mRNA_H-paniculata_contig13415.2133.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13415.2133.1
Unique NamemRNA_H-paniculata_contig13415.2133.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.090e-37
Identity = 68/136 (50.00%), Postives = 89/136 (65.44%), Query Frame = 1
Query:   19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            A LWHRR+GH++ +SLD+ +K   NGV ++G +  CDVCAV  S Q  H K A +    PFQLV TD+MGP +P ALG F  + K  D++ KW E +L+K K  T+ A Q F QSV+ P   R+E +RADKGGE T
Sbjct:  266 AALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYT 401          
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.010e-33
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            A LWHRR+GH+N KSLD+ +++  +G+ + G V DC  C + KS Q  H K A + V  PFQLVF D +GP TP ALG FK  +K  D++TKW E  L+K K  ++ A + F +  VIP   RI  LRADKG E T
Sbjct:  573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFT 708          
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.030e-33
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            A LWHRR+GH+N KSLD+ +++  +G+ + G V DC  C + KS Q  H K A + V  PFQLVF D +GP TP ALG FK  +K  D++TKW E  L+K K  ++ A + F +  VIP   RI  LRADKG E T
Sbjct:  695 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFT 830          
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.030e-33
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            A LWHRR+GH+N KSLD+ +++  +G+ + G V DC  C + KS Q  H K A + V  PFQLVF D +GP TP ALG FK  +K  D++TKW E  L+K K  ++ A + F +  VIP   RI  LRADKG E T
Sbjct:  573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFT 708          
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.650e-32
Identity = 66/136 (48.53%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            A LWHRR+GH+N KSLD+ +K  +NGV     V DC  CA+ KS Q  H K A + VK PFQLVF D +GP TP ALG FK  +K  D+ TKW E  L+K K  ++ +   F +  V+P+G  I  LR D G E T
Sbjct:  526 ANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFT 661          
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.130e-32
Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEAL---GDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            A  WHRRLGHLN +SLD+ +K    GV +  ++  C VC + K  Q  H K +  ++  P QLV  D MGP+ P A    G F    KI+D+YTK  E YLL+ K DT  A  ++   V    G+RIE +R DKGGE+T
Sbjct:   42 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180          
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.670e-30
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 1
Query:   19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            A LWHRR+GH+N KSLD+ +K   NGV + G V DC VC + KS Q  H K   + V  PFQ V  D +GP TP ALG FK  +K  D+ TKW E  L+K +  ++ +   F +  V+P+G RI  LR D G E T
Sbjct:  286 ADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFT 421          
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.360e-30
Identity = 56/134 (41.79%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   25 LWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            LWHRRL H +   ++   +    GV     +  C+ C ++KS Q  H KTA H    P Q V+TD++GPI+P A G F  VSK +DEY++    YL+++K + +   + F+  +VIP+GFR+ERLR+D GGE T
Sbjct:  470 LWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYT 603          
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.110e-30
Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEAL---GDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            A  WHRRLGHLN +SLD+ +K    GV +  ++  C VC + K  Q  H K +  ++  P QLV  D MGP+ P A    G F    KI+D+YTK  E YLL+ K DT  A  ++   V    G+RIE +R DKGGE+T
Sbjct:  418 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 556          
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 8.510e-30
Identity = 61/139 (43.88%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   19 ATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKSHQLAHLKTADHKVKYPFQLVFTDMMGPITPEAL---GDFKCVSKISDEYTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT 426
            A  WHRRLGHLN +SLD+ +K    GV +  ++  C VC + K  Q  H K +  ++  P QLV  D MGP+ P A    G F    KI+D+YTK  E YLL+ K DT  A  ++   V    G+RIE +R DKGGE+T
