mRNA_H-paniculata_contig13479.2164.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13479.2164.1
Unique NamemRNA_H-paniculata_contig13479.2164.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: A0A6H5KLJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLJ2_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 6.100e-109
Identity = 158/196 (80.61%), Postives = 172/196 (87.76%), Query Frame = 1 
Query:    1 QTRDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQEVVSIGGSKDVTLXXXXXXXXXXXXXXAEAAAKEGPECPLKNRILFHVSHKILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLKVRKV 588
            ++RDFTGAVTLLEFNRRSGEDE LEDTL+WLGYCAFHLGNY++AI+AYQE+ S+GG+ +VTL              AE AAK+GPEC LKNR+LFHVSHK+LDENKLM YHQKL+DTNEDQLSLA IHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK   V
Sbjct:    9 KSRDFTGAVTLLEFNRRSGEDETLEDTLMWLGYCAFHLGNYQRAIEAYQELESLGGADEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKLMTYHQKLSDTNEDQLSLAAIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLKACNV 204
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: D8LBC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBC6_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 3.550e-104
Identity = 157/196 (80.10%), Postives = 172/196 (87.76%), Query Frame = 1 
Query:    1 QTRDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQEVVSIGGSKDVTLXXXXXXXXXXXXXXAEAAAKEGPECPLKNRILFHVSHKILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLKVRKV 588
            ++RDFTGAVTLLEFNRRSGED+ LEDTL+WLGYCAFHLGNY++AI+AYQE+ S+GG+ +VTL              AE AAK+GPEC LKNR+LFHVSHK+LDENKLM YHQKL+DTNEDQLSLA IHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK   V
Sbjct:   26 KSRDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCAFHLGNYQRAIEAYQELESLGGADEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKLMTYHQKLSDTNEDQLSLAAIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLKACNV 221
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: A0A836CHL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL9_9STRA)

HSP 1 Score: 254 bits (649), Expect = 8.070e-79
Identity = 127/192 (66.15%), Postives = 155/192 (80.73%), Query Frame = 1 
Query:    7 RDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQEVVSIG-GSKDVTLXXXXXXXXXXXXXXAEAAAKEGPECPLKNRILFHVSHKILDENKLMAYHQKLTD-TNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK 576
            RD+TGA+ LLEFNRRSG+D+ LED L+W+GYCAFH+G Y++A++AY+EVV+IG G  DV L              AE AA  GP+ PL+ R+L H++HK  DE KLM  HQ+L++ ++EDQLSLA IHYLRSHFQEATDIYK+LLLENRD++ALNVYVAMCYYKLDYYDVS+EILAVYLQA P SAVA+NLK
Sbjct:   40 RDYTGALALLEFNRRSGDDDNLEDMLLWIGYCAFHVGRYQRALEAYEEVVAIGAGGGDVHLYVACCHYYLQSYDQAEEAASRGPKGPLRTRLLLHIAHKQNDERKLMQQHQELSEKSSEDQLSLAAIHYLRSHFQEATDIYKKLLLENRDNIALNVYVAMCYYKLDYYDVSMEILAVYLQAQPSSAVAINLK 231
