mRNA_H-paniculata_contig13586.2214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13586.2214.1
Unique NamemRNA_H-paniculata_contig13586.2214.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13586.2214.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 8.090e-27
Identity = 66/157 (42.04%), Postives = 90/157 (57.32%), Query Frame = 3 
Query:  180 EIEHLEQTKSDKTSGTVVLGAFVTGSLVGIIVCAPAFVVVVFAVGVVGLYLHDGKVKEFARKVGGFGEKVILAVVKKTRELNDRFHIADKAKNLAKDTRSRIQKADEKCGFSKNVKARASSLWSHIDEKIR---LRRILGEQRPPTSTVTDGT*LPF 641
            E  H E    D+ SG +V G+F+ G+LVG+++CAPAFVV++F  G   L   D KV +F+RKVG     ++LAV +  RE N +  + DKAK  AK+   ++     K G   NVKARASSLW  +D++        I   Q    S VTDGT +PF
Sbjct:   38 EQPHQEVIAHDEASGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPF 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13586.2214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTP8_ECTSI8.090e-2742.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13586contigH-paniculata_contig13586:2060..6092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons5
Model size1593
Cds size567
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.7595766-UTR-H-paniculata_contig13586:2059..30201622929074.7595766-UTR-H-paniculata_contig13586:2059..3020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13586 2060..3020 -
1691480722.0637174-UTR-H-paniculata_contig13586:2059..30201691480722.0637174-UTR-H-paniculata_contig13586:2059..3020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13586 2060..3020 -
1622929074.8430355-UTR-H-paniculata_contig13586:6027..60921622929074.8430355-UTR-H-paniculata_contig13586:6027..6092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13586 6028..6092 -
1691480722.143078-UTR-H-paniculata_contig13586:6027..60921691480722.143078-UTR-H-paniculata_contig13586:6027..6092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13586 6028..6092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.7756991-CDS-H-paniculata_contig13586:3020..30891622929074.7756991-CDS-H-paniculata_contig13586:3020..3089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 3021..3089 -
1691480722.0746744-CDS-H-paniculata_contig13586:3020..30891691480722.0746744-CDS-H-paniculata_contig13586:3020..3089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 3021..3089 -
1622929074.7889159-CDS-H-paniculata_contig13586:3783..38971622929074.7889159-CDS-H-paniculata_contig13586:3783..3897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 3784..3897 -
1691480722.0914874-CDS-H-paniculata_contig13586:3783..38971691480722.0914874-CDS-H-paniculata_contig13586:3783..3897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 3784..3897 -
