mRNA_H-paniculata_contig13530.2187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13530.2187.1
Unique NamemRNA_H-paniculata_contig13530.2187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: A0A6H5JXW2_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.590e-13
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEV 135
            P ++KRYTFMHNGGIPGF +MKR LL+ LG+EAY  IEG+TDSE+
Sbjct:  103 PFKYKRYTFMHNGGIPGFARMKRQLLAQLGDEAYLTIEGSTDSEL 147          
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.090e-13
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEV 135
            P ++KRYTFMHNGGIPGF +MKR LL+ LG+ AY A+EG+TDSE+
Sbjct:  109 PFKYKRYTFMHNGGIPGFARMKRQLLAQLGDAAYLAVEGSTDSEL 153          
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: A0A1Y5T140_9RHOB (Amidohydrolase EgtC n=1 Tax=Pseudooctadecabacter jejudonensis TaxID=1391910 RepID=A0A1Y5T140_9RHOB)

HSP 1 Score: 58.2 bits (139), Expect = 1.480e-8
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEVIVFRVVS 156
            P +  R+TFMHNG +P FPQ++RAL   L +E Y A +GTTDSE++   +++
Sbjct:  101 PFKHGRWTFMHNGQVPHFPQIRRALEQALPDELYAARQGTTDSEMVFLTLLA 152          
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: UPI0006448B37 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448B37)

HSP 1 Score: 57.8 bits (138), Expect = 2.900e-8
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEVIVFRVVSLAISGYSVE 183
            P  FK +++MHNG +  FP++KR +L++L + A+E+I+GTTDSE+    V +L IS Y  E
Sbjct:  103 PFTFKNFSWMHNGTVSYFPKLKRNILNMLTQTAFESIKGTTDSEM----VFALFISNYERE 159          
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: A0A151ZGC8_9MYCE (Putative glutamine amidotransferase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZGC8_9MYCE)

HSP 1 Score: 57.4 bits (137), Expect = 4.060e-8
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEVIVFRVVSLAISGYSVE 183
            P  FK  +FMHNG I  F ++KR++LS+L + A+E I+GTTDSEV+     +L I+ Y  E
Sbjct:  102 PFTFKNLSFMHNGTITYFSKLKRSILSMLSDTAFEMIKGTTDSEVLF----ALFITNYEKE 158          
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: UPI0006450162 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450162)

HSP 1 Score: 57.0 bits (136), Expect = 5.400e-8
Identity = 25/61 (40.98%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEVIVFRVVSLAISGYSVE 183
            P  +K +++MHNG +  FP++KR L+++L + A+E+I+GTTD+EV+     +L I+ Y +E
Sbjct:  107 PFTYKNFSWMHNGTVSYFPKIKRQLINMLSQTAFESIKGTTDTEVLF----ALFITNYEME 163          
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: A0A7J9UZQ3_9MICO (Class II glutamine amidotransferase n=2 Tax=Georgenia TaxID=154116 RepID=A0A7J9UZQ3_9MICO)

HSP 1 Score: 56.6 bits (135), Expect = 6.600e-8
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEVIVFRVVSLAI 165
            P ++ R+ +MHNGGI GFP +KR L +++  + Y  IEG+TDSEV+ +  +++ +
Sbjct:  101 PFRYGRWMWMHNGGITGFPHLKRDLDAVVDPDLYPYIEGSTDSEVLFYLALTMGL 155          
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: A0A356KSB1_9BACT (Class II glutamine amidotransferase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KSB1_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 6.670e-8
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEVIVFRVVSLAISGY 174
            P ++ R +FMHNG I GF Q+KRAL + L +EAY  I+G+TDSE     + +LAI  Y
Sbjct:  103 PFRWGRLSFMHNGAIGGFTQLKRALQAKLSDEAYRWIQGSTDSE----HLFALAIDEY 156          
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: A0A1R3X8A6_9RHOB (Glutamine amidotransferase n=2 Tax=Yoonia rosea TaxID=287098 RepID=A0A1R3X8A6_9RHOB)

HSP 1 Score: 55.1 bits (131), Expect = 2.120e-7
Identity = 22/52 (42.31%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEVIVFRVVS 156
            P +F +++F HNG IP F  ++R +L+ L ++ +EA++GTTDSE+I F +++
Sbjct:  101 PFKFGKWSFCHNGQIPHFKAIRRRMLAALPDQLFEAMQGTTDSEMIFFTLLA 152          
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Match: UPI0019333DA8 (class II glutamine amidotransferase n=1 Tax=Skermanella rosea TaxID=1817965 RepID=UPI0019333DA8)

HSP 1 Score: 54.3 bits (129), Expect = 4.390e-7
Identity = 23/56 (41.07%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 PCQFKRYTFMHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEVIVFRVVSLAIS 168
            P +F R+ FMHNG I G+P ++RA+ +L+ ++ Y   EG+TDSEVI + +++  ++
Sbjct:  101 PFRFDRWLFMHNGQIGGWPVVRRAVENLIADDLYPFREGSTDSEVIFYLLLTNGVA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13530.2187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXW2_9PHAE1.590e-1371.11Glutamine amidotransferase type-2 domain-containin... [more]
D8LKF2_ECTSI4.090e-1368.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y5T140_9RHOB1.480e-848.08Amidohydrolase EgtC n=1 Tax=Pseudooctadecabacter j... [more]
UPI0006448B372.900e-845.90hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A151ZGC8_9MYCE4.060e-847.54Putative glutamine amidotransferase n=1 Tax=Tieghe... [more]
UPI00064501625.400e-840.98hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7J9UZQ3_9MICO6.600e-841.82Class II glutamine amidotransferase n=2 Tax=George... [more]
A0A356KSB1_9BACT6.670e-850.00Class II glutamine amidotransferase n=1 Tax=Planct... [more]
A0A1R3X8A6_9RHOB2.120e-742.31Glutamine amidotransferase n=2 Tax=Yoonia rosea Ta... [more]
UPI0019333DA84.390e-741.07class II glutamine amidotransferase n=1 Tax=Skerma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13530contigH-paniculata_contig13530:265..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.7884598-UTR-H-paniculata_contig13530:264..2911622929070.7884598-UTR-H-paniculata_contig13530:264..291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13530 265..291 +
1691480720.3724983-UTR-H-paniculata_contig13530:264..2911691480720.3724983-UTR-H-paniculata_contig13530:264..291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13530 265..291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.8077188-CDS-H-paniculata_contig13530:291..4471622929070.8077188-CDS-H-paniculata_contig13530:291..447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13530 292..447 +
1691480720.3807967-CDS-H-paniculata_contig13530:291..4471691480720.3807967-CDS-H-paniculata_contig13530:291..447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13530 292..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13530.2187.1prot_H-paniculata_contig13530.2187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13530 292..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13530.2187.1

>prot_H-paniculata_contig13530.2187.1 ID=prot_H-paniculata_contig13530.2187.1|Name=mRNA_H-paniculata_contig13530.2187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MHNGGIPGFPQMKRALLSLLGEEAYEAIEGTTDSEVIVFRVVSLAISGYS
VE
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mRNA from alignment at H-paniculata_contig13530:265..447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13530.2187.1 ID=mRNA_H-paniculata_contig13530.2187.1|Name=mRNA_H-paniculata_contig13530.2187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig13530:265..447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATGCCAGTTCAAGCGGTACACCTTCATGCACAACGGCGGTATCCCTGG GTTTCCTCAGATGAAGCGGGCGCTGTTGTCGCTGCTTGGAGAGGAGGCGT ACGAAGCTATCGAAGGCACCACAGATTCCGAGGTGATCGTTTTTCGTGTT GTGTCCCTTGCAATATCTGGGTACTCCGTAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig13530:265..447+

>mRNA_H-paniculata_contig13530.2187.1 ID=mRNA_H-paniculata_contig13530.2187.1|Name=mRNA_H-paniculata_contig13530.2187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig13530:265..447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACAACGGCGGTATCCCTGGGTTTCCTCAGATGAAGCGGGCGCTGTT
GTCGCTGCTTGGAGAGGAGGCGTACGAAGCTATCGAAGGCACCACAGATT
CCGAGGTGATCGTTTTTCGTGTTGTGTCCCTTGCAATATCTGGGTACTCC
GTAGAAATGCACAACGGCGGTATCCCTGGGTTTCCTCAGATGAAGCGGGC
GCTGTTGTCGCTGCTTGGAGAGGAGGCGTACGAAGCTATCGAAGGCACCA
CAGATTCCGAGGTGATCGTTTTTCGTGTTGTGTCCCTTGCAATATCTGGG
TACTCCGTAGAA
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