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: A0A2R5G680_9STRA (Intraflagellar transport protein 56 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G680_9STRA)

HSP 1 Score: 243 bits (619), Expect = 2.480e-74
Identity = 119/193 (61.66%), Postives = 153/193 (79.27%), Query Frame = 1 
Query:    1 QTRDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQEVVSIGGS-KDVTLXXXXXXXXXXXXXXAEAAAKEGPECPLKNRILFHVSHKILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK 576
            ++RD+TGA+ LLEFN+ +  D+   ++ +WLGYCA HLG+Y+KA++A+Q++  +G + K+V L              AE  A +GP C L+NR+LFH++HK  DENKLM YHQKL+DT EDQLSLA IHYLR+H+QEATDIYK+LLL++RDDLALNVYVAMCYYKLDYYDVSLEILAVYLQ+ PDS +A+NLK
Sbjct:   38 KSRDYTGAIALLEFNQHA--DDFDAESCMWLGYCAAHLGDYKKALEAFQDLQRLGDTGKEVHLYLAICMYFLQMYDEAEEEALQGPTCGLQNRLLFHIAHKQNDENKLMVYHQKLSDTKEDQLSLAAIHYLRNHYQEATDIYKQLLLQHRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQSHPDSVIAINLK 228
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: A0A7S0T0C7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T0C7_9STRA)

HSP 1 Score: 227 bits (579), Expect = 7.220e-72
Identity = 116/191 (60.73%), Postives = 146/191 (76.44%), Query Frame = 1 
Query:    7 RDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQEVVSIGG-SKDVTLXXXXXXXXXXXXXXAEAAAKEGPECPLKNRILFHVSHKILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK 576
            RDFTGA+TLLEF  +  + E  +D L+W+ YCAFHLG++ +A DAY+E++S    S +V L              AEA A++GP  PLK R+LF++SH++ D+NKLM YHQ L D  EDQL+LA + YLRS +QEA DIYKRLL+E+RDDLALNVYVA+CYYKLDYYDVSLEIL+VYLQA+PDSAVA+NLK
Sbjct:   29 RDFTGALTLLEFKLKCRDGES-KDLLLWIAYCAFHLGHFRRAQDAYKELLSAHEVSDEVYLFLSACMFYQQNYEEAEATAEKGPNTPLKIRLLFNISHRLGDDNKLMKYHQLLRDKREDQLTLASVQYLRSQYQEAIDIYKRLLMESRDDLALNVYVAICYYKLDYYDVSLEILSVYLQAYPDSAVAVNLK 218
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: W4GK49_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GK49_9STRA)

HSP 1 Score: 230 bits (586), Expect = 9.310e-71
Identity = 120/194 (61.86%), Postives = 144/194 (74.23%), Query Frame = 1 
Query:    7 RDFTGAVTLLEFNRRSGEDEMLEDT---LIWLGYCAFHLGNYEKAIDAYQEVVSIGGSKDVTLXXXXXXXXXXXXXXAEAAAKEGPEC-PLKNRILFHVSHKILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK 576
            RDFTGA T+LEFN +S +D  +ED    L+WL YC FHLG+Y++A+D Y+EV      +DV L              A   A +GP   PL+NRILFH +HK+ DE+KL+ YHQKL+   EDQLSLA IHYLR+HFQEATDIYKRLLLENRDD+ALNVYVAMCYYKLDYYDVSLEI+  YLQAFPDS +A+N+K
Sbjct:   36 RDFTGAATILEFNVKS-DDTKVEDKRMHLLWLAYCYFHLGHYQRALDTYEEVRD--PPEDVFLFRACCMYYLQLYKEATKEALKGPSSNPLQNRILFHCAHKLGDEDKLLVYHQKLSQCKEDQLSLAAIHYLRNHFQEATDIYKRLLLENRDDIALNVYVAMCYYKLDYYDVSLEIMQTYLQAFPDSVIAINVK 226
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: F7GKU0_MACMU (Intraflagellar transport protein 56 n=16 Tax=Boreoeutheria TaxID=1437010 RepID=F7GKU0_MACMU)

HSP 1 Score: 223 bits (567), Expect = 2.960e-70
Identity = 110/191 (57.59%), Postives = 140/191 (73.30%), Query Frame = 1 
Query:    7 RDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQEVVSIGG-SKDVTLXXXXXXXXXXXXXXAEAAAKEGPECPLKNRILFHVSHKILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK 576
            RDFTGA+TLLEF R  GE+E  EDT +W+GYCAFHLG+Y++A++ Y+        + +V +              AEAA  +  +  L+NR+LFH++HK  DE KLM++HQ L D  EDQLSLA IHY+RSH+QEA DIYKR+LL+NR+ LALNVYVA+CYYKLDYYDVS E+LAVYLQ  PDS +A+NLK
Sbjct:   37 RDFTGAITLLEFKRHVGEEE--EDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLK 225
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: UPI0004BD93B0 (tetratricopeptide repeat protein 26 isoform X1 n=3 Tax=Equus przewalskii TaxID=9798 RepID=UPI0004BD93B0)

HSP 1 Score: 223 bits (568), Expect = 3.680e-70
Identity = 111/191 (58.12%), Postives = 139/191 (72.77%), Query Frame = 1 
Query:    7 RDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQEVVSIGG-SKDVTLXXXXXXXXXXXXXXAEAAAKEGPECPLKNRILFHVSHKILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK 576
            RDFTGA+TLLEF R  GE E  EDT +W+GYCAFHLG+Y++A++ Y+        + +V +              AEAA  + P+  L+NR+LFH++HK  DE KLM +HQ L D  EDQLSLA IHY+RSH+QEA DIYKR+LL+NR+ LALNVYVA+CYYKLDYYDVS E+LAVYLQ  PDS +A+NLK
Sbjct:   37 RDFTGAITLLEFKRHVGEQE--EDTNLWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDITEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLK 225
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: A0A8C6Y3M5_NAJNA (Intraflagellar transport protein 56 n=4 Tax=Sauria TaxID=32561 RepID=A0A8C6Y3M5_NAJNA)

HSP 1 Score: 223 bits (567), Expect = 7.120e-70
Identity = 111/191 (58.12%), Postives = 140/191 (73.30%), Query Frame = 1 
Query:    7 RDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQEVVSIGGSK-DVTLXXXXXXXXXXXXXXAEAAAKEGPECPLKNRILFHVSHKILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK 576
            RDFTGA+ LLEF R+ GE E  ED  +W+GYCAFHLG+Y++A++ Y+++      K DV +              AE AA + P+  L+NR+LFH++HK  DE KLM +HQ L D  EDQLSLA IHY+RSH+QEA DIYKR+LL+NR+ LALNVYVA+CYYKLDYYDVS E+LAVYLQ  PDS +A+NLK
Sbjct:   36 RDFTGAIALLEFKRQVGEQE--EDADLWIGYCAFHLGDYKRALEEYEDLTKGSACKPDVWVNLACTYFFLGMYTQAEQAALKAPKSRLQNRMLFHLAHKFGDEKKLMNFHQNLQDITEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQVPDSTIALNLK 224
[Close]
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Match: A0A2K5VLF4_MACFA (Intraflagellar transport protein 56 n=2 Tax=Cercopithecinae TaxID=9528 RepID=A0A2K5VLF4_MACFA)

HSP 1 Score: 223 bits (567), Expect = 1.000e-69
Identity = 110/191 (57.59%), Postives = 140/191 (73.30%), Query Frame = 1 
Query:    7 RDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQEVVSIGG-SKDVTLXXXXXXXXXXXXXXAEAAAKEGPECPLKNRILFHVSHKILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRDDLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLK 576
            RDFTGA+TLLEF R  GE+E  EDT +W+GYCAFHLG+Y++A++ Y+        + +V +              AEAA  +  +  L+NR+LFH++HK  DE KLM++HQ L D  EDQLSLA IHY+RSH+QEA DIYKR+LL+NR+ LALNVYVA+CYYKLDYYDVS E+LAVYLQ  PDS +A+NLK
Sbjct:   37 RDFTGAITLLEFKRHVGEEE--EDTNLWIGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEAAGFKASKSRLQNRLLFHLAHKFNDEKKLMSFHQNLQDVTEDQLSLASIHYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDSTIALNLK 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13479.2164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLJ2_9PHAE6.100e-10980.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBC6_ECTSI3.550e-10480.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHL9_9STRA8.070e-7966.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R5G680_9STRA2.480e-7461.66Intraflagellar transport protein 56 n=1 Tax=Hondae... [more]
A0A7S0T0C7_9STRA7.220e-7260.73Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
W4GK49_9STRA9.310e-7161.86Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
F7GKU0_MACMU2.960e-7057.59Intraflagellar transport protein 56 n=16 Tax=Boreo... [more]
UPI0004BD93B03.680e-7058.12tetratricopeptide repeat protein 26 isoform X1 n=3... [more]
A0A8C6Y3M5_NAJNA7.120e-7058.12Intraflagellar transport protein 56 n=4 Tax=Sauria... [more]
A0A2K5VLF4_MACFA1.000e-6957.59Intraflagellar transport protein 56 n=2 Tax=Cercop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13479contigH-paniculata_contig13479:384..6827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.5
Seed ortholog evalue5.7e-85
Seed eggNOG ortholog2880.D8LBC6
Preferred nameTTC26
KEGG koko:K19685
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001655,GO:0001822,GO:0002009,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007399,GO:0008150,GO:0008594,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0035239,GO:0035295,GO:0035720,GO:0035735,GO:0035845,GO:0036064,GO:0039022,GO:0039023,GO:0042073,GO:0042461,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0046530,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060993,GO:0065007,GO:0070925,GO:0071840,GO:0072001,GO:0072073,GO:0072114,GO:0072176,GO:0072178,GO:0097542,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.intraciliary transport
EggNOG OGsKOG3785@1,KOG3785@2759
Ec32 ortholog descriptionTetratricopeptide TPR2
