mRNA_H-paniculata_contig13350.2095.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13350.2095.1
Unique NamemRNA_H-paniculata_contig13350.2095.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13350.2095.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.240e-28
Identity = 97/202 (48.02%), Postives = 105/202 (51.98%), Query Frame = 1 
Query:  223 RGSRRAPVNAGEWKGQRGMQRNCMAEKSDPDFVRNYDNYRPSFAPYRQLADPNGGGFTTGGGGH-------VQGQPQQPHPPPRLLHQQQVCVCTRESALRCWLAMNVAGQPVHAMMPGIPGIQGYVRSPMAGQQAGMMVMQSPQPWQQVHIDPQTQAMAAAAG------GGLPPVAYGAGPTTGPHGLYT-HSYVDPAQAA 786
            RGSRR  VNAGEWKGQRGMQRN MAEKSDPDFVRNYD+YRPSFAPYRQLADP GGG    GGG             QQP P PRLL Q          A+      +  GQ  HAMM    G+QG+    + GQ  G M               + QAM           GG P V YGA      H +Y    YVDPAQAA
Sbjct:  574 RGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDHYRPSFAPYRQLADPGGGG----GGGRGXXXXXXXXXXXQQPQPSPRLLQQ-------HPHAMMSAAVQHAHGQAAHAMMAIPAGMQGHQ---LRGQMPGQM---------------EAQAMXXXXXXXXXXXGGAPSV-YGA--AVPGHAMYAAQGYVDPAQAA 743
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BLAST of mRNA_H-paniculata_contig13350.2095.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.450e-20
Identity = 64/125 (51.20%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:  232 RRAPVNAGEWKGQRGMQRNCMAEKSDPDFVRNYDNYRPSFAPYRQLADPNGGGFTTGGGGHVQGQPQQPHPPPRLLHQQQVCVCTRESALRCWLAMNVAGQPVHAMMPGIPGIQGY-VRSPMAGQ 603
            RR  VNAGEWKGQRGMQRN MAEKSDPDFVRNYDNYRPSFAPYRQLADP G     GG G                            A+      +  GQ  HAMM    G+QG+ +R  M GQ
Sbjct:  694 RRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGG----RGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 814
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13350.2095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC01_9PHAE1.240e-2848.02SUZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LM72_ECTSI2.450e-2051.20R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13350contigH-paniculata_contig13350:4801..6986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002725.1
Exons3
Model size1302
Cds size1302
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13350.2095.1prot_H-paniculata_contig13350.2095.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13350 4801..6986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929058.2225678-CDS-H-paniculata_contig13350:4800..53131622929058.2225678-CDS-H-paniculata_contig13350:4800..5313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13350 4801..5313 +
