mRNA_H-paniculata_contig13543.2191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13543.2191.1
Unique NamemRNA_H-paniculata_contig13543.2191.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.900e-31
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHGY 234
            ISGLVFQAAVPKSFTMKM +LSGH LPPHS G VSQ I+VTNAMQG+KSLMMKLKIQ+RRG + ++EVAQVAQFP G+
Sbjct:  811 ISGLVFQAAVPKSFTMKMGALSGHNLPPHSDGVVSQEINVTNAMQGTKSLMMKLKIQFRRGTVNVAEVAQVAQFPAGF 888          
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A2P6VSE4_9CHLO (Tryptophan--tRNA ligase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VSE4_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 1.710e-15
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHGY 234
            +     QAAVPK  T+++E+ S   LPPHSSGAV+Q +HV NA+ G K+L+M+L+I Y     A+ E A+V  FP GY
Sbjct: 1184 LEAFALQAAVPKQMTLRLEAASSVALPPHSSGAVTQRLHVHNALHGQKALVMRLRISYSLEGQAVLEQAEVDGFPAGY 1261          
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A7S2S4J2_9STRA (AP-1 complex subunit gamma n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S4J2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.740e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231
            IS  VFQAAVPK  ++KME  SG  LPP  +G V Q I++ N+MQGSK ++MK+KI Y      + + A V+ FP G
Sbjct:  775 ISNFVFQAAVPKFISLKMEPPSGDTLPPFGTGQVQQRINLVNSMQGSKDIIMKVKIAYTANGENVVQQATVSGFPQG 851          
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A4D9BPW3_SALSN (AP-1 complex subunit gamma n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BPW3_SALSN)

HSP 1 Score: 67.8 bits (164), Expect = 1.960e-11
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    4 SGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231
            S  VFQAAVPK   + +E  SG  LP   +G++ Q + V+N+  G KSL+M+++I Y+     + E  Q++ FPHG
Sbjct:  826 SNFVFQAAVPKFLQLHLEPASGSTLPASGNGSIMQKLKVSNSQHGKKSLVMRVRINYKANGKDVLEDGQISNFPHG 901          
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A4D8YEI8_SALSN (AP-1 complex subunit gamma n=10 Tax=Salvia TaxID=21880 RepID=A0A4D8YEI8_SALSN)

HSP 1 Score: 67.0 bits (162), Expect = 3.670e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    4 SGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231
            S  VFQAAVPK   + +E  SG  LP   +G+++Q + V+N+  G KSL+M+++I Y+     + E  Q++ FPHG
Sbjct:  881 SSFVFQAAVPKFLQLHLEPASGSTLPASGNGSITQKLKVSNSQHGKKSLVMRVRINYKAKDKDVLEDGQISNFPHG 956          
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A4D8ZF04_SALSN (AP-1 complex subunit gamma n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZF04_SALSN)

HSP 1 Score: 66.6 bits (161), Expect = 5.020e-11
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    4 SGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231
            S  VFQAAVPK   + +E  SG  LP    G+++Q + V+N+  G KSL+M+++I Y+     + E  Q++ FPHG
Sbjct:  895 SNFVFQAAVPKFLQLHLEPASGSTLPASGKGSITQKLKVSNSQHGKKSLVMRVRINYKAKDKDVLEDGQISNFPHG 970          
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A9SLN8_PHYPA (AP-1 complex subunit gamma n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SLN8_PHYPA)

HSP 1 Score: 65.9 bits (159), Expect = 9.290e-11
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   13 VFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFP 225
            +FQAAVPK  T++++  SG  LP +SSG ++Q + VTN++ G K L+M++KI Y+     + E  +V  FP
Sbjct:  685 LFQAAVPKFMTLRLDPASGSSLPQNSSGVITQILTVTNSLHGQKPLVMRVKIAYKADGQPVLEQGEVNNFP 755          
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A6P8H956_ACTTE (AP-1 complex subunit gamma n=3 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H956_ACTTE)

HSP 1 Score: 65.9 bits (159), Expect = 9.320e-11
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231
            ++  +FQAAVPK+F ++M+S SG+ +PP+++G+V+Q I V N  Q  + L M++KI Y+     ISE  ++ +FP G
Sbjct:  760 MTDFIFQAAVPKTFQLQMQSPSGNMIPPNNTGSVTQKIQVNNPQQ--QPLRMRIKISYKLNGAPISEQGEINKFPPG 834          
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A2K1JQ28_PHYPA (AP-1 complex subunit gamma n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JQ28_PHYPA)

HSP 1 Score: 65.9 bits (159), Expect = 9.390e-11
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   13 VFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFP 225
            +FQAAVPK  T++++  SG  LP +SSG ++Q + VTN++ G K L+M++KI Y+     + E  +V  FP
Sbjct:  987 LFQAAVPKFMTLRLDPASGSSLPQNSSGVITQILTVTNSLHGQKPLVMRVKIAYKADGQPVLEQGEVNNFP 1057          
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: UPI001B88B424 (AP-1 complex subunit gamma-1-like isoform X1 n=4 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B424)