Ec32 orthologEc-27_004420.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size597
Cds size597
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13479.2164.1prot_H-paniculata_contig13479.2164.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13479 384..6827 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.201653-CDS-H-paniculata_contig13479:383..5301622929068.201653-CDS-H-paniculata_contig13479:383..530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13479 384..530 +
1691480719.30241-CDS-H-paniculata_contig13479:383..5301691480719.30241-CDS-H-paniculata_contig13479:383..530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13479 384..530 +
1622929068.2130647-CDS-H-paniculata_contig13479:4108..41891622929068.2130647-CDS-H-paniculata_contig13479:4108..4189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13479 4109..4189 +
1691480719.3151329-CDS-H-paniculata_contig13479:4108..41891691480719.3151329-CDS-H-paniculata_contig13479:4108..4189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13479 4109..4189 +
1622929068.2234073-CDS-H-paniculata_contig13479:5012..51921622929068.2234073-CDS-H-paniculata_contig13479:5012..5192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13479 5013..5192 +
1691480719.3313313-CDS-H-paniculata_contig13479:5012..51921691480719.3313313-CDS-H-paniculata_contig13479:5012..5192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13479 5013..5192 +
1622929068.23372-CDS-H-paniculata_contig13479:6638..68271622929068.23372-CDS-H-paniculata_contig13479:6638..6827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13479 6639..6827 +
1691480719.345469-CDS-H-paniculata_contig13479:6638..68271691480719.345469-CDS-H-paniculata_contig13479:6638..6827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13479 6639..6827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13479.2164.1

>prot_H-paniculata_contig13479.2164.1 ID=prot_H-paniculata_contig13479.2164.1|Name=mRNA_H-paniculata_contig13479.2164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
QTRDFTGAVTLLEFNRRSGEDEMLEDTLIWLGYCAFHLGNYEKAIDAYQE
VVSIGGSKDVTLFLGCCYYYMQMYDKAEAAAKEGPECPLKNRILFHVSHK
ILDENKLMAYHQKLTDTNEDQLSLAGIHYLRSHFQEATDIYKRLLLENRD
DLALNVYVAMCYYKLDYYDVSLEILAVYLQAFPDSAVAMNLKVRKVGK*
back to top

mRNA from alignment at H-paniculata_contig13479:384..6827+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13479.2164.1 ID=mRNA_H-paniculata_contig13479.2164.1|Name=mRNA_H-paniculata_contig13479.2164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6444bp|location=Sequence derived from alignment at H-paniculata_contig13479:384..6827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACAAGGGATTTTACCGGTGCTGTTACATTGCTAGAGTTCAACCGGCG
