mRNA_H-paniculata_contig13669.2256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13669.2256.1
Unique NamemRNA_H-paniculata_contig13669.2256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13669.2256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13669contigH-paniculata_contig13669:3628..5323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1678
Cds size1677
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.4616191-CDS-H-paniculata_contig13669:3628..43621622929084.4616191-CDS-H-paniculata_contig13669:3628..4362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13669 3629..4362 -
1691480725.1218126-CDS-H-paniculata_contig13669:3628..43621691480725.1218126-CDS-H-paniculata_contig13669:3628..4362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13669 3629..4362 -
1622929084.4819586-CDS-H-paniculata_contig13669:4380..53231622929084.4819586-CDS-H-paniculata_contig13669:4380..5323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13669 4381..5323 -
1691480725.1355846-CDS-H-paniculata_contig13669:4380..53231691480725.1355846-CDS-H-paniculata_contig13669:4380..5323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13669 4381..5323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13669.2256.1prot_H-paniculata_contig13669.2256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13669 3629..5323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13669.2256.1

>prot_H-paniculata_contig13669.2256.1 ID=prot_H-paniculata_contig13669.2256.1|Name=mRNA_H-paniculata_contig13669.2256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=559bp
QGSTSQGEGDSAPQIATATVRDSVGSEGEEGGKGETSDSDGDSGSVSTRL
DRSSPLPMTLLSASGSSSWPGHSLTSAADTVADASDRFSRLTPSVSSEIV
VEQQRATARIATTAAAAAAISPTPTGVNDVIVVGDRANRCLRRGSDMDGV
GLLVEPCAASLVVPTFGIGAAAAGTSGVDGGVRLLIAESKEEEQCIEEKV
PEPVDNNSEAEDCKSDRATVVLGAADDIDVDDYSGRLENCKGGEEGDGDV
TRQHQQQRQVGEGEGKCDESSREVGTGTTSASVVAINHSSSSRSSNSNSP
TGNDNSGEGSTTNQQKEEEEEEEEDNNNEDTEEAAWPLLQLPLSAWRRIT
ATTNVAATTAAAENRSESPSPSTVQASPDVPEEPQNQEHNRAELLPPPTG
LDGVTHPQQSVAKAETSVGASVLDGSAADCEVDPTGCGGGDGDAIANEEV
LRQDTARETAETNANGRADDGGGGDGRADEGSATETTFSAAAAAAVATSI
SADSRVAMAQLPAPDNTTAGTRSTTVSPSHAPAPAPTSSVSERPVSGTGV
EPAGTAAAA
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mRNA from alignment at H-paniculata_contig13669:3628..5323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13669.2256.1 ID=mRNA_H-paniculata_contig13669.2256.1|Name=mRNA_H-paniculata_contig13669.2256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1696bp|location=Sequence derived from alignment at H-paniculata_contig13669:3628..5323- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAAGCACTTCCCAAGGAGAAGGCGACAGTGCCCCACAAATAGCTAC
CGCGACTGTGAGGGATAGTGTCGGCAGCGAAGGGGAAGAAGGAGGGAAAG
GAGAGACGAGTGACAGCGACGGTGACAGCGGGAGCGTATCGACAAGATTA