HSP 1 Score: 65.1 bits (157), Expect = 1.740e-10
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231
            IS  VFQAAVPKSF ++++S SG+ +PP + G+V Q I + N ++  +++ M+L++ Y +   +I+EV +V  FP G
Sbjct:  783 ISDFVFQAAVPKSFQLQLQSPSGNLIPPMNGGSVEQIIKIANPLK--QAIRMRLRMTYTQSGNSITEVGEVNNFPQG 857          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP4_ECTSI1.900e-3179.49AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
A0A2P6VSE4_9CHLO1.710e-1548.72Tryptophan--tRNA ligase n=1 Tax=Micractinium condu... [more]
A0A7S2S4J2_9STRA9.740e-1449.35AP-1 complex subunit gamma n=1 Tax=labyrinthulid q... [more]
A0A4D9BPW3_SALSN1.960e-1140.79AP-1 complex subunit gamma n=1 Tax=Salvia splenden... [more]
A0A4D8YEI8_SALSN3.670e-1140.79AP-1 complex subunit gamma n=10 Tax=Salvia TaxID=2... [more]
A0A4D8ZF04_SALSN5.020e-1140.79AP-1 complex subunit gamma n=2 Tax=Salvia splenden... [more]
A9SLN8_PHYPA9.290e-1142.25AP-1 complex subunit gamma n=1 Tax=Physcomitrium p... [more]
A0A6P8H956_ACTTE9.320e-1141.56AP-1 complex subunit gamma n=3 Tax=Actinia tenebro... [more]
A0A2K1JQ28_PHYPA9.390e-1142.25AP-1 complex subunit gamma n=2 Tax=Physcomitrium p... [more]
UPI001B88B4241.740e-1041.56AP-1 complex subunit gamma-1-like isoform X1 n=4 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13543contigH-paniculata_contig13543:6356..6592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D7FHP4
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.587767-CDS-H-paniculata_contig13543:6355..65921622929071.587767-CDS-H-paniculata_contig13543:6355..6592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13543 6356..6592 -
1691480720.7363591-CDS-H-paniculata_contig13543:6355..65921691480720.7363591-CDS-H-paniculata_contig13543:6355..6592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13543 6356..6592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13543.2191.1prot_H-paniculata_contig13543.2191.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13543 6356..6592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13543.2191.1

>prot_H-paniculata_contig13543.2191.1 ID=prot_H-paniculata_contig13543.2191.1|Name=mRNA_H-paniculata_contig13543.2191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSL
MMKLKIQYRRGAMAISEVAQVAQFPHGY*
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mRNA from alignment at H-paniculata_contig13543:6356..6592-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13543.2191.1 ID=mRNA_H-paniculata_contig13543.2191.1|Name=mRNA_H-paniculata_contig13543.2191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig13543:6356..6592- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCGGGTCTGGTGTTTCAGGCGGCTGTGCCCAAGTCGTTCACCATGAA GATGGAGTCCTTGTCGGGCCATGAGTTACCTCCTCACAGCAGCGGGGCTG TGAGTCAAGCCATTCACGTTACTAACGCGATGCAGGGCTCCAAGAGCTTG ATGATGAAGCTCAAGATCCAGTATAGGCGTGGCGCCATGGCGATTTCGGA AGTAGCGCAGGTAGCTCAATTCCCTCATGGCTATTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13543:6356..6592-

>mRNA_H-paniculata_contig13543.2191.1 ID=mRNA_H-paniculata_contig13543.2191.1|Name=mRNA_H-paniculata_contig13543.2191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig13543:6356..6592- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCGGGTCTGGTGTTTCAGGCGGCTGTGCCCAAGTCGTTCACCATGAA
GATGGAGTCCTTGTCGGGCCATGAGTTACCTCCTCACAGCAGCGGGGCTG
TGAGTCAAGCCATTCACGTTACTAACGCGATGCAGGGCTCCAAGAGCTTG
ATGATGAAGCTCAAGATCCAGTATAGGCGTGGCGCCATGGCGATTTCGGA
AGTAGCGCAGGTAGCTCAATTCCCTCATGGCTATTGAATCTCGGGTCTGG
TGTTTCAGGCGGCTGTGCCCAAGTCGTTCACCATGAAGATGGAGTCCTTG
TCGGGCCATGAGTTACCTCCTCACAGCAGCGGGGCTGTGAGTCAAGCCAT
TCACGTTACTAACGCGATGCAGGGCTCCAAGAGCTTGATGATGAAGCTCA
AGATCCAGTATAGGCGTGGCGCCATGGCGATTTCGGAAGTAGCGCAGGTA
GCTCAATTCCCTCATGGCTATTGA
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