mRNA_H-paniculata_contig13414.2132.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13414.2132.1
Unique NamemRNA_H-paniculata_contig13414.2132.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13414.2132.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.110e-5
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:  204 KRCFHQGCPKQPSYGVEGTKKAEFCARHAENGMV 305
            +RC H+ C K P+YGV GT+KAEFCA HA +GMV
Sbjct:   15 RRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMV 48
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BLAST of mRNA_H-paniculata_contig13414.2132.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.350e-5
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:  204 KRCFHQGCPKQPSYGVEGTKKAEFCARHAENGMV 305
            KRC H GC K+PSYG +G+KKAE CA+HA  GMV
Sbjct:    7 KRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_H-paniculata_contig13414.2132.1 vs. uniprot
Match: A0A6H5KW71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW71_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.400e-5
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  210 CFHQGCPKQPSYGVEGTKKAEFCARHAENGMVDVL 314
            C H GCPKQP YGV GTKK EFC+ H + GMVDV+
Sbjct:    4 CGHAGCPKQPKYGVAGTKKREFCSGHRKAGMVDVV 38
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BLAST of mRNA_H-paniculata_contig13414.2132.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.930e-5
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 3 
Query:  204 KRCFHQGCPKQPSYGVEGTKKAEFCARHAENGM 302
            +RC H GC K+PS+G +G+KK EFCA+HA  GM
Sbjct:    7 RRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
[Close]
BLAST of mRNA_H-paniculata_contig13414.2132.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 8.210e-5
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 3 
Query:  204 KRCFHQGCPKQPSYGVEGTKKAEFCARHAENGMVDV 311
            K C H GC  + ++GV G+KKAEFC+RHAE+GMVD+
Sbjct:    7 KTCDHVGCTTRANFGVPGSKKAEFCSRHAEDGMVDL 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13414.2132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5LBM3_9PHAE1.110e-564.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUJ6_ECTSI1.350e-567.65EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KW71_9PHAE2.400e-568.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMB1_ECTSI7.930e-560.61EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LCH9_ECTSI8.210e-561.11EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13414contigH-paniculata_contig13414:4410..6375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1966
Cds size1053
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13414.2132.1prot_H-paniculata_contig13414.2132.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13414 4598..5650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.480282-UTR-H-paniculata_contig13414:4409..45971622929063.480282-UTR-H-paniculata_contig13414:4409..4597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13414 4410..4597 +
1691480717.4063215-UTR-H-paniculata_contig13414:4409..45971691480717.4063215-UTR-H-paniculata_contig13414:4409..4597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13414 4410..4597 +