GATCGGAGTTCTCCATTGCCGATGACACTGTTGTCAGCTTCAGGCTCTTC
GTCGTGGCCGGGGCATTCTCTCACCTCTGCTGCTGATACTGTTGCTGATG
CTTCGGATCGTTTTAGCCGGTTGACACCTAGTGTGTCCTCCGAAATTGTC
GTAGAACAGCAGCGAGCAACAGCAAGGATAGCGACAACAGCAGCAGCAGC
AGCAGCAATAAGTCCAACTCCGACGGGAGTCAACGACGTCATTGTCGTTG
GAGATAGGGCCAACCGTTGCCTGAGGCGCGGCAGCGACATGGATGGTGTT
GGTCTGCTCGTGGAACCCTGTGCTGCTTCTCTCGTGGTTCCAACTTTTGG
CATTGGTGCTGCTGCTGCTGGTACTAGTGGTGTTGACGGTGGTGTTCGAT
TATTGATCGCGGAGAGTAAGGAAGAGGAACAGTGTATAGAGGAGAAGGTT
CCCGAGCCGGTTGATAACAATAGCGAAGCGGAAGATTGCAAAAGTGACCG
TGCTACTGTTGTTCTTGGTGCTGCTGATGATATTGATGTTGACGATTATT
CTGGACGCCTTGAAAATTGCAAGGGTGGCGAAGAAGGCGACGGAGATGTG
ACAAGGCAGCACCAGCAGCAGCGACAGGTGGGAGAAGGGGAAGGGAAATG
CGACGAGAGCTCGCGTGAGGTTGGCACAGGAACAACAAGTGCATCAGTAG
TAGCGATCAACCACAGCAGCAGCAGTAGAAGCAGCAACAGCAATAGTCCC
ACTGGCAACGACAACTCAGGGGAAGGTAGCACTACCAACCAGCGCACAGA
CGAGAAGAAAGAAAAAGAGGAGGAGGAGGAAGAGGAGGAAGACAATAATA
ACGAAGATACTGAGGAAGCTGCTTGGCCGCTTCTGCAACTCCCTCTCTCT
GCGTGGCGACGAATCACTGCTACGACTAACGTCGCCGCAACCACTGCGGC
CGCGGAAAACCGATCTGAGTCGCCTTCGCCATCCACCGTGCAAGCCTCAC
CAGATGTGCCAGAAGAGCCACAAAATCAAGAACACAATCGAGCGGAGCTT
CTGCCACCGCCGACCGGCCTCGATGGAGTTACACACCCACAACAATCCGT
TGCAAAAGCAGAAACAAGCGTGGGCGCAAGTGTGTTGGATGGATCAGCGG
CTGATTGCGAGGTTGACCCCACAGGGTGCGGCGGCGGGGATGGCGACGCC
ATCGCTAACGAGGAAGTCTTGAGGCAGGACACAGCACGTGAGACAGCAGA
AACCAATGCCAACGGCCGCGCTGATGACGGTGGCGGCGGTGACGGCAGAG
CCGACGAAGGCTCGGCGACAGAGACAACATTCTCGGCTGCTGCTGCAGCA
GCAGTGGCAACCTCCATTTCCGCCGATTCACGCGTAGCGATGGCCCAACT
TCCCGCACCAGATAATACTACTGCCGGAACGAGAAGTACAACGGTCTCGC
CATCGCATGCACCGGCACCAGCGCCGACCTCTTCAGTTTCCGAAAGACCG
GTCTCCGGAACGGGCGTCGAACCGGCGGGAACAGCGGCAGCGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13669:3628..5323-

>mRNA_H-paniculata_contig13669.2256.1 ID=mRNA_H-paniculata_contig13669.2256.1|Name=mRNA_H-paniculata_contig13669.2256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3354bp|location=Sequence derived from alignment at H-paniculata_contig13669:3628..5323- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGAAGCACTTCCCAAGGAGAAGGCGACAGTGCCCCACAAATAGCTAC
CGCGACTGTGAGGGATAGTGTCGGCAGCGAAGGGGAAGAAGGAGGGAAAG
GAGAGACGAGTGACAGCGACGGTGACAGCGGGAGCGTATCGACAAGATTA
GATCGGAGTTCTCCATTGCCGATGACACTGTTGTCAGCTTCAGGCTCTTC
GTCGTGGCCGGGGCATTCTCTCACCTCTGCTGCTGATACTGTTGCTGATG
CTTCGGATCGTTTTAGCCGGTTGACACCTAGTGTGTCCTCCGAAATTGTC
GTAGAACAGCAGCGAGCAACAGCAAGGATAGCGACAACAGCAGCAGCAGC
AGCAGCAATAAGTCCAACTCCGACGGGAGTCAACGACGTCATTGTCGTTG
GAGATAGGGCCAACCGTTGCCTGAGGCGCGGCAGCGACATGGATGGTGTT
GGTCTGCTCGTGGAACCCTGTGCTGCTTCTCTCGTGGTTCCAACTTTTGG
CATTGGTGCTGCTGCTGCTGGTACTAGTGGTGTTGACGGTGGTGTTCGAT
TATTGATCGCGGAGAGTAAGGAAGAGGAACAGTGTATAGAGGAGAAGGTT
CCCGAGCCGGTTGATAACAATAGCGAAGCGGAAGATTGCAAAAGTGACCG
TGCTACTGTTGTTCTTGGTGCTGCTGATGATATTGATGTTGACGATTATT
CTGGACGCCTTGAAAATTGCAAGGGTGGCGAAGAAGGCGACGGAGATGTG
