mRNA_H-paniculata_contig13543.2191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.900e-31 Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1 Query: 1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHGY 234 ISGLVFQAAVPKSFTMKM +LSGH LPPHS G VSQ I+VTNAMQG+KSLMMKLKIQ+RRG + ++EVAQVAQFP G+ Sbjct: 811 ISGLVFQAAVPKSFTMKMGALSGHNLPPHSDGVVSQEINVTNAMQGTKSLMMKLKIQFRRGTVNVAEVAQVAQFPAGF 888
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A2P6VSE4_9CHLO (Tryptophan--tRNA ligase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VSE4_9CHLO) HSP 1 Score: 79.3 bits (194), Expect = 1.710e-15 Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHGY 234 + QAAVPK T+++E+ S LPPHSSGAV+Q +HV NA+ G K+L+M+L+I Y A+ E A+V FP GY Sbjct: 1184 LEAFALQAAVPKQMTLRLEAASSVALPPHSSGAVTQRLHVHNALHGQKALVMRLRISYSLEGQAVLEQAEVDGFPAGY 1261
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A7S2S4J2_9STRA (AP-1 complex subunit gamma n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S4J2_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 9.740e-14 Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231 IS VFQAAVPK ++KME SG LPP +G V Q I++ N+MQGSK ++MK+KI Y + + A V+ FP G Sbjct: 775 ISNFVFQAAVPKFISLKMEPPSGDTLPPFGTGQVQQRINLVNSMQGSKDIIMKVKIAYTANGENVVQQATVSGFPQG 851
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A4D9BPW3_SALSN (AP-1 complex subunit gamma n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BPW3_SALSN) HSP 1 Score: 67.8 bits (164), Expect = 1.960e-11 Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 4 SGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231 S VFQAAVPK + +E SG LP +G++ Q + V+N+ G KSL+M+++I Y+ + E Q++ FPHG Sbjct: 826 SNFVFQAAVPKFLQLHLEPASGSTLPASGNGSIMQKLKVSNSQHGKKSLVMRVRINYKANGKDVLEDGQISNFPHG 901
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A4D8YEI8_SALSN (AP-1 complex subunit gamma n=10 Tax=Salvia TaxID=21880 RepID=A0A4D8YEI8_SALSN) HSP 1 Score: 67.0 bits (162), Expect = 3.670e-11 Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 4 SGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231 S VFQAAVPK + +E SG LP +G+++Q + V+N+ G KSL+M+++I Y+ + E Q++ FPHG Sbjct: 881 SSFVFQAAVPKFLQLHLEPASGSTLPASGNGSITQKLKVSNSQHGKKSLVMRVRINYKAKDKDVLEDGQISNFPHG 956
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A4D8ZF04_SALSN (AP-1 complex subunit gamma n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZF04_SALSN) HSP 1 Score: 66.6 bits (161), Expect = 5.020e-11 Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 4 SGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231 S VFQAAVPK + +E SG LP G+++Q + V+N+ G KSL+M+++I Y+ + E Q++ FPHG Sbjct: 895 SNFVFQAAVPKFLQLHLEPASGSTLPASGKGSITQKLKVSNSQHGKKSLVMRVRINYKAKDKDVLEDGQISNFPHG 970
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A9SLN8_PHYPA (AP-1 complex subunit gamma n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SLN8_PHYPA) HSP 1 Score: 65.9 bits (159), Expect = 9.290e-11 Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1 Query: 13 VFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFP 225 +FQAAVPK T++++ SG LP +SSG ++Q + VTN++ G K L+M++KI Y+ + E +V FP Sbjct: 685 LFQAAVPKFMTLRLDPASGSSLPQNSSGVITQILTVTNSLHGQKPLVMRVKIAYKADGQPVLEQGEVNNFP 755
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A6P8H956_ACTTE (AP-1 complex subunit gamma n=3 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H956_ACTTE) HSP 1 Score: 65.9 bits (159), Expect = 9.320e-11 Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231 ++ +FQAAVPK+F ++M+S SG+ +PP+++G+V+Q I V N Q + L M++KI Y+ ISE ++ +FP G Sbjct: 760 MTDFIFQAAVPKTFQLQMQSPSGNMIPPNNTGSVTQKIQVNNPQQ--QPLRMRIKISYKLNGAPISEQGEINKFPPG 834
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: A0A2K1JQ28_PHYPA (AP-1 complex subunit gamma n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JQ28_PHYPA) HSP 1 Score: 65.9 bits (159), Expect = 9.390e-11 Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1 Query: 13 VFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFP 225 +FQAAVPK T++++ SG LP +SSG ++Q + VTN++ G K L+M++KI Y+ + E +V FP Sbjct: 987 LFQAAVPKFMTLRLDPASGSSLPQNSSGVITQILTVTNSLHGQKPLVMRVKIAYKADGQPVLEQGEVNNFP 1057
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Match: UPI001B88B424 (AP-1 complex subunit gamma-1-like isoform X1 n=4 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B424) HSP 1 Score: 65.1 bits (157), Expect = 1.740e-10 Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 1 ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLMMKLKIQYRRGAMAISEVAQVAQFPHG 231 IS VFQAAVPKSF ++++S SG+ +PP + G+V Q I + N ++ +++ M+L++ Y + +I+EV +V FP G Sbjct: 783 ISDFVFQAAVPKSFQLQLQSPSGNLIPPMNGGSVEQIIKIANPLK--QAIRMRLRMTYTQSGNSITEVGEVNNFPQG 857 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13543.2191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13543.2191.1 >prot_H-paniculata_contig13543.2191.1 ID=prot_H-paniculata_contig13543.2191.1|Name=mRNA_H-paniculata_contig13543.2191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp ISGLVFQAAVPKSFTMKMESLSGHELPPHSSGAVSQAIHVTNAMQGSKSLback to top mRNA from alignment at H-paniculata_contig13543:6356..6592- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13543.2191.1 ID=mRNA_H-paniculata_contig13543.2191.1|Name=mRNA_H-paniculata_contig13543.2191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig13543:6356..6592- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13543:6356..6592- >mRNA_H-paniculata_contig13543.2191.1 ID=mRNA_H-paniculata_contig13543.2191.1|Name=mRNA_H-paniculata_contig13543.2191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig13543:6356..6592- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |