mRNA_H-paniculata_contig13616.2233.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13616.2233.1
Unique NamemRNA_H-paniculata_contig13616.2233.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13616.2233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13616contigH-paniculata_contig13616:1292..2670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1379
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13616.2233.1prot_H-paniculata_contig13616.2233.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13616 1344..2078 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.0985942-UTR-H-paniculata_contig13616:1291..13431622929078.0985942-UTR-H-paniculata_contig13616:1291..1343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13616 1292..1343 +
1691480723.657134-UTR-H-paniculata_contig13616:1291..13431691480723.657134-UTR-H-paniculata_contig13616:1291..1343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13616 1292..1343 +
1622929078.1255767-UTR-H-paniculata_contig13616:2078..26701622929078.1255767-UTR-H-paniculata_contig13616:2078..2670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13616 2079..2670 +
1691480723.6757786-UTR-H-paniculata_contig13616:2078..26701691480723.6757786-UTR-H-paniculata_contig13616:2078..2670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13616 2079..2670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.1121628-CDS-H-paniculata_contig13616:1343..20781622929078.1121628-CDS-H-paniculata_contig13616:1343..2078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13616 1344..2078 +
1691480723.66627-CDS-H-paniculata_contig13616:1343..20781691480723.66627-CDS-H-paniculata_contig13616:1343..2078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13616 1344..2078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13616.2233.1

>prot_H-paniculata_contig13616.2233.1 ID=prot_H-paniculata_contig13616.2233.1|Name=mRNA_H-paniculata_contig13616.2233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp
MSISAHLGLGTRERCGVTTVAQSCIGFVCPLLKGALPARVQDRELFLHVR
GSHLRDAGEHVLVSRVHAETGGDTPPLRRRKARGSRTWRMRHLADPGRLK
MWDQEVRCRTTAAMVAHILVKCGVRHQRPIVRVRRGVPLPDLMSVATSKA
PRGPVLTLGQSRYPGKVSKTRAAATAAGVGNLGGSSSWKARHGLGSVLPA
ARAIAIRERADMCTSPLPWRHGSRTATCSTFRSRSCASPSRPRS*
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mRNA from alignment at H-paniculata_contig13616:1292..2670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13616.2233.1 ID=mRNA_H-paniculata_contig13616.2233.1|Name=mRNA_H-paniculata_contig13616.2233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1379bp|location=Sequence derived from alignment at H-paniculata_contig13616:1292..2670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCTCTCCCGCCCGTGCCGGCGTCGGCCTCGATCCCCCCGTCTCCGTCG
CCATGTCTATTTCTGCCCACCTGGGATTGGGCACCCGGGAACGGTGTGGG
GTAACCACCGTTGCCCAAAGCTGCATTGGCTTCGTGTGCCCACTGCTCAA
GGGTGCGCTCCCAGCCCGGGTGCAAGACCGCGAGCTATTCTTGCACGTGA
GGGGCTCCCATTTGCGAGACGCGGGAGAACATGTACTGGTATCGCGTGTA
CATGCTGAAACAGGGGGCGATACGCCGCCACTACGTCGTCGCAAGGCTAG
GGGCAGTAGAACCTGGCGTATGCGTCACCTGGCTGACCCAGGACGTCTCA
AAATGTGGGACCAGGAGGTACGATGTCGTACAACAGCGGCCATGGTGGCA
CACATATTGGTCAAATGTGGTGTGCGGCATCAGCGGCCGATTGTACGAGT
CCGCAGGGGGGTGCCACTTCCCGACCTCATGAGTGTGGCGACATCGAAGG
CCCCGCGAGGACCTGTGCTGACCCTTGGCCAGTCGAGGTACCCAGGGAAA
GTTTCGAAGACCAGAGCGGCCGCCACTGCCGCCGGGGTCGGTAATCTGGG
CGGCAGTTCTTCTTGGAAGGCTAGGCACGGCCTAGGGTCAGTTCTCCCGG
CCGCCAGGGCGATCGCCATACGGGAGAGGGCCGATATGTGCACCAGCCCG
CTTCCATGGCGGCACGGTAGCCGCACCGCGACTTGCTCAACATTCAGGAG
CCGTTCCTGCGCGTCGCCGTCTCGTCCCCGGTCATAGATTAAGGATATCC
CGCAGTACAGGCAGCTCTCGTCGGGGTTATCTTGTTCCCATTCCTCCCTG
TGGCTGTTCCAATCAAAGGGGCCGTCATAGTGCGGCAGAGGCCCGTCCGT
CCTTGCACTCACCCGTGTCTACGCCGCCCTAACCCGTTGCCGCTGTGGTA
CGTTCGTAATTCTCGCCTGCAGGTACGCTAGCAGCCCGAAGATAGATCCG
CGCTGTCCCAGATCACGCATCACCCCTGCACCTCACACGTCGGCACGGTC
GTCCTCTCCCCCATCCGCTACCCTGGCCGCGTCTTCCTCCGCTTCCTTCA
CAGCCCACTCAGGGTGAGCAAACCCTCTCCGGTATTCGACCCATTTGTTG
GGCTGCACGCCTCGATGGTAGGCCTGGCGCGTCGCTTCGCCCAACTCCAC
CCCATCCCGGGGCGCGCTCACCAAGGGGGGTGCTGGACCCAGCCGCTGCG
CGCACCTGCGGTGGAGGGAGTATTGCCGTTACGGAGTTGCGTCGCTAATC
GCCACCGGCGTTTCGCACATGGCGCACTTCGCCGTTTCATCCATCTCTAA
GCCCATCGCTTGGTTAGTGGTGCTCCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig13616:1292..2670+

>mRNA_H-paniculata_contig13616.2233.1 ID=mRNA_H-paniculata_contig13616.2233.1|Name=mRNA_H-paniculata_contig13616.2233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at H-paniculata_contig13616:1292..2670+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTATTTCTGCCCACCTGGGATTGGGCACCCGGGAACGGTGTGGGGT
AACCACCGTTGCCCAAAGCTGCATTGGCTTCGTGTGCCCACTGCTCAAGG
GTGCGCTCCCAGCCCGGGTGCAAGACCGCGAGCTATTCTTGCACGTGAGG
GGCTCCCATTTGCGAGACGCGGGAGAACATGTACTGGTATCGCGTGTACA
TGCTGAAACAGGGGGCGATACGCCGCCACTACGTCGTCGCAAGGCTAGGG
GCAGTAGAACCTGGCGTATGCGTCACCTGGCTGACCCAGGACGTCTCAAA
ATGTGGGACCAGGAGGTACGATGTCGTACAACAGCGGCCATGGTGGCACA
CATATTGGTCAAATGTGGTGTGCGGCATCAGCGGCCGATTGTACGAGTCC
GCAGGGGGGTGCCACTTCCCGACCTCATGAGTGTGGCGACATCGAAGGCC
CCGCGAGGACCTGTGCTGACCCTTGGCCAGTCGAGGTACCCAGGGAAAGT
TTCGAAGACCAGAGCGGCCGCCACTGCCGCCGGGGTCGGTAATCTGGGCG
GCAGTTCTTCTTGGAAGGCTAGGCACGGCCTAGGGTCAGTTCTCCCGGCC
GCCAGGGCGATCGCCATACGGGAGAGGGCCGATATGTGCACCAGCCCGCT
TCCATGGCGGCACGGTAGCCGCACCGCGACTTGCTCAACATTCAGGAGCC
GTTCCTGCGCGTCGCCGTCTCGTCCCCGGTCATAGATGTCTATTTCTGCC
CACCTGGGATTGGGCACCCGGGAACGGTGTGGGGTAACCACCGTTGCCCA
AAGCTGCATTGGCTTCGTGTGCCCACTGCTCAAGGGTGCGCTCCCAGCCC
GGGTGCAAGACCGCGAGCTATTCTTGCACGTGAGGGGCTCCCATTTGCGA
GACGCGGGAGAACATGTACTGGTATCGCGTGTACATGCTGAAACAGGGGG
CGATACGCCGCCACTACGTCGTCGCAAGGCTAGGGGCAGTAGAACCTGGC
GTATGCGTCACCTGGCTGACCCAGGACGTCTCAAAATGTGGGACCAGGAG
GTACGATGTCGTACAACAGCGGCCATGGTGGCACACATATTGGTCAAATG
TGGTGTGCGGCATCAGCGGCCGATTGTACGAGTCCGCAGGGGGGTGCCAC
TTCCCGACCTCATGAGTGTGGCGACATCGAAGGCCCCGCGAGGACCTGTG
CTGACCCTTGGCCAGTCGAGGTACCCAGGGAAAGTTTCGAAGACCAGAGC
GGCCGCCACTGCCGCCGGGGTCGGTAATCTGGGCGGCAGTTCTTCTTGGA
AGGCTAGGCACGGCCTAGGGTCAGTTCTCCCGGCCGCCAGGGCGATCGCC
ATACGGGAGAGGGCCGATATGTGCACCAGCCCGCTTCCATGGCGGCACGG
TAGCCGCACCGCGACTTGCTCAACATTCAGGAGCCGTTCCTGCGCGTCGC
CGTCTCGTCCCCGGTCATAG
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