1622929074.8043308-CDS-H-paniculata_contig13586:4473..45781622929074.8043308-CDS-H-paniculata_contig13586:4473..4578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 4474..4578 -
1691480722.101051-CDS-H-paniculata_contig13586:4473..45781691480722.101051-CDS-H-paniculata_contig13586:4473..4578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 4474..4578 -
1622929074.8169034-CDS-H-paniculata_contig13586:5285..54911622929074.8169034-CDS-H-paniculata_contig13586:5285..5491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 5286..5491 -
1691480722.1223912-CDS-H-paniculata_contig13586:5285..54911691480722.1223912-CDS-H-paniculata_contig13586:5285..5491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 5286..5491 -
1622929074.8298569-CDS-H-paniculata_contig13586:5954..60271622929074.8298569-CDS-H-paniculata_contig13586:5954..6027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 5955..6027 -
1691480722.1336753-CDS-H-paniculata_contig13586:5954..60271691480722.1336753-CDS-H-paniculata_contig13586:5954..6027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13586 5955..6027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13586.2214.1prot_H-paniculata_contig13586.2214.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13586 3021..6027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13586.2214.1

>prot_H-paniculata_contig13586.2214.1 ID=prot_H-paniculata_contig13586.2214.1|Name=mRNA_H-paniculata_contig13586.2214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp
MYIAKEASTSAGSTYQDIVKAVSFDDLALRSEAQPLNIEIEHLEQTKSDK
TSGTVVLGAFVTGSLVGIIVCAPAFVVVVFAVGVVGLYLHDGKVKEFARK
VGGFGEKVILAVVKKTRELNDRFHIADKAKNLAKDTRSRIQKADEKCGFS
KNVKARASSLWSHIDEKIRLRRILGEQRPPTSTVTDGT*
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mRNA from alignment at H-paniculata_contig13586:2060..6092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13586.2214.1 ID=mRNA_H-paniculata_contig13586.2214.1|Name=mRNA_H-paniculata_contig13586.2214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4033bp|location=Sequence derived from alignment at H-paniculata_contig13586:2060..6092- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTCTCCATCCTTCCATCGTATACGCAGTACTCTGGGAATAGGACTTCC
AATCTCTTCTGGGAAATGTACATTGCAAAGGAAGCTTCAACTTCTGCAGG
CAGCACCTATCAAGATATAGTCAAAGCCGTCTCTTTCGGTGAGGCGTGGG
TGTGTCTGCAATCAGCAAGCCTCGCATGCTCGCCCGATACATACAGGCGA
CGTGGACAGTTTAGATGGGCCTAGGTTATCGAAAAGGAACCGTTCTCAAG
CTTTTCGATACTAAAGATGTAGAGCCTACTCTACCACCGTTGAGTTGACG
TGAATTGAATTATGCTGCCCGCATCAACTAATATTACAGTTTATCGTCAA
TGGCTTTACAGTGACATCTAGCTGGTACGAGTATTTAGCCGGCAGCACCA
TCGTGGCCAGATTCGGTATAGTGCAGCACCGATCGTAACCGTTGGTAGCG
CATACAAGTGGTCGGTATTGTTACATGTTCGCGCGCGTGAGAAGAGAGTC
TGTAGACGGAGAAGGATGCAGAAAAATGAGTACGGTACGTTAATGCGGTT
GATGATTGCTGAGCTGCCTTTTCTCCTCTATCTCGGTCACGTTGGCCGCA
GACGACCTGGCGCTGAGGAGCGAGGCGCAGCCCCTTAATATTGAGATAGA
ACACCTAGAACAGACCAAATCCGACAAGACCAGCGGCACAGTCGTTCTCG
GTGCCTTCGTAACCGGCTCTCTCGTGGGGATCATCGTCTGCGCGCCAGCT
TTCGTCGTCGTAGTTTTCGCTGTGGGCGTCGTGGGACTGTATCTTCATGA
CGGGAAGGTAGGATTGGAGCCTTTAGTTGGTCGTTTTCGGAGTCCTCAAC
TTGGGTGCACACGGTCAAATAGTGGTGGTCGGGTGCACTGTGTAGATGCA
CAACACGCAAGCTCTTCGTAGGTTCAAGATATGAAAACATGATTATCTTG
GCTGTAGGGTATATCACACGCATATCAGTACGAGACAGGTCTGACACCTG
CACTGTTAAAACGCGATAAATTGTTCGATACGCTGAGAGCTGGAATTTAA
GAATTAAGAACGGGGAGCGGATCGCTCGCGAGCCTCGACTCGACAAGAAT
TCTCTCCCTATGCTAAATTACACACCCCGAATATGTAGTTTCATCGTTGT
ATGTCTGATGTTTTAAAACGACCAGAGTAATCGGCGTTTCAGCACTACGA
TATTAGGGTACAACCAGTTGCAAACGGTCAGCATGGTAGCTGGCTTTCCA
ACACAGGGAAGGAAGTATAGACTTCGTGTCATATTGAAGAGCTGTTTTTC
TGTTGCGCATCCTGCAGTACACAATTATCTAACAATGTTAACTGTGGAGG
CCGCACGTCAAGTATTAAATTGATCCGACTTGAGAAAGAGGCATGCGTCA
AAACGGCCATTCTTCAAACGTTATCGACCGCGAGCCAGAGACAACAGTGC
CAATGTCAACAACGACCGCATTATACTGTTCCTGAGAATATATCTCGCGG
ATTCCAAACACTAGGTGAAAGAATTTGCGCGGAAAGTCGGAGGCTTCGGG
GAAAAAGTGATCTTGGCTGTGGTGAAGAAAACCCGCGAACTCAACGATCG
TTTTCACATCGCGGATAAGGTACGGGGCACCACGAGCGATGCATAGATAC
GTGTACCTCAAAAATACAGATATAAGATGTGTGACTACGAGACTTTTATG
GCCGACCAGTTCGACCACCAGGGGTATTGTGATGTGTGTCGCGTGCGTAG
TGCCTATCTCGCGGGGGGGGGGTGCCTGTGTGTACAGCTAATTGGTCCGA
AGCGCATACGCGTGCTCTTCTGGGTCTATCTCATCTGCCTGTGAACCTTC
TTCAACGCTAAGCTCCCGTTCGTCGCGGCTCTGTGTTGCTAAGCTGTGAG
TAATTAGGGTTTCTGCAGCGAGTTGCCGATTTACTTGTTTTGCTTAGCCG
ATGACGGCAACCGCCCATGGTGTCCTTCAACGACATAAAAATTAGAAGCA
TATATCCTCTGCATCGATTGATTGATTCGATGGTATCGATCGGTGCCGAT
ACACAACCAGCCCTAATAATTTCCATCACTGGCGTTGTTCCCTCAATGCA
CTCACTTCTAATAGCCGTGTCTGTGTCAGTGCTCGATTCGAATGCGTGTA
CCAAACATTTCGATGTTGTCCTCTATCGTTCTTGTTGCCATGAAGGCGAA
GAACCTTGCCAAGGACACGAGGTCACGGATTCAGAAGGCGGACGAGAAGT
GCGGGTTCAGCAAGAACGTAAAGGCGAGAGCTTCGTCCTTGTGGTCACAC
ATCGATGAGGTACGTATGATTATGTTCTACGACTGCGTTTTTCTGTGGTG
CAACGTATTTCAAGCGGGCGTTTGAACTCTACTAGTAGAGTGGGGGAGTT
ACGTTTAGAACGTTGCTACGATGTTGACCATGTTTGACTGATTCAAATGT
TGTTGCGTTTTGGGGGGATTGGTCGTTCGACAGCAGGCGTGGAGATGTAT
GTGTTTTCTAGTGGATGGCGTGATGTTATGCTCACGACAGCCAACTTGTA
GTTTAACAAGTCCAGTCCCGCAAAAATATGAACCTCGTTTTTGCCACAAT
CCAACAGTATAGTTTTAGTCCATATATATGCAACAGAGGTCCATTGAGCC
GCGTGTACCGTGGGCAGGTTCATGGCGCTGTGTGTTGGGTTTTCACGAGT
GGGAGCGACACCACTTGTACTTTAAAGCCGAGCCTTCTTCTCAGCACCTG
TGATCAACAACGGGGAAATACTTGAGTATCGCATGCCATAGCTTCCCGAA
ATAACAAAATCAATCCCCACGTTGGTACGTGACAACAAAGTCAACTGATT
GAGGTATCGGCGTAAGCCAGATTCCGGGGGTTACGAACTCCGGTCTATTT
CCTTCCTTGAGCTGTGCACTTGTCAGGAAAGTGATGAAGTGCCTTTATCT