GTCGGGGGAAGACGAAATGTTAGAGGACACCCTCATCTGGCTAGGCTACT
GCGCGTTCCACCTCGGGAACTACGAAAAGGCTATAGACGCGTATCAAGTG
AGAGAAGGACCGTTGCGATTCGTCCGCCGATGTTCGTGTCATGCACAATT
AGTTGCTATACTCCAAACCGAGCCGTCGTACGATGGGAGGGTTTTTTCCG
GAGATGTTTTCCTGGGAAAGGCTACCCAAACATGCTGACCGTTGCGACGT
TGATCCTTTTGTATCATCGTTTCTTCTTCCGGAGATGCACGTCTAGTCGT
CTTCTTGCTTTCATAAGTGCGATCAATCATTTCACACGTTGGAAGAGTCA
TGATTTGAACCCCTGGCTCTGAGTCCTGGCTTACGACTCGCGAAGATGTT
CGGGAATGACCGGAGTAAACCCAGATAGCCTCGTTTAAGTTTTGGGAGTA
CCTCGAGTAAACCTAGTTAGCCTCCTGTGACTTTGGAGATGACCCTAGTA
CACCAAATCGCACTCACTGGATTCTAATGATGAATTCTTCGGGTTTTTAG
CTATATCAACAGGACATCGCTCACGCAACTACAAACAGCCCAAACACCTA
AACACAGCCTGCACACCTACATACAGTGGTCCGCGGGCTCACATCCATAC
ACACGCGCACACACGCATACACACATACGGCGTGAGGAGGAAGTCTCGAT
ACCGTTTGTGTATGCCGTGCTGTTCCATTTTTCCTTTGAACAAACGACAG
AAACGTTTTCGATCGGTCTCGTTTTGGACAAAAGCGATTCCAGTAAGGGG
CATTTGCAACAAAAGTGTCAGCAACTCTCACAACGTTTCTTGGCACCTAC
CTCTCCCCGCTACTACAAAAAATTCCACTCGAAAAACGTCTTTCCTTGTA
TTTTTTTGTCGTTACCAGAAGTGCGATCCCGACCATAGATGTGCCTCTTC
ACATGCTTTTGTCTGTATAGCGGCCGGGTAGAATCCCGCCCGACAAAAGC
GCCGGCTTGCCTACTTTCAATAGTGCTACTCGGACCGAAAACAGTTTTCT
TGTCTGATTTATTAACCGTTTGAGCCAAGCCGTAAATAAATAGTCAAACT
CGACAGAGATGCGGGAACATATGGCTGATTAAAAAACCGTGGTTTTGCCG
ACCAGCTCCCAGTGGTGCACAAATTACCCGCAGCTGGTTGGACAGCAAGA
TGACGCCATTCATCCATAATTTCATGCTGCAGACTGGTGCCAAGGGAGGT
GTGAAATGTGTGCTTCTGATTTGGCCTCGAATCCACCTCTTCGCGATACC
GTTATTGTTTTGGGTGTGCAGGCGGCATGTTAGACTGCACCCTGTTACTA
CGAAGTACTATCTACGGTAATAGTCTGATTGACCTGCACTGCTCCCCCCT
CACGAGGAAGACTTCAGTGAGTGACCGTCCAGAACGCCTTGCGCTAGACG
AAAAGGTACATCACCTCCTTGAACTTTGTCGGAGGCCATGCTCGCCAGTG
GATTGATTGTGTTCCGTATGTGTTGTGCGGCAGAGAGCAGAGAGCACTCG
ACGTGCTCCATTCCCGCTTGAAGTCGTCTTACTGTTCGTCTAGATGTGGG
TAGGTTTGTACACTGGGAGCTAGTCGGGAAAACCAGCGTTGATTCGCCCA
CCAGATTTTCCTCATGTCTCTGTCGAACTCAACCAGATATGGATACGACT
GAATCAGTTGATAAATCAGAACAAACTGGGTCATTGGTTCCACTAGATGG
GTTGAAAACCAAGCTCTGTTCTCGGGTGGGGTTCAACCGGTCGGGTTATC
GACAGAAACGCTTAAAGAGGCACTACTATGATCGGGCTCGCACTTGTTGC
GACGACGAAGAAAAGAAGAGAAGGTGTTTTCCAGGTGGATTGTTTAAAGC
GTTTTCGGCAGATAGAGGTACCTGCCGAAAAGCGAATGCTCGGCACGTAC
ACTTTTGGGGGGGGGGGGCTCGGACCGTTGCTGCGTATGTTCTCTTCCGA
TAACGCCCTTTATCCCTAAAGGGATCTGTGATGACTGTTTCTGTCGTCTG
TCCTTTTCGTTGTTGTAACTGTTTCTTTCGCCTTTCAGCTGACTCTGTCT
AGTGCCGTTTGTTCCAACTCAGGTCCATGATTGTACATATGTTGTACAGA
AGAAATGAGGCTGCGGACAGTAGTACTTATTGACCGTTAGTCCAAAATTA
CTGGTCGGCGTGCAACGACCCGCGTTTGTTTCAATTCTGAACTCAATTCT
GAACTCAGTTCTGAACCCAATTCTGAACCCAATTCTGAACCCAATTCTGA
ACCCAAAACGAAGGTTAAAACACGTTCGTTCACTGCCTTTCGTGGCGAGC
TGATGCGTCATGGTCCTGGCTACTCGTCGTGTGACTCGTGGTAGTTTCGG
AGGATGACGCGAGTAAATCAAGCTGGACTCGTGGCGGTTTTGAGGAGAAC
TTGGACTTCAGTAAACCGAGTTAGACTCGGGTGATTGGACGGACTACTCG
AGTATACCGAGAGCTAGACTCGTACGGAGTAGGACTTGGCGGGATAATTC
GAGTGAATCGTGAATCAAATTTTTCGACGCCACGTATTTCACATGCATGA
ACGGAATACTCGTTTCGGATGGATAAAATAAGACTCTTTGCATATGCGAA