1691480715.1333978-CDS-H-paniculata_contig13350:4800..53131691480715.1333978-CDS-H-paniculata_contig13350:4800..5313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13350 4801..5313 +
1622929058.2347698-CDS-H-paniculata_contig13350:5698..57881622929058.2347698-CDS-H-paniculata_contig13350:5698..5788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13350 5699..5788 +
1691480715.143766-CDS-H-paniculata_contig13350:5698..57881691480715.143766-CDS-H-paniculata_contig13350:5698..5788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13350 5699..5788 +
1622929058.2515578-CDS-H-paniculata_contig13350:6287..69861622929058.2515578-CDS-H-paniculata_contig13350:6287..6986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13350 6288..6986 +
1691480715.1555214-CDS-H-paniculata_contig13350:6287..69861691480715.1555214-CDS-H-paniculata_contig13350:6287..6986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13350 6288..6986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13350.2095.1

>prot_H-paniculata_contig13350.2095.1 ID=prot_H-paniculata_contig13350.2095.1|Name=mRNA_H-paniculata_contig13350.2095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=434bp
GFGRGRGKPLPGRGDGERGAAVAVGGGGGTRGPGVDGPDRGNGMVSGDFR
RHDGAGRGGGGGRGGGGGGGGGGGRGSRRAPVNAGEWKGQRGMQRNCMAE
KSDPDFVRNYDNYRPSFAPYRQLADPNGGGFTTGGGGHVQGQPQQPHPPP
RLLHQQQVCVCTRESALRCWLAMNVAGQPVHAMMPGIPGIQGYVRSPMAG
QQAGMMVMQSPQPWQQVHIDPQTQAMAAAAGGGLPPVAYGAGPTTGPHGL
YTHSYVDPAQAAAAASAGGSPGGMGVIVPGAGVRGVPMAGGPGSVMAHQL
QQQQQSSHSRGHQGQQLVQQHPQPHAHHTQQQQQQQQAMTAYMAQGQQQG
QAQQSAGQAQQQQGMAGVVQSSPQQQHAAGQQAGQLLRQQQQQQQQQQQM
QTGGAAAAGIPMSGGYMTAQDYYGAQAAQQHAW*
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mRNA from alignment at H-paniculata_contig13350:4801..6986+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13350.2095.1 ID=mRNA_H-paniculata_contig13350.2095.1|Name=mRNA_H-paniculata_contig13350.2095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2186bp|location=Sequence derived from alignment at H-paniculata_contig13350:4801..6986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTTCGGTCGCGGCCGCGGCAAGCCTCTCCCGGGGAGGGGCGACGGGGA
GCGGGGCGCCGCGGTCGCCGTGGGAGGAGGAGGAGGAACCCGAGGCCCCG
GCGTTGATGGCCCTGATCGGGGCAATGGTATGGTGTCGGGAGATTTTAGG
CGTCACGATGGAGCCGGGAGAGGAGGCGGTGGAGGGAGAGGCGGCGGCGG
TGGTGGTGGTGGTGGTGGAGGGCGGGGTAGTCGGAGAGCTCCAGTTAACG
CGGGGGAATGGAAAGGGCAGCGAGGAATGCAGCGCAACTGCATGGCGGAG
AAGTCGGACCCGGATTTTGTGCGTAATTACGACAACTATCGGCCAAGTTT
CGCGCCGTATAGGCAGCTAGCAGACCCGAACGGGGGCGGTTTCACCACCG