1622929063.572699-UTR-H-paniculata_contig13414:5650..63751622929063.572699-UTR-H-paniculata_contig13414:5650..6375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13414 5651..6375 +
1691480717.4260464-UTR-H-paniculata_contig13414:5650..63751691480717.4260464-UTR-H-paniculata_contig13414:5650..6375Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13414 5651..6375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.5567214-CDS-H-paniculata_contig13414:4597..56501622929063.5567214-CDS-H-paniculata_contig13414:4597..5650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13414 4598..5650 +
1691480717.417829-CDS-H-paniculata_contig13414:4597..56501691480717.417829-CDS-H-paniculata_contig13414:4597..5650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13414 4598..5650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13414.2132.1

>prot_H-paniculata_contig13414.2132.1 ID=prot_H-paniculata_contig13414.2132.1|Name=mRNA_H-paniculata_contig13414.2132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=351bp
MLRQRKRCFHQGCPKQPSYGVEGTKKAEFCARHAENGMVDVLKKKCSHQG
CSTRASSGVAGTKKAEFCARHAENGMVDVLKKKCSHQGCSTQPSYGVAGT
KKADFCARHAENGMVDVLNKRCSHQGCSTRASYGVAGMKKAEFCAQHAIN
GMVDVRNKRCSHQGCFTRASYGVAGTVKIEFCARHAENGMVDVINKRCSH
QGCSRHPSYGVAGTKKAEFCARHAENGMVNARTSNSINRGGHLKKPSSPS
QVKLEVSSEDLDGHCGCCGTVEKVRKRHSALTFPSHSGSSTSRESRSAKR
ARVSVRLSMTEQLAYGTPSAGISSLDNEANIKTEVAASRRSVPGTVLQQQ
*
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mRNA from alignment at H-paniculata_contig13414:4410..6375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13414.2132.1 ID=mRNA_H-paniculata_contig13414.2132.1|Name=mRNA_H-paniculata_contig13414.2132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1966bp|location=Sequence derived from alignment at H-paniculata_contig13414:4410..6375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGCGATTCAGGAAGGGATCACGACAACGTTTTGGTTGGGAAGCGTC
AAGTGTTATCGCTACGACGGTTCAACCTTTAGAGGAGGACAGGGTGCGGC
AGGCAAGGGTGGTGCTCGAGTCACGCTCGTAGGTCCTGTCCTGAGTAGCA
TCTGAGAGGTGAAGTGGTGTGTTTAGTATTGGAAGACCATGCTACGCCAA
CGGAAGAGGTGTTTTCACCAGGGCTGCCCTAAGCAGCCGTCGTATGGAGT
GGAAGGCACGAAGAAGGCAGAGTTCTGTGCGCGGCATGCCGAAAATGGGA
TGGTGGACGTGCTGAAGAAGAAGTGCTCCCACCAGGGCTGCTCTACGCGT
GCGTCAAGTGGGGTGGCGGGCACGAAAAAGGCAGAGTTCTGTGCGCGGCA
CGCCGAAAACGGGATGGTGGACGTGCTGAAGAAGAAGTGCTCCCACCAGG
GCTGCTCTACACAGCCGTCGTATGGAGTGGCGGGCACGAAAAAGGCAGAC
TTCTGTGCGCGGCATGCCGAAAACGGGATGGTGGACGTGCTGAACAAGAG
ATGCTCCCATCAGGGTTGCTCTACGCGTGCGTCATATGGGGTGGCGGGCA
TGAAAAAGGCAGAGTTCTGTGCGCAGCATGCCATTAACGGGATGGTGGAC
GTGCGGAACAAGAGGTGCTCTCACCAGGGCTGCTTTACACGTGCGTCATA
CGGGGTGGCGGGCACCGTAAAAATAGAGTTCTGTGCGCGGCATGCCGAAA
ATGGGATGGTGGATGTGATTAACAAGAGGTGCTCCCACCAGGGCTGCTCT
AGACATCCGTCGTATGGGGTGGCAGGCACGAAAAAGGCAGAGTTCTGTGC
GCGGCACGCTGAAAACGGGATGGTTAACGCGAGAACGAGCAACAGCATTA
ACCGCGGCGGTCATTTGAAGAAACCGTCGAGTCCCTCACAGGTGAAGCTA
GAAGTGTCTTCAGAGGATCTCGATGGACATTGCGGATGCTGCGGGACTGT
GGAGAAAGTCAGAAAGCGCCACTCCGCACTAACGTTTCCATCACACAGTG
GTAGCTCTACCTCGCGCGAGAGTCGTAGCGCAAAGCGGGCCCGCGTGTCC
GTTAGATTGAGTATGACAGAGCAGCTAGCCTACGGCACGCCTTCGGCAGG
CATCTCATCTCTCGACAACGAGGCCAATATTAAGACGGAGGTGGCTGCAT
CGCGGCGTTCCGTGCCGGGCACCGTTTTACAGCAGCAATGACCGCTGTAT
GTCATGGAGGCATCAAGTCTAACGCGTGTGTCGACGCACGAGAGATTGGT
TGGTAATGATGATGTTGTCATTGTTAGTATTCAGACACAGTAGTAGAGCA