TCATGTTTTCACCCTCCAGCGAATGTAGGGTACGAATAATTGGAGCATTC
ACAACGAAAATTGAAACCTATTCGCCTAATGGTTCAGAATATGCAGGCAC
ATTTAATCCCCTTTTAGTCGTCTTCACGTACTTATTATCCGGAGCAGGCG
CTTTGTACATGGTCCAGGGGCACATAGAATATATGTTTTCATGTTAAAGC
TACAGGCAGATAATTTCAATTTTTCGTCCAGGGGATGAATAATTGTCAAC
TCAAAAAAGAGGTCTCCTTGTGTCCCCAAAAGGGGTGCCCTTTACTGTAG
GACGAGATAGCTGCTCGAAGTCGCGCGTTGTTTTCGCATCCAGTGAGAGC
ACCCTATTGATATACCGCTAGATAGTCAAGCATGTTTCGTTTGCTGTGTC
GCGTCTGAGCAGATAGCTGGATGGAGGGAAGGGTGAAAAGACACGCGCGG
GTGTTTTTCCGTGGGGTACACTGGGTACAAACATCGTGAATGGCGCAAGT
CACCCGTCACGCCAGCAGTCAAAAACCTATCACAATGTTGGACTGCCAAC
CTTCATGCTGCTAAGCAGTTAAAGCGCCGCTACAGTAGACTAACATTTTT
TTATCAAACGACGAGTCGTTCTACGATAGGGGGTACACATCTTGCGTCAC
TCCTTTCAGCAGTAGGAGTCACTCGTGAGAGTGACTATCCACCTGTGTCA
ACCAAATCAACTTGTTTACATTTTCTTTGTGCTCATTTTTTGGTCGTGCT
TGGAGTCATAGGTTCGAATCCAACAAAACATATCTTCAAATATCTGCAAA
TCTCAAGGAGAGTTTGAGACAGGGTTACTCTCACGTTGGGGACCCGCCAA
CCTCGGCATGAAATATAGGGGATACCCCTATCGTAGGACGACTCCGACAT
CACCTCAAGCTTATTGTTCTCTTTACTCTTCGTCTGCCTTGTCTCGCCAT
GCCGGGGCTCTGTCCTCCCTCGCACTCGATTGGGGTATGGCTGTCAACGT
ACAATCGGGCTGGGGGGTGAGTCAGGAGGTTGTGTCGATCGGGGGTTCCA
AGGACGTGACACTGTTCCTGGGGTGCTGCTACTACTATATGCAGATGTAC
GACAAGGTAATATGAAGCAACGATTTTCAGCGGTGAGGTACGGTGTTTAA
TGCCTCCAATGCCGGCAAGATACATTTTTTTTATCGTGATTCTGAGAGTG
GCAGTGGAGATCACCGATTAGACTAGGAGAGCGAGACCTCAACGCGTGAA
TAAAAGCATTTGCGATCACTCTCGATTGTCCCACGGATGACCGTAGCTTA
ATATGTTTTACACCCAAAATGACAACAATATGCATGTTGACTTTGCAGCC
TACGCTCGTAGTAGCATCTTCTTGAGGGTATCCACATCACGAAGACATTG
CTCCTTGGGCATGCTTTCTTCCAACAAGTGGTTCTCCACTTGACCCACCC
TCGCTTTGCATTGTAGATCAGGTTCGACGGTCATGCTATCGGGATAACAG
TGTCACCATGGATTTGTAACGCACGCCTATACTGATGCAAACCGCTTCAA
GGAAGTTCTTACTTGCCCTGAGGCTGAAATCGTAGTACCGTATGTCATTC
CACCCGAAACAGAAGTATTTCATATTTATATTGTTCCGAAGACGTGGATG
ATATCCGTTTTGTTTTAAACATTATCATTAGAATCCCACACGCTTTAGGG
GTTCATCACCCAAATTGCAACTACGATTCTACCAAAATAAACAAAAGGAT
GTCATCCACGTCTTGTACAAACGTGATCAATTACAATTTGTTTTTGGCGC
AGATAAAGTATACTCCAAAATTTGTTTTTTAATCATTTTGTTTATTAGTC
TTGGTGTCTTCTTGCTGGTTTGTTTATCGCAGACCGCATCTTTATATATG
CCTCTCTTTCGCTCCCGTGCCGTTGGCAGGCAGAGGCAGCGGCAAAGGAG
GGCCCCGAATGCCCACTGAAGAATCGCATACTGTTCCACGTGTCGCACAA
GATCCTTGACGAAAACAAATTGATGGCGTACCACCAGAAACTCACCGACA
CCAACGAGGACCAGTTGTCGCTGGCGGGAATACATTACCTCAGGAGCCAC
TTCCAAGAGGTGATTGGTCGTTTTTTGACGGTTACACCGAGGGAGGTTGC
GTTACAATGAGGGGGGAAACCTGACCGCTGTGACAGCACAGTGAGCGGCA
CAATCGCACTTTAATACCATACTGTGGACATGCCAGTGTAGAAGAGTGTA
CCAGTGAGGTGCGGTTAGTCGTGAAGGGCAACCAATTCCACGCTGCACTT
GAGCATACTTGTAACCCCCCGTAACACGCGTGAGATTACGCTCTCCCGAA
GGAGCTGTGAATCTCTTGTGTGTGAGGATAAAAAAGAGAGGCGAGAAGGA
CGCTGAGTTATCGGAGCGATGCTAGCCTTCGGCCGACAGGTTTAGTGTAG
AGCCGACCCATCGTGGGTCATGTAGCTGCCCTTAGTTTCGCGTTGCGTCG
GCAGCTATATCGGTCTAAATCAGCTGTCAACCTGAATATACGGACACACG
TATGAAGAAGTCACAGTAAGGCCACACAGTTAATAAATAGCGTATGTATT