GCGGTGGTGGACATGTACAGGGACAGCCGCAGCAGCCTCATCCGCCTCCG
CGATTGCTCCACCAGCAGCAGGTGTGCGTGTGTACGCGTGAGAGTGCTTT
ACGGTGTTGGTTGGTATCGGCGTTTTAAGGTTCGTAGTTGTTTATTGTTG
CTATATTTCCCTCGTGTCCGACGTCAAAACCGTGTTGGGTATTTTGTCCC
ATCGTCGTTTATCTGTTCGCACAATGTGCAGAAGCATCTGGTCTGGTACT
TTGCCATGGGTATTTTTTTTGTCCAAAGCACTTCATCGTTGGTACGGTCG
AATCTGTCAAACCGTTTCGGGCAGATTAATTTTTTCTAGACACAGAGATT
TTGGTGTTTAATCGTAATCGCGAACTTTTGTTTTTTTTTGTACACATTCG
CGAGTATTTTTGTTTGTCGTGTACGTGTGGTCCCTTTTATTTCTTCCTAT
ATCTTGGCTCTCTTTTTTTTCTCCAACTTCTGTTGTGGGGGGAAACAGGC
GATGAACGTCGCCGGGCAGCCGGTTCACGCTATGATGCCAGGAATACCCG
GGATCCAGGGGTATGTCCGCAGTCCAATGGCAGGACAGGTGTGTCTGTGT
TGTGTATATGTGTGTAGGGTGGCTTGCGAGAAATTGAACCGCAGCGTAAT
TCCTGTCCGCCAAGCCAAGCTGCCGCGTGAGCCTAATGGAGACCGACTCT
CCATCCTCCCTCCCTCCCTCCCTCCTTCCTCTTGTTGCCCTGGAGGTCAC
TACCCACGAAATGTGAAACGCTTTCATCCCCTTCCATCCGCCAAACCTTT
GCTTTTCTTTCGTTGGATAATATCCGTGCTTATCGGATTCTTGAAAAGAC
CTTCATCGACCACTACCACCACTACGACAGCCTCTTTTTCTAATGCAGTT
ATCTGTGCTCCTCGTCATGGTCGCTTTCTCTGTGTTCGCCCGTTTCAACA
AAACAGCCGTCTAAATACATATACGCACATAGTCACTCATATTTTCATGT
ATCAACAACGAACAAACAAGAAACGCGATGCGCTGCTGCTCTGCTGATTC
TGTCGCTGCTACTGCTGCAACACCAAAAAAGCAACAGCAAGCGGGAATGA
TGGTCATGCAATCCCCTCAGCCATGGCAGCAAGTCCACATAGATCCCCAA
ACCCAGGCCATGGCAGCGGCTGCCGGAGGCGGACTTCCTCCGGTAGCCTA
CGGTGCGGGCCCCACAACCGGTCCCCATGGGCTATACACCCACAGTTACG
TGGATCCGGCTCAAGCGGCGGCAGCTGCCTCCGCCGGAGGCTCCCCCGGC
GGGATGGGGGTAATTGTTCCGGGGGCAGGGGTACGTGGAGTTCCTATGGC
GGGCGGCCCAGGGTCAGTCATGGCTCACCAGTTGCAGCAGCAGCAGCAGT
CGTCGCACTCGAGGGGACACCAAGGGCAGCAACTGGTTCAGCAGCATCCC
CAGCCTCATGCCCACCACACCCAGCAGCAGCAGCAGCAGCAGCAAGCGAT
GACGGCTTACATGGCTCAGGGACAGCAGCAAGGCCAAGCGCAGCAGTCAG
CGGGTCAAGCGCAGCAGCAACAGGGCATGGCTGGCGTTGTTCAGTCTTCG
CCGCAGCAGCAGCATGCGGCCGGGCAACAGGCTGGACAACTGTTGCGCCA
GCAGCAGCAGCAGCAGCAACAGCAGCAGCAAATGCAAACGGGCGGCGCAG
CGGCCGCCGGTATACCCATGTCTGGCGGTTACATGACAGCACAAGACTAT
TACGGTGCTCAGGCGGCTCAGCAGCATGCCTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13350:4801..6986+

>mRNA_H-paniculata_contig13350.2095.1 ID=mRNA_H-paniculata_contig13350.2095.1|Name=mRNA_H-paniculata_contig13350.2095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2604bp|location=Sequence derived from alignment at H-paniculata_contig13350:4801..6986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTTCGGTCGCGGCCGCGGCAAGCCTCTCCCGGGGAGGGGCGACGGGGA
GCGGGGCGCCGCGGTCGCCGTGGGAGGAGGAGGAGGAACCCGAGGCCCCG
GCGTTGATGGCCCTGATCGGGGCAATGGTATGGTGTCGGGAGATTTTAGG
CGTCACGATGGAGCCGGGAGAGGAGGCGGTGGAGGGAGAGGCGGCGGCGG
TGGTGGTGGTGGTGGTGGAGGGCGGGGTAGTCGGAGAGCTCCAGTTAACG