ATGGCTACACCCGTGTAGTATGTGCTCCTCCTTAGCCCACGGATTCGCTG
TGTCCCTGGTGGGGGCTCGCGCAGGAGACTGTACGGCCCGCATGAATATT
CGGTGTCCAGGAGTTGCTCAAGTACAGGTTTGCAAAATTGTTCCAGCACA
ATGATGACAACCGTGGCCCCCATCTTATTACTAAATAATAGCTGGATAGC
AAGGTGTCAAGCCAACGGTTGATTGTATGTTTCTTACGTGCATATCTGGC
AGAAAGTTTTACGTTGCTCTTACGGTGTTAACCCTGTCGTGGTATTGAAA
TCGACGAAGTGGCAATATGTACACGTTTTAATTGAGGGTAATTCGGAGCA
CACACCAATGGCTGGTTGCACCTTGCGTATTTTTCTAGGGGGTATGATTG
ATTGTCAGGTATTAGACAAGTTTTTCCCAGCTGGACGTGGTCAGTAACTC
ATGTATCTAAGCGGGATCTATGTAATGGTAGCATGGAGCACATATGTTTC
TCCGGCTGGTGGACAGGGCAGCGGTATTTTTTACACCGTCGAGAAGGATT
CCGAACATATTTGTTTTACTCTGGAGGTAAAGGACGCATTCAAGGGACGC
TTCAGGCATCTCGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig13414:4410..6375+

>mRNA_H-paniculata_contig13414.2132.1 ID=mRNA_H-paniculata_contig13414.2132.1|Name=mRNA_H-paniculata_contig13414.2132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2106bp|location=Sequence derived from alignment at H-paniculata_contig13414:4410..6375+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACGCCAACGGAAGAGGTGTTTTCACCAGGGCTGCCCTAAGCAGCC
GTCGTATGGAGTGGAAGGCACGAAGAAGGCAGAGTTCTGTGCGCGGCATG
CCGAAAATGGGATGGTGGACGTGCTGAAGAAGAAGTGCTCCCACCAGGGC
TGCTCTACGCGTGCGTCAAGTGGGGTGGCGGGCACGAAAAAGGCAGAGTT
CTGTGCGCGGCACGCCGAAAACGGGATGGTGGACGTGCTGAAGAAGAAGT
GCTCCCACCAGGGCTGCTCTACACAGCCGTCGTATGGAGTGGCGGGCACG
AAAAAGGCAGACTTCTGTGCGCGGCATGCCGAAAACGGGATGGTGGACGT
GCTGAACAAGAGATGCTCCCATCAGGGTTGCTCTACGCGTGCGTCATATG
GGGTGGCGGGCATGAAAAAGGCAGAGTTCTGTGCGCAGCATGCCATTAAC
GGGATGGTGGACGTGCGGAACAAGAGGTGCTCTCACCAGGGCTGCTTTAC
ACGTGCGTCATACGGGGTGGCGGGCACCGTAAAAATAGAGTTCTGTGCGC
GGCATGCCGAAAATGGGATGGTGGATGTGATTAACAAGAGGTGCTCCCAC
CAGGGCTGCTCTAGACATCCGTCGTATGGGGTGGCAGGCACGAAAAAGGC
AGAGTTCTGTGCGCGGCACGCTGAAAACGGGATGGTTAACGCGAGAACGA
GCAACAGCATTAACCGCGGCGGTCATTTGAAGAAACCGTCGAGTCCCTCA
CAGGTGAAGCTAGAAGTGTCTTCAGAGGATCTCGATGGACATTGCGGATG
CTGCGGGACTGTGGAGAAAGTCAGAAAGCGCCACTCCGCACTAACGTTTC
CATCACACAGTGGTAGCTCTACCTCGCGCGAGAGTCGTAGCGCAAAGCGG
GCCCGCGTGTCCGTTAGATTGAGTATGACAGAGCAGCTAGCCTACGGCAC
GCCTTCGGCAGGCATCTCATCTCTCGACAACGAGGCCAATATTAAGACGG
AGGTGGCTGCATCGCGGCGTTCCGTGCCGGGCACCGTTTTACAGCAGCAA
TGAATGCTACGCCAACGGAAGAGGTGTTTTCACCAGGGCTGCCCTAAGCA
GCCGTCGTATGGAGTGGAAGGCACGAAGAAGGCAGAGTTCTGTGCGCGGC
ATGCCGAAAATGGGATGGTGGACGTGCTGAAGAAGAAGTGCTCCCACCAG
GGCTGCTCTACGCGTGCGTCAAGTGGGGTGGCGGGCACGAAAAAGGCAGA
GTTCTGTGCGCGGCACGCCGAAAACGGGATGGTGGACGTGCTGAAGAAGA
AGTGCTCCCACCAGGGCTGCTCTACACAGCCGTCGTATGGAGTGGCGGGC
ACGAAAAAGGCAGACTTCTGTGCGCGGCATGCCGAAAACGGGATGGTGGA
CGTGCTGAACAAGAGATGCTCCCATCAGGGTTGCTCTACGCGTGCGTCAT
ATGGGGTGGCGGGCATGAAAAAGGCAGAGTTCTGTGCGCAGCATGCCATT
AACGGGATGGTGGACGTGCGGAACAAGAGGTGCTCTCACCAGGGCTGCTT
TACACGTGCGTCATACGGGGTGGCGGGCACCGTAAAAATAGAGTTCTGTG
CGCGGCATGCCGAAAATGGGATGGTGGATGTGATTAACAAGAGGTGCTCC
CACCAGGGCTGCTCTAGACATCCGTCGTATGGGGTGGCAGGCACGAAAAA
GGCAGAGTTCTGTGCGCGGCACGCTGAAAACGGGATGGTTAACGCGAGAA
CGAGCAACAGCATTAACCGCGGCGGTCATTTGAAGAAACCGTCGAGTCCC
TCACAGGTGAAGCTAGAAGTGTCTTCAGAGGATCTCGATGGACATTGCGG
ATGCTGCGGGACTGTGGAGAAAGTCAGAAAGCGCCACTCCGCACTAACGT
TTCCATCACACAGTGGTAGCTCTACCTCGCGCGAGAGTCGTAGCGCAAAG
CGGGCCCGCGTGTCCGTTAGATTGAGTATGACAGAGCAGCTAGCCTACGG
CACGCCTTCGGCAGGCATCTCATCTCTCGACAACGAGGCCAATATTAAGA
CGGAGGTGGCTGCATCGCGGCGTTCCGTGCCGGGCACCGTTTTACAGCAG
CAATGA
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