mRNA_H-paniculata_contig13670.2259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13670.2259.1
Unique NamemRNA_H-paniculata_contig13670.2259.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: A0A150G0E4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G0E4_GONPE)

HSP 1 Score: 57.4 bits (137), Expect = 5.680e-8
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKT-SRGSSGHLSH 153
            PGEMGDNL  VDLGT RTAV +  G +HTC +LD   VK   R ++G L +
Sbjct:   13 PGEMGDNLPFVDLGTGRTAVAMAAGAYHTCAILDTARVKCWGRAANGQLGY 63
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BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: A0A830HF57_9CHLO (U-box domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HF57_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 6.560e-8
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 EPGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKT-SRGSSGHLSH 153
            +PGE+GDNL  VDLGT RTA+ I  G  HTC VLDN  VK    G  G L +
Sbjct:  474 DPGEVGDNLPIVDLGTGRTAIQIALGSHHTCAVLDNGGVKCWGLGRQGQLGY 525
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BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: A0A6H5JPT1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 8.990e-8
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNE 111
            PG+MGDNL +VDLGT+RTAV +  G +HTCV+LDN+
Sbjct:  182 PGQMGDNLPEVDLGTNRTAVALETGWYHTCVILDNK 217
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BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: UPI001056704E (hypothetical protein n=1 Tax=Legionella yabuuchiae TaxID=376727 RepID=UPI001056704E)

HSP 1 Score: 56.6 bits (135), Expect = 1.200e-7
Identity = 29/50 (58.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 EPGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKT-SRGSSGHL 147
            EPGEMGDNL  VDLGT RTA  +T G    C +LDN+ VK   R +SG L
Sbjct:  332 EPGEMGDNLPAVDLGTGRTAKQLTAGGGFNCTLLDNDTVKCWGRNTSGQL 381
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BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: A0A835T094_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T094_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.240e-7
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVK 120
            PGEMGD L  V+LGT RTA  I+ G WHTC +LDN +VK
Sbjct: 1851 PGEMGDTLPAVELGTGRTATAISAGGWHTCALLDNGSVK 1889
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BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 3.100e-7
Identity = 29/51 (56.86%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKT-SRGSSGHLSH 153
            PGEMGDNL  VDLGT RTA  I+ G  HTC +LD+  VK    GS G L +
Sbjct:  213 PGEMGDNLPAVDLGTGRTATAISAGSSHTCALLDDGTVKCWGSGSFGRLGY 263
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BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: D7FKP6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP6_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 3.150e-7
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNE 111
            PG+MGDNL +VDLGT+RTAV +  G  HTCV+LDN+
Sbjct:  280 PGQMGDNLPEVDLGTNRTAVALETGWHHTCVILDNK 315
[Close]
BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: A0A7C1UEQ2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1UEQ2_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 4.210e-7
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 EPGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVK 120
            EPGEMGDNL  VDLGT RTA+ ++ G+  TC +LDN  VK
Sbjct:  339 EPGEMGDNLPPVDLGTGRTAIAVSTGQEFTCALLDNGTVK 378
[Close]
BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: A0A7C1YKS1_9ACTN (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YKS1_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 4.240e-7
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVK 120
            PGEMGDNL  +DLGT RTAV I  G  HTC +LD+ ++K
Sbjct:  204 PGEMGDNLPSIDLGTGRTAVAIAAGSHHTCAILDDGSLK 242
[Close]
BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Match: A0A150FY78_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FY78_GONPE)

HSP 1 Score: 52.8 bits (125), Expect = 4.950e-7
Identity = 24/39 (61.54%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    4 PGEMGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVK 120
            PGEMGDNL  VDLGT RT   +  G +HTC VLDN   K
Sbjct:    8 PGEMGDNLFYVDLGTGRTVAALAAGAYHTCAVLDNGKAK 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13670.2259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A150G0E4_GONPE5.680e-854.90Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A830HF57_9CHLO6.560e-855.77U-box domain-containing protein n=1 Tax=Pycnococcu... [more]
A0A6H5JPT1_9PHAE8.990e-866.67Protein kinase domain-containing protein n=1 Tax=E... [more]
UPI001056704E1.200e-758.00hypothetical protein n=1 Tax=Legionella yabuuchiae... [more]
A0A835T094_9CHLO1.240e-764.10Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A7C1YRK2_9ACTN3.100e-756.86Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
D7FKP6_ECTSI3.150e-766.67Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7C1UEQ2_9ACTN4.210e-762.50Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7C1YKS1_9ACTN4.240e-761.54Fibronectin type-III domain-containing protein (Fr... [more]
A0A150FY78_GONPE4.950e-761.54Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13670contigH-paniculata_contig13670:4184..4727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13670.2259.1prot_H-paniculata_contig13670.2259.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13670 4184..4715 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.772996-CDS-H-paniculata_contig13670:4183..42761622929084.772996-CDS-H-paniculata_contig13670:4183..4276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13670 4184..4276 -
1691480725.2707713-CDS-H-paniculata_contig13670:4183..42761691480725.2707713-CDS-H-paniculata_contig13670:4183..4276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13670 4184..4276 -
1622929084.791589-CDS-H-paniculata_contig13670:4607..47151622929084.791589-CDS-H-paniculata_contig13670:4607..4715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13670 4608..4715 -
1691480725.280439-CDS-H-paniculata_contig13670:4607..47151691480725.280439-CDS-H-paniculata_contig13670:4607..4715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13670 4608..4715 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.8128047-UTR-H-paniculata_contig13670:4715..47271622929084.8128047-UTR-H-paniculata_contig13670:4715..4727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13670 4716..4727 -
1691480725.2890148-UTR-H-paniculata_contig13670:4715..47271691480725.2890148-UTR-H-paniculata_contig13670:4715..4727Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13670 4716..4727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13670.2259.1

>prot_H-paniculata_contig13670.2259.1 ID=prot_H-paniculata_contig13670.2259.1|Name=mRNA_H-paniculata_contig13670.2259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MGDNLADVDLGTDRTAVHITCGRWHTCVVLDNEAVKTSRGSSGHLSHLLS
VCDIHASQRPSVFDAYS
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mRNA from alignment at H-paniculata_contig13670:4184..4727-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13670.2259.1 ID=mRNA_H-paniculata_contig13670.2259.1|Name=mRNA_H-paniculata_contig13670.2259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=544bp|location=Sequence derived from alignment at H-paniculata_contig13670:4184..4727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGGGGGAGATGGGAGATAACCTAGCCGACGTCGATCTAGGTACCGA
CAGAACGGCGGTTCATATTACATGTGGCAGGTGGCATACTTGCGTGGTTC
TGGACAACGAAGCCGTGAAGGTGTGCTTTTGGTTTTTTCTCTGGACCAAG
ATTCACAAACCGCGCGCCGAAGTAGGGCCGGGTGTTTGCGTCTGGGTCTG
GGTTTGTGTTGCCACATAGTTATAGGTGTATCTTCGTGTTCTCTTTCTGC
ATCTCAAACCTCATCACTCCATATTTCTGTCTCACTCCGTCTGTAGCTCT
GTCGCTCTGTCGCTCTGTCGTATCTCTCTGTCTCGCCGTATTTTCCTCGC
TGCCTCGCTGTCTTCTTCTCTATCTCGCTATCTCTATCTGTCTCGTTCCC
CCTCTCTATTTGTCTCTCTCGGTGCCATCATGAATATAATGCCGCTGTTA
GACCTCGCGTGGCTCCTCTGGGCATCTATCGCACCTACTGTCCGTGTGTG
ATATCCATGCTTCTCAACGCCCTTCTGTTTTTGATGCATACTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig13670:4184..4727-

>mRNA_H-paniculata_contig13670.2259.1 ID=mRNA_H-paniculata_contig13670.2259.1|Name=mRNA_H-paniculata_contig13670.2259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig13670:4184..4727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGATAACCTAGCCGACGTCGATCTAGGTACCGACAGAACGGCGGT
TCATATTACATGTGGCAGGTGGCATACTTGCGTGGTTCTGGACAACGAAG
CCGTGAAGATGGGAGATAACCTAGCCGACGTCGATCTAGGTACCGACAGA
ACGGCGGTTCATATTACATGTGGCAGGTGGCATACTTGCGTGGTTCTGGA
CAACGAAGCCGTGAAGACCTCGCGTGGCTCCTCTGGGCATCTATCGCACC
TACTGTCCGTGTGTGATATCCATGCTTCTCAACGCCCTTCTGTTTTTGAT
GCATACTCAACCTCGCGTGGCTCCTCTGGGCATCTATCGCACCTACTGTC
CGTGTGTGATATCCATGCTTCTCAACGCCCTTCTGTTTTTGATGCATACT
CA
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