prot_H-paniculata_contig13586.2214.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13586.2214.1
Unique Nameprot_H-paniculata_contig13586.2214.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length189
Homology
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BLAST of mRNA_H-paniculata_contig13586.2214.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 4.500e-28
Identity = 64/153 (41.83%), Postives = 87/153 (56.86%), Query Frame = 0 
Query:   39 EIEHLEQTKSDKTSGTVVLGAFVTGSLVGIIVCAPAFVVVVFAVGVVGLYLHDGKVKEFARKVGGFGEKVILAVVKKTRELNDRFHIADKAKNLAKDTRSRIQKADEKCGFSKNVKARASSLWSHIDEKIR---LRRILGEQRPPTSTVTDGT 188
            E  H E    D+ SG +V G+F+ G+LVG+++CAPAFVV++F  G   L   D KV +F+RKVG     ++LAV +  RE N +  + DKAK  AK+   ++     K G   NVKARASSLW  +D++        I   Q    S VTDGT
Sbjct:   38 EQPHQEVIAHDEASGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGT 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13586.2214.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTP8_ECTSI4.500e-2841.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 126..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..89
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..55
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..188
NoneNo IPR availableTMHMMTMhelixcoord: 55..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13586contigH-paniculata_contig13586:3021..6027 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13586.2214.1mRNA_H-paniculata_contig13586.2214.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13586 2060..6092 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13586.2214.1 ID=prot_H-paniculata_contig13586.2214.1|Name=mRNA_H-paniculata_contig13586.2214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp
MYIAKEASTSAGSTYQDIVKAVSFDDLALRSEAQPLNIEIEHLEQTKSDK
TSGTVVLGAFVTGSLVGIIVCAPAFVVVVFAVGVVGLYLHDGKVKEFARK
VGGFGEKVILAVVKKTRELNDRFHIADKAKNLAKDTRSRIQKADEKCGFS
KNVKARASSLWSHIDEKIRLRRILGEQRPPTSTVTDGT*
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