CAAGAGTAACCCATTTGTAAGTGTGGTCATCATCTGCAACCCGTTTTTCA
GGTTACGAAATTTGCTTGTTTGTCATTCACCTTGTCATCTACTATTTTCG
TTAGCCGTTACATGTGTCTGTCCTGTAGTCGATGGGTTGACTGCTCGATA
TTGCCGAGAAGTTCAAGACAAACGGATCGCTGTATCTCCTCTTCAGTTTG
GAGTCCCTCAGCATAACATCGTGTGTACTTGTCGACTTATTTTTGATACA
CTGTCGAAGCATAGAGCACATGGTAAATACTATGTATACGGCAATGTCTG
TTTATGCTATAGTGGCCCTTCTTAACGAGGTTAGTGAAAAAAAGCGGTCG
AGTTCATTGTAGCTTCTTGACGTATCTTGGGTGATGGCACATGCGACATC
CGGGACATTGGCGCTCCATGACAACGCGAACCCAAATGGGGGCCATGCCG
GACATCGAAAATAGTTTCGTTGAGAACCTTATGTGCTGTACACTCCATGA
CGAGGCGAGCCCCAACTAGTGGCCATGCCAGACTACAAAAATATTTTCGT
GGAGAAAAACTACTTGCTGTGTAAATTCGGTTCGATAGCCAATTCCTTCC
GGTTTTGCGGTGGCTGTCTTCACTGACAACATGTTGGCACGTCTATTTTC
GTTTTGATTAGGTTCGAATACTAGATATACCTCTACGCTGCTTTCAGCTT
AGCTTACAACGCTATCTATGCAATACTTTTACGTGTTTTTTTACTGAAGG
GTATCCCCAAATCGTGCTAGATACAGTCGTTGATTTCCATAGTCCCGGGT
CAAAATATATCAGACCGTTCCGCGCCCGACCCTACCGCGAGTCTCCACTC
TCGCACTACTACTAGTATGTATTGTTATATGTAATATGAATATATGCCCT
ATATATCGTGTTTATACTTCGTCTACATATGCGACTGATTACGATGAAAC
TGCAGGCGACGGACATCTACAAACGCCTCTTGCTGGAAAACCGAGACGAT
TTGGCGCTCAACGTATACGTGGCCATGTGCTACTATAAACTAGACTACTA
CGACGTATCGCTGGAGATACTCGCTGTCTACCTACAGGCGTTTCCGGACA
GTGCCGTAGCTATGAACTTGAAGGTGAGAAAGGTCGGGAAATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13479:384..6827+

>mRNA_H-paniculata_contig13479.2164.1 ID=mRNA_H-paniculata_contig13479.2164.1|Name=mRNA_H-paniculata_contig13479.2164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig13479:384..6827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACAAGGGATTTTACCGGTGCTGTTACATTGCTAGAGTTCAACCGGCG
GTCGGGGGAAGACGAAATGTTAGAGGACACCCTCATCTGGCTAGGCTACT
GCGCGTTCCACCTCGGGAACTACGAAAAGGCTATAGACGCGTATCAACAG
ACAAGGGATTTTACCGGTGCTGTTACATTGCTAGAGTTCAACCGGCGGTC
GGGGGAAGACGAAATGTTAGAGGACACCCTCATCTGGCTAGGCTACTGCG
CGTTCCACCTCGGGAACTACGAAAAGGCTATAGACGCGTATCAAGAGGTT
GTGTCGATCGGGGGTTCCAAGGACGTGACACTGTTCCTGGGGTGCTGCTA
CTACTATATGCAGATGTACGACAAGGAGGTTGTGTCGATCGGGGGTTCCA
AGGACGTGACACTGTTCCTGGGGTGCTGCTACTACTATATGCAGATGTAC
GACAAGGCAGAGGCAGCGGCAAAGGAGGGCCCCGAATGCCCACTGAAGAA
TCGCATACTGTTCCACGTGTCGCACAAGATCCTTGACGAAAACAAATTGA
TGGCGTACCACCAGAAACTCACCGACACCAACGAGGACCAGTTGTCGCTG
GCGGGAATACATTACCTCAGGAGCCACTTCCAAGAGGCAGAGGCAGCGGC
AAAGGAGGGCCCCGAATGCCCACTGAAGAATCGCATACTGTTCCACGTGT
CGCACAAGATCCTTGACGAAAACAAATTGATGGCGTACCACCAGAAACTC
ACCGACACCAACGAGGACCAGTTGTCGCTGGCGGGAATACATTACCTCAG
GAGCCACTTCCAAGAGGCGACGGACATCTACAAACGCCTCTTGCTGGAAA
ACCGAGACGATTTGGCGCTCAACGTATACGTGGCCATGTGCTACTATAAA
CTAGACTACTACGACGTATCGCTGGAGATACTCGCTGTCTACCTACAGGC
GTTTCCGGACAGTGCCGTAGCTATGAACTTGAAGGTGAGAAAGGTCGGGA
AATGAGCGACGGACATCTACAAACGCCTCTTGCTGGAAAACCGAGACGAT
TTGGCGCTCAACGTATACGTGGCCATGTGCTACTATAAACTAGACTACTA
CGACGTATCGCTGGAGATACTCGCTGTCTACCTACAGGCGTTTCCGGACA
GTGCCGTAGCTATGAACTTGAAGGTGAGAAAGGTCGGGAAATGA
back to top