mRNA_H-paniculata_contig13415.2133.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 141 bits (356), Expect = 4.090e-37 Identity = 68/136 (50.00%), Postives = 89/136 (65.44%), Query Frame = 1 Query: 19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 A LWHRR+GH++ +SLD+ +K NGV ++G + CDVCAV S Q H K A + PFQLV TD+MGP +P ALG F + K D++ KW E +L+K K T+ A Q F QSV+ P R+E +RADKGGE T Sbjct: 266 AALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYT 401
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.010e-33 Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1 Query: 19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 A LWHRR+GH+N KSLD+ +++ +G+ + G V DC C + KS Q H K A + V PFQLVF D +GP TP ALG FK +K D++TKW E L+K K ++ A + F + VIP RI LRADKG E T Sbjct: 573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFT 708
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.030e-33 Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1 Query: 19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 A LWHRR+GH+N KSLD+ +++ +G+ + G V DC C + KS Q H K A + V PFQLVF D +GP TP ALG FK +K D++TKW E L+K K ++ A + F + VIP RI LRADKG E T Sbjct: 695 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFT 830
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.030e-33 Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1 Query: 19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 A LWHRR+GH+N KSLD+ +++ +G+ + G V DC C + KS Q H K A + V PFQLVF D +GP TP ALG FK +K D++TKW E L+K K ++ A + F + VIP RI LRADKG E T Sbjct: 573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFT 708
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.650e-32 Identity = 66/136 (48.53%), Postives = 83/136 (61.03%), Query Frame = 1 Query: 19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 A LWHRR+GH+N KSLD+ +K +NGV V DC CA+ KS Q H K A + VK PFQLVF D +GP TP ALG FK +K D+ TKW E L+K K ++ + F + V+P+G I LR D G E T Sbjct: 526 ANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFT 661
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 122 bits (306), Expect = 6.130e-32 Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1 Query: 19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEAL---GDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 A WHRRLGHLN +SLD+ +K GV + ++ C VC + K Q H K + ++ P QLV D MGP+ P A G F KI+D+YTK E YLL+ K DT A ++ V G+RIE +R DKGGE+T Sbjct: 42 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 125 bits (313), Expect = 1.670e-30 Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 1 Query: 19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 A LWHRR+GH+N KSLD+ +K NGV + G V DC VC + KS Q H K + V PFQ V D +GP TP ALG FK +K D+ TKW E L+K + ++ + F + V+P+G RI LR D G E T Sbjct: 286 ADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFT 421
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 124 bits (312), Expect = 2.360e-30 Identity = 56/134 (41.79%), Postives = 82/134 (61.19%), Query Frame = 1 Query: 25 LWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 LWHRRL H + ++ + GV + C+ C ++KS Q H KTA H P Q V+TD++GPI+P A G F VSK +DEY++ YL+++K + + + F+ +VIP+GFR+ERLR+D GGE T Sbjct: 470 LWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYT 603
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 123 bits (308), Expect = 7.110e-30 Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1 Query: 19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEAL---GDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 A WHRRLGHLN +SLD+ +K GV + ++ C VC + K Q H K + ++ P QLV D MGP+ P A G F KI+D+YTK E YLL+ K DT A ++ V G+RIE +R DKGGE+T Sbjct: 418 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 556
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE) HSP 1 Score: 122 bits (306), Expect = 8.510e-30 Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1 Query: 19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEAL---GDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426 A WHRRLGHLN +SLD+ +K GV + ++ C VC + K Q H K + ++ P QLV D MGP+ P A G F KI+D+YTK E YLL+ K DT A ++ V G+RIE +R DKGGE+T Sbjct: 42 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13415.2133.1 >prot_H-paniculata_contig13415.2133.1 ID=prot_H-paniculata_contig13415.2133.1|Name=mRNA_H-paniculata_contig13415.2133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp MQAAADATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSback to top mRNA from alignment at H-paniculata_contig13415:6593..7018- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13415.2133.1 ID=mRNA_H-paniculata_contig13415.2133.1|Name=mRNA_H-paniculata_contig13415.2133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig13415:6593..7018- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13415:6593..7018- >mRNA_H-paniculata_contig13415.2133.1 ID=mRNA_H-paniculata_contig13415.2133.1|Name=mRNA_H-paniculata_contig13415.2133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig13415:6593..7018- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |