mRNA_H-paniculata_contig13562.2201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13562.2201.1
Unique NamemRNA_H-paniculata_contig13562.2201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13562.2201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13562contigH-paniculata_contig13562:943..2345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1403
Cds size759
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.9816003-UTR-H-paniculata_contig13562:942..15861622929072.9816003-UTR-H-paniculata_contig13562:942..1586Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13562 943..1586 +
1691480721.353399-UTR-H-paniculata_contig13562:942..15861691480721.353399-UTR-H-paniculata_contig13562:942..1586Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13562 943..1586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.996307-CDS-H-paniculata_contig13562:1586..23451622929072.996307-CDS-H-paniculata_contig13562:1586..2345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13562 1587..2345 +
1691480721.3629704-CDS-H-paniculata_contig13562:1586..23451691480721.3629704-CDS-H-paniculata_contig13562:1586..2345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13562 1587..2345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13562.2201.1prot_H-paniculata_contig13562.2201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13562 1587..2345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13562.2201.1

>prot_H-paniculata_contig13562.2201.1 ID=prot_H-paniculata_contig13562.2201.1|Name=mRNA_H-paniculata_contig13562.2201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
MRHSSRNAGALSPTRGGGGGGGGRSELDREEDFARPARSGSNSSIGSMDG
IKDRIGRPAVSSTQNHAGAAELIRLQKQQQQQTVSATERERRSYHHLHQP
YYHQQEHDEYDHDEYDHDRGNAVVADGGGGGRGGLDRDSLGSATGVGAGS
SARPHRLPSASSSSSVAALAAAAAAATATRRPVPPPGPSVPTPKSRTGTG
GEKLYPIEGLGPVLEPRRPRPSPGSIAGPQPWAGQGMKTRRGGVGDVAGG
GAT
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mRNA from alignment at H-paniculata_contig13562:943..2345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13562.2201.1 ID=mRNA_H-paniculata_contig13562.2201.1|Name=mRNA_H-paniculata_contig13562.2201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1403bp|location=Sequence derived from alignment at H-paniculata_contig13562:943..2345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAAAAAGAGAGAGCAAGCACTACATCCTATCGGGCGCCAAGGGTCCGT
GTGCAGGGGCTTGATTCCAGACTTCCACGCATCTGGGTGATTACTTGTTT
ATTCCTGCTGCCCTTTTTGCCGGAGGACCGACTCTCAGACGGAGAACAAA
AAGGTGGAGCTGCGTCTGTGTGTGAGCTTCTTCGTTTAATGCTGGTACGT
AGTACAGCAGTTGGTTGGAACGACGGCAGCACAGCGAACAAACTGCTGCA
ATCGCCCTGAACGCAGTTGAGGCAAGGCCAGCTCGGGAAACGGCGGCTGC
GGAAGAAGAAACAATATCATTAGCAACTACGACAGTGGGCTGTCGGCTAC
GCGTGAGCGTCGCCGGTCGACCACTAACACCCAACATTCACGACGGGCGC
CTATCAGTCCACGGGTGTGCCCGGCAAAGGTGTGAGCGGGCCACCACAAT
CCGACAACGACGCTGCACCTACCAGCAGCGGCAGCAGCGGCAGCAACAGC
AGTAGCACCCGACGACAGTTATCGCAAGACCATAATAGTATTAGTAGTAT