Sbjct:   42 ADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENT 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13415.2133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE4.090e-3750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJN3_9PHAE1.010e-3348.53Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.030e-3348.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.030e-3348.53Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JBV6_9PHAE1.650e-3248.53Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KZ34_9PHAE6.130e-3243.88Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KXM1_9PHAE1.670e-3046.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY84_9PHAE2.360e-3041.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE7.110e-3043.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCM0_9PHAE8.510e-3043.88Integrase catalytic domain-containing protein n=5 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13415contigH-paniculata_contig13415:6593..7018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.2
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog4081.Solyc08g062410.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.6076465-CDS-H-paniculata_contig13415:6592..70181622929063.6076465-CDS-H-paniculata_contig13415:6592..7018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13415 6593..7018 -
1691480717.434889-CDS-H-paniculata_contig13415:6592..70181691480717.434889-CDS-H-paniculata_contig13415:6592..7018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13415 6593..7018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13415.2133.1prot_H-paniculata_contig13415.2133.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13415 6593..7018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13415.2133.1

>prot_H-paniculata_contig13415.2133.1 ID=prot_H-paniculata_contig13415.2133.1|Name=mRNA_H-paniculata_contig13415.2133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MQAAADATLWHRRLGHLNCKSLDLPKKRNHNGVSFDGTVPDCDVCAVEKS
HQLAHLKTADHKVKYPFQLVFTDMMGPITPEALGDFKCVSKISDEYTKWT
ETYLLKSKGDTLSAFQSFVQSVVIPSGFRIERLRADKGGEDT
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mRNA from alignment at H-paniculata_contig13415:6593..7018-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13415.2133.1 ID=mRNA_H-paniculata_contig13415.2133.1|Name=mRNA_H-paniculata_contig13415.2133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=426bp|location=Sequence derived from alignment at H-paniculata_contig13415:6593..7018- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGCTGCGGCTGATGCCACCCTGTGGCATCGGCGACTTGGACACCT CAACTGCAAGAGTCTGGACCTTCCGAAGAAGAGGAACCACAATGGGGTGA GCTTCGATGGGACCGTTCCAGATTGCGACGTCTGCGCCGTGGAGAAGAGC CACCAACTGGCCCACCTCAAGACGGCTGATCACAAGGTCAAGTACCCTTT CCAGCTAGTCTTCACAGACATGATGGGGCCCATCACGCCGGAGGCACTCG GGGACTTCAAGTGCGTTAGCAAGATCTCCGACGAATACACCAAATGGACC GAAACCTACCTGTTGAAGTCCAAGGGCGACACTCTCAGCGCATTCCAGTC GTTCGTGCAATCGGTGGTGATTCCTAGCGGCTTTCGCATCGAGCGCCTGA GAGCTGACAAAGGAGGCGAAGATACC
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Coding sequence (CDS) from alignment at H-paniculata_contig13415:6593..7018-

>mRNA_H-paniculata_contig13415.2133.1 ID=mRNA_H-paniculata_contig13415.2133.1|Name=mRNA_H-paniculata_contig13415.2133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig13415:6593..7018- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGCTGCGGCTGATGCCACCCTGTGGCATCGGCGACTTGGACACCT
CAACTGCAAGAGTCTGGACCTTCCGAAGAAGAGGAACCACAATGGGGTGA
GCTTCGATGGGACCGTTCCAGATTGCGACGTCTGCGCCGTGGAGAAGAGC
CACCAACTGGCCCACCTCAAGACGGCTGATCACAAGGTCAAGTACCCTTT
CCAGCTAGTCTTCACAGACATGATGGGGCCCATCACGCCGGAGGCACTCG
GGGACTTCAAGTGCGTTAGCAAGATCTCCGACGAATACACCAAATGGACC
GAAACCTACCTGTTGAAGTCCAAGGGCGACACTCTCAGCGCATTCCAGTC
GTTCGTGCAATCGGTGGTGATTCCTAGCGGCTTTCGCATCGAGCGCCTGA
GAGCTGACAAAGGAGGCGAAGATACCATGCAAGCTGCGGCTGATGCCACC
CTGTGGCATCGGCGACTTGGACACCTCAACTGCAAGAGTCTGGACCTTCC
GAAGAAGAGGAACCACAATGGGGTGAGCTTCGATGGGACCGTTCCAGATT
GCGACGTCTGCGCCGTGGAGAAGAGCCACCAACTGGCCCACCTCAAGACG
GCTGATCACAAGGTCAAGTACCCTTTCCAGCTAGTCTTCACAGACATGAT
GGGGCCCATCACGCCGGAGGCACTCGGGGACTTCAAGTGCGTTAGCAAGA
TCTCCGACGAATACACCAAATGGACCGAAACCTACCTGTTGAAGTCCAAG
GGCGACACTCTCAGCGCATTCCAGTCGTTCGTGCAATCGGTGGTGATTCC
TAGCGGCTTTCGCATCGAGCGCCTGAGAGCTGACAAAGGAGGCGAAGATA
CC
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