prot_H-paniculata_contig13449.2147.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13449.2147.1
Unique Nameprot_H-paniculata_contig13449.2147.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length279
Homology
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: D8LFT0_ECTSI (TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT0_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 5.590e-112
Identity = 222/293 (75.77%), Postives = 228/293 (77.82%), Query Frame = 0
Query:    1 MKWKVRGGLMGTASGGQSLRHSGQSDSMPGGRMRDVHDARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGGDXXXXXXXXXXXXKRKNPSGADGGATDDMFLRFAAQEAEREKXXXXXXXXXXXXXXREAG--------------GRLETGSVDPLVDLTSQWGDHHTREVDDSDPVEERSEAAKKRKQVVGKFNRHARLV 279
            MKWK RGGL+GTASGGQSLRH    DSMPGGRMR+VHDARQRAALLAGD+VLTAQYREMVDG VVTEEEFWESRRRTLAEE AK  SR  GTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRG   XXXXXXXXXXXX                             XXXXXXXXXXXXXX                  GRLE+GSVDP+VDLTSQWGDHH REVDDSDP EE SEAA KRK+VVGKFNRHARLV
Sbjct:  152 MKWKTRGGLLGTASGGQSLRHR---DSMPGGRMRNVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRLESGSVDPMVDLTSQWGDHHAREVDDSDPTEELSEAANKRKEVVGKFNRHARLV 441          
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A6H5JXC6_9PHAE (BSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC6_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 6.680e-92
Identity = 208/301 (69.10%), Postives = 213/301 (70.76%), Query Frame = 0
Query:    1 MKWKVRGGLMGTASGGQSLRHSGQSDSMPGGRMRDVHDARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGGDXXXXXXXXXXXXKRKNPSGADGGATDDMFLRFAAQEAEREKXXXXXXXXXXXXXX--------------------REAGGRLET--GSVDPLVDLTSQWGDHHTREVDDSDPVEERSEAAKKRKQVVGKFNRHARLV 279
            MKWK RGGL+GTASGGQSLRHS     MPGGRMRDVHDARQRAALLAGD+VLTAQYREMVDG VVTEEEFWESRRRTLAEE AK  SR  GTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRG   XXXXXXXXXXXX                             XXXXXXXXXXXXXX                    R+A  R     G  D  V      G   +R VDDSDP EE SEAA KRK+VVGKFNRHARLV
Sbjct:   81 MKWKTRGGLLGTASGGQSLRHS-----MPGGRMRDVHDARQRAALLAGDEVLTAQYREMVDGAVVTEEEFWESRRRTLAEEDAKTASRHTGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRRQARERKRGPYGGPDFAV-----GGSPRSRGVDDSDPTEELSEAANKRKEVVGKFNRHARLV 371          
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A835YZ40_9STRA (BSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ40_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.370e-36
Identity = 118/251 (47.01%), Postives = 143/251 (56.97%), Query Frame = 0
Query:   39 ARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGGDXXXXXXXXXXXXKRKNPSGADGGATDDMFLRFAAQ---------EAEREKXXXXXXXXXXXXXXREAGGRLE-TGSVDPLVDLTSQWGDHHTREVDDSDPVEERSEAAKKRKQVVGKFNRHARLV 279
            A++RAALLA D VL AQY ++V+GGV+++ EFW  RR  L  EAA   +RR G  S + +D V          F+L  R IH IF MYP V +AY+A VP E+SEKEFW KY QS Y+ RDRGG                    GA   A DDMF RFAA+               XXXXXXXXXXXX    A  RL  T  VDP VDL +Q+ D+H+R VDD  P EER+ AA  +  V+ + NRHA LV
Sbjct:  147 AQRRAALLARDAVLRAQYADVVEGGVLSDAEFWAGRRGMLEGEAAAARARRQGARSALGAD-VRPAVEGAKQVFRLTPRDIHQIFLMYPAVERAYKAKVPVELSEKEFWVKYFQSQYYTRDRGGA---------------AKAGGATISAGDDMFSRFAAEYEXXXXXXXXXXXXXXXXXXXXXXXXXRGNSAQQRLSGTEGVDPTVDLAAQFSDYHSRPVDDRGP-EERAGAADAQA-VIERLNRHAALV 379          
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A2P4XBN0_9STRA (General transcription factor IIH subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XBN0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.670e-24
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 0
Query:   38 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 163
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL A+      +K+ LNA  IH IF  YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  123 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASK--RQKTGKTSAILTDLAADNEGGNVVKYNLNAEVIHQIFIQYPAVYMAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 246          
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A421FK41_9STRA (BSD domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FK41_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.170e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 0
Query:   38 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 163
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL A+  + G + K+ LNA  IH IF  YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  102 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASK--RQKTGKTSAILTDLAADNDAAGNVVKYNLNAEVIHQIFIQYPAVYMAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 226          
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A3F2RJ52_9STRA (BSD domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJ52_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.910e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 0
Query:   38 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 163
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL A+  + G + K+ LNA  IH IF  YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  123 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASK--RQKTGKTSAILTDLAADNDAAGNVVKYNLNAEVIHQIFIQYPAVYMAYQGQVPDKMTETEFWGAFFKSKYFHRDRKAG 247          
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A662X0X0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0X0_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.010e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 0
Query:   38 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 163
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL  +  + G + K+ LNA  IH IF  YP V+ AYQA VP +M+E EFW  + +S YF+RDR  G
Sbjct:  150 EIKQRAALLAANPTLKRQHTEMVNDGLISEEDFWASRRHLIAAEASK--RQKTGKTSAILTDLAGDNDTGGNVVKYNLNAEVIHQIFIQYPAVYMAYQAQVPDKMTETEFWGAFFKSKYFHRDRKAG 274          
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A024FZ08_9STRA (BSD domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZ08_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.360e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = 0
Query:   38 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 163
            + +QRAALLA D  L  Q+ EMV+ G+++EE+FW++RR  LA EA+K   ++ G  S + +DL  +  S G + K+ LNA  IH IF  YP +  AYQ  VP ++SE EFW+ + +S YF+RDR  G
Sbjct:  131 EIKQRAALLASDTNLKRQHTEMVNQGLISEEDFWQARRHLLANEASK--RQKTGKTSSLLTDLAGKNESGGNVVKYNLNAEVIHQIFVQYPSIHLAYQDQVPDKLSETEFWSAFFKSKYFHRDRKAG 255          
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A0P1APW3_PLAHL (General transcription factor iih n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APW3_PLAHL)

HSP 1 Score: 109 bits (272), Expect = 2.490e-23
Identity = 59/127 (46.46%), Postives = 82/127 (64.57%), Query Frame = 0
Query:   38 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 163
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++    S + +DL A   S G + K+ LNA  IH IFT YP V+ AYQ  VP +M+E EFW  + +S YF+RDR  G
Sbjct:  124 EIKQRAALLAANPALKRQHTEMVNDGLISEEDFWASRRHLIAGEASK--RQKTAKTSAILTDLAANNDSGGNVVKYNLNAEVIHQIFTQYPAVYMAYQEQVPDKMTETEFWGAFFKSKYFHRDRKAG 248          
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Match: A0A0X7YIL8_GLOUL (Putative general transcription factor IIH subunit (Fragment) n=19 Tax=Globisporangium TaxID=1448052 RepID=A0A0X7YIL8_GLOUL)

HSP 1 Score: 107 bits (266), Expect = 4.250e-23
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 0
Query:   38 DARQRAALLAGDDVLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDLVAETTSTGTL-KFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKYIQSAYFNRDRGGG 163
            + +QRAALLA +  L  Q+ EMV+ G+++EE+FW SRR  +A EA+K   ++ G  S + +DL  +  + G + K+ LNA  IH IF  YP V  AYQA VP +M+E EFW  + +S YF+RDR  G
Sbjct:   37 EIKQRAALLAANPTLKRQHTEMVNEGLISEEDFWASRRHLIANEASK--RQKTGKTSAILTDLSGDNDTGGNVVKYNLNAEVIHQIFIQYPAVHLAYQAQVPDKMTETEFWGAFFKSKYFHRDRKAG 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13449.2147.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT0_ECTSI5.590e-11275.77TFIIH subunit (Partial) (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXC6_9PHAE6.680e-9269.10BSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YZ40_9STRA1.370e-3647.01BSD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A2P4XBN0_9STRA1.670e-2445.24General transcription factor IIH subunit (Fragment... [more]
A0A421FK41_9STRA1.170e-2345.67BSD domain-containing protein n=2 Tax=Phytophthora... [more]
A0A3F2RJ52_9STRA1.910e-2345.67BSD domain-containing protein n=1 Tax=Phytophthora... [more]
A0A662X0X0_9STRA2.010e-2345.67Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A024FZ08_9STRA2.360e-2345.67BSD domain-containing protein n=1 Tax=Albugo candi... [more]
A0A0P1APW3_PLAHL2.490e-2346.46General transcription factor iih n=1 Tax=Plasmopar... [more]
A0A0X7YIL8_GLOUL4.250e-2345.67Putative general transcription factor IIH subunit ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005607BSD domainSMARTSM00751wurzfinal6coord: 106..158
e-value: 2.6E-7
score: 40.3
IPR005607BSD domainPFAMPF03909BSDcoord: 111..160
e-value: 4.0E-10
score: 39.6
IPR005607BSD domainPROSITEPS50858BSDcoord: 106..158
score: 11.021
IPR027079TFIIH subunit Tfb1/GTF2H1PANTHERPTHR12856TRANSCRIPTION INITIATION FACTOR IIH-RELATEDcoord: 37..279
NoneNo IPR availablePANTHERPTHR12856:SF0GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 1coord: 37..279
NoneNo IPR availableSUPERFAMILY140383BSD domain-likecoord: 36..75
NoneNo IPR availableSUPERFAMILY140383BSD domain-likecoord: 112..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13449contigH-paniculata_contig13449:2124..6703 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13449.2147.1mRNA_H-paniculata_contig13449.2147.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13449 1950..6703 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13449.2147.1 ID=prot_H-paniculata_contig13449.2147.1|Name=mRNA_H-paniculata_contig13449.2147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
MKWKVRGGLMGTASGGQSLRHSGQSDSMPGGRMRDVHDARQRAALLAGDD
VLTAQYREMVDGGVVTEEEFWESRRRTLAEEAAKVTSRRVGTPSEMPSDL
VAETTSTGTLKFKLNARTIHSIFTMYPIVFKAYQANVPTEMSEKEFWTKY
IQSAYFNRDRGGGDGGGDGGGGGSGAKRKNPSGADGGATDDMFLRFAAQE
AEREKAEQEQGATAAGGGGREAGGRLETGSVDPLVDLTSQWGDHHTREVD
DSDPVEERSEAAKKRKQVVGKFNRHARLV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005607BSD_dom
IPR027079Tfb1/GTF2H1