prot_H-paniculata_contig13350.2095.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13350.2095.1
Unique Nameprot_H-paniculata_contig13350.2095.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length434
Homology
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BLAST of mRNA_H-paniculata_contig13350.2095.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.240e-28
Identity = 97/202 (48.02%), Postives = 105/202 (51.98%), Query Frame = 0 
Query:   75 RGSRRAPVNAGEWKGQRGMQRNCMAEKSDPDFVRNYDNYRPSFAPYRQLADPNGGGFTTGGGGH-------VQGQPQQPHPPPRLLHQQQVCVCTRESALRCWLAMNVAGQPVHAMMPGIPGIQGYVRSPMAGQQAGMMVMQSPQPWQQVHIDPQTQAMAAAAG------GGLPPVAYGAGPTTGPHGLYT-HSYVDPAQAA 262
            RGSRR  VNAGEWKGQRGMQRN MAEKSDPDFVRNYD+YRPSFAPYRQLADP GGG    GGG             QQP P PRLL Q          A+      +  GQ  HAMM    G+QG+    + GQ  G M               + QAM           GG P V YGA      H +Y    YVDPAQAA
Sbjct:  574 RGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDHYRPSFAPYRQLADPGGGG----GGGRGXXXXXXXXXXXQQPQPSPRLLQQ-------HPHAMMSAAVQHAHGQAAHAMMAIPAGMQGHQ---LRGQMPGQM---------------EAQAMXXXXXXXXXXXGGAPSV-YGA--AVPGHAMYAAQGYVDPAQAA 743
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BLAST of mRNA_H-paniculata_contig13350.2095.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.450e-20
Identity = 64/125 (51.20%), Postives = 69/125 (55.20%), Query Frame = 0 
Query:   78 RRAPVNAGEWKGQRGMQRNCMAEKSDPDFVRNYDNYRPSFAPYRQLADPNGGGFTTGGGGHVQGQPQQPHPPPRLLHQQQVCVCTRESALRCWLAMNVAGQPVHAMMPGIPGIQGY-VRSPMAGQ 201
            RR  VNAGEWKGQRGMQRN MAEKSDPDFVRNYDNYRPSFAPYRQLADP G     GG G                            A+      +  GQ  HAMM    G+QG+ +R  M GQ
Sbjct:  694 RRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGG----RGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 814
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13350.2095.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC01_9PHAE1.240e-2848.02SUZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LM72_ECTSI2.450e-2051.20R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13350contigH-paniculata_contig13350:4801..6986 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13350.2095.1mRNA_H-paniculata_contig13350.2095.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13350 4801..6986 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13350.2095.1 ID=prot_H-paniculata_contig13350.2095.1|Name=mRNA_H-paniculata_contig13350.2095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=434bp
GFGRGRGKPLPGRGDGERGAAVAVGGGGGTRGPGVDGPDRGNGMVSGDFR
RHDGAGRGGGGGRGGGGGGGGGGGRGSRRAPVNAGEWKGQRGMQRNCMAE
KSDPDFVRNYDNYRPSFAPYRQLADPNGGGFTTGGGGHVQGQPQQPHPPP
RLLHQQQVCVCTRESALRCWLAMNVAGQPVHAMMPGIPGIQGYVRSPMAG
QQAGMMVMQSPQPWQQVHIDPQTQAMAAAAGGGLPPVAYGAGPTTGPHGL
YTHSYVDPAQAAAAASAGGSPGGMGVIVPGAGVRGVPMAGGPGSVMAHQL
QQQQQSSHSRGHQGQQLVQQHPQPHAHHTQQQQQQQQAMTAYMAQGQQQG
QAQQSAGQAQQQQGMAGVVQSSPQQQHAAGQQAGQLLRQQQQQQQQQQQM
QTGGAAAAGIPMSGGYMTAQDYYGAQAAQQHAW*
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