CCGTGAAAAACACCGTCTTGAACGTGCTCTTTTCTGCCAAACGCGTAACA
CAGAAAATAAGACTGCGACGGATCTTGGGGGAGCAGCGTCCGCCGACGAG
TACTGTCACCGATGGGACCTAGCTTCCCTTCGGGCAGCAGATACAGCAAA
CCGACATCTGATAACTGGTCGTTGATATAGTCGAGAAGGGGCCGCGCAGA
TAGAGGTTGATGCGTAAAGAAGCCCATTCCCACCTGATGTTCATGTCGTG
ATGTGGTGGTACGGTACGGTAGACTTGGCTTTCCAGGCAGAAGAGAAGGG
CTCACGAGGGACGAGCCGACTATCTCGCCGAATTCAAGCCCTCTAATGGT
GTCGCTTAATTCAATCCATGGAAATTGGTACATGTTGTGTTCGATTGAGT
AAGAAGCGGATATCGACGTTGAGTTGCCTGTTGCCAGGTTTTTCTAACAT
CACCAGAATCTTTCATGTACAATATCAAACGAACTACCAGTTTTTTCAAC
GCACATGGTGTAAATTCGAGGGGAAAAGTGTGTCGTTCTCTAAGTCGTAT
TTTGTTGTTTGGTTGTGTCTAGTGAGCGTTTGTTTCTGATTATTTATTCT
TGGTTTTTGGTTGGTTAATGGCGAGGACAAATATCATACTTTTCCCGATA
TAATTACCGAAGCTCGAAGGTTGGCTGCGTTAACTTCTTGTTTACCAAAG
GGTGTTCGCACCCGCGACTCCGGCAAGCCAGAGCGCCCGATAGACGAGTC
ATCTAAAATGGCACGGTGTATTACGTCGGTTGCCGCCATTTCGTCCGTCG
CCCCAGAGACCCCGTTTGGCAAGGTGATGTGTTTGGCCCGCGTGTGTAAG
CTTCCCAGAGTTGGCCCGGTGCTTTTCCCACTCTCTACAGGGTCCGTGCA
CGTTTTATGATTTTTCGAAACGATCAACCTCTCCCCCTGTGTACCGCCGT
TTTCGCACAGATCGGATTTTCGAAGACAAAAGAATTTCCGATTGGCTGCA
CAACAACTTGAAACTTGCCACAAATTTTGGCTGACATTGGGCATTTTGGA
CTTTTGGGGTTAAGGTATGGTGTATATAAAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig13586:2060..6092-

>mRNA_H-paniculata_contig13586.2214.1 ID=mRNA_H-paniculata_contig13586.2214.1|Name=mRNA_H-paniculata_contig13586.2214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig13586:2060..6092- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACATTGCAAAGGAAGCTTCAACTTCTGCAGGCAGCACCTATCAAGA
TATAGTCAAAGCCGTCTCTTTCGATGTACATTGCAAAGGAAGCTTCAACT
TCTGCAGGCAGCACCTATCAAGATATAGTCAAAGCCGTCTCTTTCGACGA
CCTGGCGCTGAGGAGCGAGGCGCAGCCCCTTAATATTGAGATAGAACACC
TAGAACAGACCAAATCCGACAAGACCAGCGGCACAGTCGTTCTCGGTGCC
TTCGTAACCGGCTCTCTCGTGGGGATCATCGTCTGCGCGCCAGCTTTCGT
CGTCGTAGTTTTCGCTGTGGGCGTCGTGGGACTGTATCTTCATGACGGGA
AGACGACCTGGCGCTGAGGAGCGAGGCGCAGCCCCTTAATATTGAGATAG
AACACCTAGAACAGACCAAATCCGACAAGACCAGCGGCACAGTCGTTCTC
GGTGCCTTCGTAACCGGCTCTCTCGTGGGGATCATCGTCTGCGCGCCAGC
TTTCGTCGTCGTAGTTTTCGCTGTGGGCGTCGTGGGACTGTATCTTCATG
ACGGGAAGGTGAAAGAATTTGCGCGGAAAGTCGGAGGCTTCGGGGAAAAA
GTGATCTTGGCTGTGGTGAAGAAAACCCGCGAACTCAACGATCGTTTTCA
CATCGCGGATAAGGTGAAAGAATTTGCGCGGAAAGTCGGAGGCTTCGGGG
AAAAAGTGATCTTGGCTGTGGTGAAGAAAACCCGCGAACTCAACGATCGT
TTTCACATCGCGGATAAGGCGAAGAACCTTGCCAAGGACACGAGGTCACG
GATTCAGAAGGCGGACGAGAAGTGCGGGTTCAGCAAGAACGTAAAGGCGA
GAGCTTCGTCCTTGTGGTCACACATCGATGAGGCGAAGAACCTTGCCAAG
GACACGAGGTCACGGATTCAGAAGGCGGACGAGAAGTGCGGGTTCAGCAA
GAACGTAAAGGCGAGAGCTTCGTCCTTGTGGTCACACATCGATGAGAAAA
TAAGACTGCGACGGATCTTGGGGGAGCAGCGTCCGCCGACGAGTACTGTC
ACCGATGGGACCTAGAAAATAAGACTGCGACGGATCTTGGGGGAGCAGCG
TCCGCCGACGAGTACTGTCACCGATGGGACCTAG
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