ACAAGGCAGCACCAGCAGCAGCGACAGGTGGGAGAAGGGGAAGGGAAATG
CGACGAGAGCTCGCGTGAGGTTGGCACAGGAACAACAAGTGCATCAGTAG
TAGCGATCAACCACAGCAGCAGCAGTAGAAGCAGCAACAGCAATAGTCCC
ACTGGCAACGACAACTCAGGGGAAGGTAGCACTACCAACCAGCCAGGGAA
GCACTTCCCAAGGAGAAGGCGACAGTGCCCCACAAATAGCTACCGCGACT
GTGAGGGATAGTGTCGGCAGCGAAGGGGAAGAAGGAGGGAAAGGAGAGAC
GAGTGACAGCGACGGTGACAGCGGGAGCGTATCGACAAGATTAGATCGGA
GTTCTCCATTGCCGATGACACTGTTGTCAGCTTCAGGCTCTTCGTCGTGG
CCGGGGCATTCTCTCACCTCTGCTGCTGATACTGTTGCTGATGCTTCGGA
TCGTTTTAGCCGGTTGACACCTAGTGTGTCCTCCGAAATTGTCGTAGAAC
AGCAGCGAGCAACAGCAAGGATAGCGACAACAGCAGCAGCAGCAGCAGCA
ATAAGTCCAACTCCGACGGGAGTCAACGACGTCATTGTCGTTGGAGATAG
GGCCAACCGTTGCCTGAGGCGCGGCAGCGACATGGATGGTGTTGGTCTGC
TCGTGGAACCCTGTGCTGCTTCTCTCGTGGTTCCAACTTTTGGCATTGGT
GCTGCTGCTGCTGGTACTAGTGGTGTTGACGGTGGTGTTCGATTATTGAT
CGCGGAGAGTAAGGAAGAGGAACAGTGTATAGAGGAGAAGGTTCCCGAGC
CGGTTGATAACAATAGCGAAGCGGAAGATTGCAAAAGTGACCGTGCTACT
GTTGTTCTTGGTGCTGCTGATGATATTGATGTTGACGATTATTCTGGACG
CCTTGAAAATTGCAAGGGTGGCGAAGAAGGCGACGGAGATGTGACAAGGC
AGCACCAGCAGCAGCGACAGGTGGGAGAAGGGGAAGGGAAATGCGACGAG
AGCTCGCGTGAGGTTGGCACAGGAACAACAAGTGCATCAGTAGTAGCGAT
CAACCACAGCAGCAGCAGTAGAAGCAGCAACAGCAATAGTCCCACTGGCA
ACGACAACTCAGGGGAAGGTAGCACTACCAACCAGCAAAAAGAGGAGGAG
GAGGAAGAGGAGGAAGACAATAATAACGAAGATACTGAGGAAGCTGCTTG
GCCGCTTCTGCAACTCCCTCTCTCTGCGTGGCGACGAATCACTGCTACGA
CTAACGTCGCCGCAACCACTGCGGCCGCGGAAAACCGATCTGAGTCGCCT
TCGCCATCCACCGTGCAAGCCTCACCAGATGTGCCAGAAGAGCCACAAAA
TCAAGAACACAATCGAGCGGAGCTTCTGCCACCGCCGACCGGCCTCGATG
GAGTTACACACCCACAACAATCCGTTGCAAAAGCAGAAACAAGCGTGGGC
GCAAGTGTGTTGGATGGATCAGCGGCTGATTGCGAGGTTGACCCCACAGG
GTGCGGCGGCGGGGATGGCGACGCCATCGCTAACGAGGAAGTCTTGAGGC
AGGACACAGCACGTGAGACAGCAGAAACCAATGCCAACGGCCGCGCTGAT
GACGGTGGCGGCGGTGACGGCAGAGCCGACGAAGGCTCGGCGACAGAGAC
AACATTCTCGGCTGCTGCTGCAGCAGCAGTGGCAACCTCCATTTCCGCCG
ATTCACGCGTAGCGATGGCCCAACTTCCCGCACCAGATAATACTACTGCC
GGAACGAGAAGTACAACGGTCTCGCCATCGCATGCACCGGCACCAGCGCC
GACCTCTTCAGTTTCCGAAAGACCGGTCTCCGGAACGGGCGTCGAACCGG
CGGGAACAGCGGCAGCGGCGAAAAAGAGGAGGAGGAGGAAGAGGAGGAAG
ACAATAATAACGAAGATACTGAGGAAGCTGCTTGGCCGCTTCTGCAACTC
CCTCTCTCTGCGTGGCGACGAATCACTGCTACGACTAACGTCGCCGCAAC
CACTGCGGCCGCGGAAAACCGATCTGAGTCGCCTTCGCCATCCACCGTGC
AAGCCTCACCAGATGTGCCAGAAGAGCCACAAAATCAAGAACACAATCGA
GCGGAGCTTCTGCCACCGCCGACCGGCCTCGATGGAGTTACACACCCACA
ACAATCCGTTGCAAAAGCAGAAACAAGCGTGGGCGCAAGTGTGTTGGATG
GATCAGCGGCTGATTGCGAGGTTGACCCCACAGGGTGCGGCGGCGGGGAT
GGCGACGCCATCGCTAACGAGGAAGTCTTGAGGCAGGACACAGCACGTGA
GACAGCAGAAACCAATGCCAACGGCCGCGCTGATGACGGTGGCGGCGGTG
ACGGCAGAGCCGACGAAGGCTCGGCGACAGAGACAACATTCTCGGCTGCT
GCTGCAGCAGCAGTGGCAACCTCCATTTCCGCCGATTCACGCGTAGCGAT
GGCCCAACTTCCCGCACCAGATAATACTACTGCCGGAACGAGAAGTACAA
CGGTCTCGCCATCGCATGCACCGGCACCAGCGCCGACCTCTTCAGTTTCC
GAAAGACCGGTCTCCGGAACGGGCGTCGAACCGGCGGGAACAGCGGCAGC
GGCG
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