CGGGGGAATGGAAAGGGCAGCGAGGAATGCAGCGCAACTGCATGGCGGAG
AAGTCGGACCCGGATTTTGTGCGTAATTACGACAACTATCGGCCAAGTTT
CGCGCCGTATAGGCAGCTAGCAGACCCGAACGGGGGCGGTTTCACCACCG
GCGGTGGTGGACATGTACAGGGACAGCCGCAGCAGCCTCATCCGCCTCCG
CGATTGCTCCACCAGCAGCAGGTGTGCGTGTGTACGCGTGAGAGTGCTTT
ACGGTGTTGGTTGGGGTTCGGTCGCGGCCGCGGCAAGCCTCTCCCGGGGA
GGGGCGACGGGGAGCGGGGCGCCGCGGTCGCCGTGGGAGGAGGAGGAGGA
ACCCGAGGCCCCGGCGTTGATGGCCCTGATCGGGGCAATGGTATGGTGTC
GGGAGATTTTAGGCGTCACGATGGAGCCGGGAGAGGAGGCGGTGGAGGGA
GAGGCGGCGGCGGTGGTGGTGGTGGTGGTGGAGGGCGGGGTAGTCGGAGA
GCTCCAGTTAACGCGGGGGAATGGAAAGGGCAGCGAGGAATGCAGCGCAA
CTGCATGGCGGAGAAGTCGGACCCGGATTTTGTGCGTAATTACGACAACT
ATCGGCCAAGTTTCGCGCCGTATAGGCAGCTAGCAGACCCGAACGGGGGC
GGTTTCACCACCGGCGGTGGTGGACATGTACAGGGACAGCCGCAGCAGCC
TCATCCGCCTCCGCGATTGCTCCACCAGCAGCAGGTGTGCGTGTGTACGC
GTGAGAGTGCTTTACGGTGTTGGTTGGCGATGAACGTCGCCGGGCAGCCG
GTTCACGCTATGATGCCAGGAATACCCGGGATCCAGGGGTATGTCCGCAG
TCCAATGGCAGGACAGGCGATGAACGTCGCCGGGCAGCCGGTTCACGCTA
TGATGCCAGGAATACCCGGGATCCAGGGGTATGTCCGCAGTCCAATGGCA
GGACAGCAAGCGGGAATGATGGTCATGCAATCCCCTCAGCCATGGCAGCA
AGTCCACATAGATCCCCAAACCCAGGCCATGGCAGCGGCTGCCGGAGGCG
GACTTCCTCCGGTAGCCTACGGTGCGGGCCCCACAACCGGTCCCCATGGG
CTATACACCCACAGTTACGTGGATCCGGCTCAAGCGGCGGCAGCTGCCTC
CGCCGGAGGCTCCCCCGGCGGGATGGGGGTAATTGTTCCGGGGGCAGGGG
TACGTGGAGTTCCTATGGCGGGCGGCCCAGGGTCAGTCATGGCTCACCAG
TTGCAGCAGCAGCAGCAGTCGTCGCACTCGAGGGGACACCAAGGGCAGCA
ACTGGTTCAGCAGCATCCCCAGCCTCATGCCCACCACACCCAGCAGCAGC
AGCAGCAGCAGCAAGCGATGACGGCTTACATGGCTCAGGGACAGCAGCAA
GGCCAAGCGCAGCAGTCAGCGGGTCAAGCGCAGCAGCAACAGGGCATGGC
TGGCGTTGTTCAGTCTTCGCCGCAGCAGCAGCATGCGGCCGGGCAACAGG
CTGGACAACTGTTGCGCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAA
ATGCAAACGGGCGGCGCAGCGGCCGCCGGTATACCCATGTCTGGCGGTTA
CATGACAGCACAAGACTATTACGGTGCTCAGGCGGCTCAGCAGCATGCCT
GGTGACAAGCGGGAATGATGGTCATGCAATCCCCTCAGCCATGGCAGCAA
GTCCACATAGATCCCCAAACCCAGGCCATGGCAGCGGCTGCCGGAGGCGG
ACTTCCTCCGGTAGCCTACGGTGCGGGCCCCACAACCGGTCCCCATGGGC
TATACACCCACAGTTACGTGGATCCGGCTCAAGCGGCGGCAGCTGCCTCC
GCCGGAGGCTCCCCCGGCGGGATGGGGGTAATTGTTCCGGGGGCAGGGGT
ACGTGGAGTTCCTATGGCGGGCGGCCCAGGGTCAGTCATGGCTCACCAGT
TGCAGCAGCAGCAGCAGTCGTCGCACTCGAGGGGACACCAAGGGCAGCAA
CTGGTTCAGCAGCATCCCCAGCCTCATGCCCACCACACCCAGCAGCAGCA
GCAGCAGCAGCAAGCGATGACGGCTTACATGGCTCAGGGACAGCAGCAAG
GCCAAGCGCAGCAGTCAGCGGGTCAAGCGCAGCAGCAACAGGGCATGGCT
GGCGTTGTTCAGTCTTCGCCGCAGCAGCAGCATGCGGCCGGGCAACAGGC
TGGACAACTGTTGCGCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAAA
TGCAAACGGGCGGCGCAGCGGCCGCCGGTATACCCATGTCTGGCGGTTAC
ATGACAGCACAAGACTATTACGGTGCTCAGGCGGCTCAGCAGCATGCCTG
GTGA
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