CAGTAGCATCGGTAGCAATCCGACCCGTCGCCCTGTCCGCACAATTTTGC
CGCCAGTATCAGAGCAGGTTCAGTTGACGCCAAGAACGCTGACCATGCGG
CATAGCTCCAGAAACGCCGGTGCACTGTCACCAACACGGGGCGGCGGCGG
CGGCGGCGGCGGCCGCAGCGAGTTAGACAGAGAGGAAGACTTCGCACGCC
CTGCGCGCAGCGGCAGCAACAGTAGCATAGGTAGTATGGATGGCATAAAG
GATCGTATCGGCCGCCCGGCGGTAAGCAGCACGCAGAACCACGCTGGTGC
CGCCGAGTTAATAAGGCTGCAAAAGCAACAGCAGCAACAGACAGTCAGTG
CGACGGAGAGAGAACGACGTTCTTATCATCATCTTCATCAACCTTACTAC
CACCAACAAGAACACGACGAGTATGATCACGACGAGTACGACCATGACCG
AGGTAATGCGGTCGTTGCAGACGGCGGCGGCGGCGGGAGGGGCGGCTTAG
ACCGGGATAGCCTAGGAAGCGCAACCGGAGTTGGCGCAGGATCGTCCGCC
CGCCCTCATCGTTTGCCTTCCGCCTCTTCTTCCTCTAGCGTCGCCGCCCT
CGCCGCGGCGGCCGCGGCGGCCACCGCTACAAGACGCCCCGTTCCGCCCC
CGGGACCGAGCGTGCCGACTCCAAAGAGCCGAACGGGGACGGGCGGCGAA
AAGCTTTACCCCATTGAAGGCTTGGGTCCCGTGCTAGAGCCGAGACGTCC
CAGGCCTTCACCCGGCAGCATCGCAGGGCCGCAGCCTTGGGCAGGGCAAG
GTATGAAGACGCGGAGAGGAGGAGTAGGAGACGTGGCGGGAGGTGGAGCG
ACG
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Coding sequence (CDS) from alignment at H-paniculata_contig13562:943..2345+

>mRNA_H-paniculata_contig13562.2201.1 ID=mRNA_H-paniculata_contig13562.2201.1|Name=mRNA_H-paniculata_contig13562.2201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig13562:943..2345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCATAGCTCCAGAAACGCCGGTGCACTGTCACCAACACGGGGCGG
CGGCGGCGGCGGCGGCGGCCGCAGCGAGTTAGACAGAGAGGAAGACTTCG
CACGCCCTGCGCGCAGCGGCAGCAACAGTAGCATAGGTAGTATGGATGGC
ATAAAGGATCGTATCGGCCGCCCGGCGGTAAGCAGCACGCAGAACCACGC
TGGTGCCGCCGAGTTAATAAGGCTGCAAAAGCAACAGCAGCAACAGACAG
TCAGTGCGACGGAGAGAGAACGACGTTCTTATCATCATCTTCATCAACCT
TACTACCACCAACAAGAACACGACGAGTATGATCACGACGAGTACGACCA
TGACCGAGGTAATGCGGTCGTTGCAGACGGCGGCGGCGGCGGGAGGGGCG
GCTTAGACCGGGATAGCCTAGGAAGCGCAACCGGAGTTGGCGCAGGATCG
TCCGCCCGCCCTCATCGTTTGCCTTCCGCCTCTTCTTCCTCTAGCGTCGC
CGCCCTCGCCGCGGCGGCCGCGGCGGCCACCGCTACAAGACGCCCCGTTC
CGCCCCCGGGACCGAGCGTGCCGACTCCAAAGAGCCGAACGGGGACGGGC
GGCGAAAAGCTTTACCCCATTGAAGGCTTGGGTCCCGTGCTAGAGCCGAG
ACGTCCCAGGCCTTCACCCGGCAGCATCGCAGGGCCGCAGCCTTGGGCAG
GGCAAGGTATGAAGACGCGGAGAGGAGGAGTAGGAGACGTGGCGGGAGGT
GGAGCGACGATGCGGCATAGCTCCAGAAACGCCGGTGCACTGTCACCAAC
ACGGGGCGGCGGCGGCGGCGGCGGCGGCCGCAGCGAGTTAGACAGAGAGG
AAGACTTCGCACGCCCTGCGCGCAGCGGCAGCAACAGTAGCATAGGTAGT
ATGGATGGCATAAAGGATCGTATCGGCCGCCCGGCGGTAAGCAGCACGCA
GAACCACGCTGGTGCCGCCGAGTTAATAAGGCTGCAAAAGCAACAGCAGC
AACAGACAGTCAGTGCGACGGAGAGAGAACGACGTTCTTATCATCATCTT
CATCAACCTTACTACCACCAACAAGAACACGACGAGTATGATCACGACGA
GTACGACCATGACCGAGGTAATGCGGTCGTTGCAGACGGCGGCGGCGGCG
GGAGGGGCGGCTTAGACCGGGATAGCCTAGGAAGCGCAACCGGAGTTGGC
GCAGGATCGTCCGCCCGCCCTCATCGTTTGCCTTCCGCCTCTTCTTCCTC
TAGCGTCGCCGCCCTCGCCGCGGCGGCCGCGGCGGCCACCGCTACAAGAC
GCCCCGTTCCGCCCCCGGGACCGAGCGTGCCGACTCCAAAGAGCCGAACG
GGGACGGGCGGCGAAAAGCTTTACCCCATTGAAGGCTTGGGTCCCGTGCT
AGAGCCGAGACGTCCCAGGCCTTCACCCGGCAGCATCGCAGGGCCGCAGC
CTTGGGCAGGGCAAGGTATGAAGACGCGGAGAGGAGGAGTAGGAGACGTG
GCGGGAGGTGGAGCGACG
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