

>mRNA_H-paniculata_contig13683.2269.1 ID=mRNA_H-paniculata_contig13683.2269.1|Name=mRNA_H-paniculata_contig13683.2269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig13683:532..2311+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGTCATGAGTTGGCAGAGACTCTTCTGGAGCTCGGGGTCGACTGCAC
GCCCTTGCACTCCCTGCTTGGACAGCGCCGTCGAATGGCAGCTCTCGGAA
AATTCAAGTCACAGCAGAGGTGTCATGAGTTGGCAGAGACTCTTCTGGAG
CTCGGGGTCGACTGCACGCCCTTGCACTCCCTGCTTGGACAGCGCCGTCG
AATGGCAGCTCTCGGAAAATTCAAGTCACAGCAGACAAAGGTATTGGTGA
GCACAGATGTGGCGAGCCGAGGATTGGATATTCCTGCCGTAGACCTGGTG
ATAAACTTCGACGTTCCTAGGGTGGCAACCGACTATGTGCACCGTGTGGG
ACGAACGGCGCGTGCAGGTCGCCGGGGACGTGCGGTATCGCTCGTGTCTC
AGACAAAGGTATTGGTGAGCACAGATGTGGCGAGCCGAGGATTGGATATT
CCTGCCGTAGACCTGGTGATAAACTTCGACGTTCCTAGGGTGGCAACCGA
CTATGTGCACCGTGTGGGACGAACGGCGCGTGCAGGTCGCCGGGGACGTG
CGGTATCGCTCGTGTCTCAGTACGACATCGAACTGGTGCACAACATTGAG
CAGTATACGGGAACGGCTCTGGCACTGTGCCCGGATGTGAAAGAGGATGA
CGTGCTGAAGCTGCTCAACCCGGTTGCCAAGGCTTCAAGGGTGGCCAAGA
TGAGGCTCATGGAACAGTACGACATCGAACTGGTGCACAACATTGAGCAG
TATACGGGAACGGCTCTGGCACTGTGCCCGGATGTGAAAGAGGATGACGT
GCTGAAGCTGCTCAACCCGGTTGCCAAGGCTTCAAGGGTGGCCAAGATGA
GGCTCATGGAACAGGGATTTGATGAGCGAGAGGGTAGAATTAAAGACCGC
AGCAAAAGACAGAGAGAGGCCAAGGGATTTGATGAGCGAGAGGGTAGAAT
TAAAGACCGCAGCAAAAGACAGAGAGAGGCCAAG
back to top