mRNA_H-paniculata_contig13334.2088.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13334.2088.1
Unique NamemRNA_H-paniculata_contig13334.2088.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: A0A6H5JAW2_9PHAE (RCK N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW2_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.260e-33
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    4 DSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQV 264
            D+L+FLA+T AVVP C ++ ISPVLGFL  G +LGPSG SVIK++ EL+TLGELGISFLLFEQGLELSLDRLKALSKYAFGLGT QV
Sbjct:  176 DALMFLAATVAVVPACKKLNISPVLGFLATGAILGPSGISVIKNLNELDTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTAQV 262
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: A0A835ZF36_9STRA (K(+) efflux antiporter 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF36_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.840e-29
Identity = 62/87 (71.26%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    4 DSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQV 264
            D+L FLA+T A+VP+  +  +SPVLGFL AG +LGP G   IKD+ +LN LGELGI+FLLFEQGLELSLDRLKAL KYAFGLGTLQV
Sbjct:  116 DALKFLAATVAIVPIAKRFNLSPVLGFLAAGLILGPKGVGAIKDLRDLNALGELGITFLLFEQGLELSLDRLKALGKYAFGLGTLQV 202
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: A0A835ZEK7_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.830e-29
Identity = 62/87 (71.26%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    4 DSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQV 264
            DSL+FLA+T  +VPL  ++ +SPVLGFL AG  LGP GF +I+++ +LN LGELGI+FLLFEQGLELSLDRLKAL KYAFGLGTLQV
Sbjct:   17 DSLIFLAATVFLVPLSKKLNVSPVLGFLGAGLALGPHGFKLIRELRDLNALGELGITFLLFEQGLELSLDRLKALGKYAFGLGTLQV 103
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: D8LEI4_ECTSI (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI4_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 6.020e-26
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   70 PVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQV 264
            PVLGFL  G +LGPSG SVIKD+ EL+TLGELGISFLLFEQGLELSLDRLKALSKYAFGLGT QV
Sbjct:  409 PVLGFLATGAILGPSGISVIKDLNELDTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTAQV 473
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: A0A7R9U8T7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8T7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.390e-24
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 DSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQV 264
            D L+FLA+T  VVPL   + +S VLGFL AG LLGP+G  V KD+ +L +L E+GI FLLFEQGLEL+LDRL+ L+KYAFGLG LQ+
Sbjct:   76 DGLIFLAATVIVVPLTKSVKVSSVLGFLFAGFLLGPAGIGVFKDLNDLESLSEIGILFLLFEQGLELTLDRLRNLAKYAFGLGFLQM 162
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: A0A7S1UH40_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH40_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.170e-23
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 DSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQV 264
            D LVFLA+T  V+PL   + IS VLGFL  G +LGP GF + +D+ +L+ LGE+GI FLLFEQGLEL+L+RL++L+K+AFGLG LQV
Sbjct:  100 DGLVFLATTVLVIPLTKYLRISNVLGFLAMGFVLGPRGFGIFRDLQDLDVLGEIGILFLLFEQGLELTLERLRSLAKFAFGLGLLQV 186
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: A0A7S2UWU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWU9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.470e-23
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    4 DSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQV 264
            D LVF+A+  AVVP+   + ISP+LGFL AG  LGP G +VI DI +L  L ++GI FLLFEQGLEL++ RLK+L+K+AFGLG LQV
Sbjct:  161 DGLVFMATAVAVVPIFTALDISPILGFLGAGLALGPVGLNVIADIHDLEELADVGILFLLFEQGLELTIPRLKSLAKFAFGLGLLQV 247
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: A0A383WCY8_TETOB (RCK N-terminal domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WCY8_TETOB)

HSP 1 Score: 102 bits (254), Expect = 2.210e-23
Identity = 56/87 (64.37%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    4 DSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQV 264
            D L FLA+T AVVP C  + +SPVLGFL AG  L  +G  ++KD+ ++ TL ELG+ FLL+EQGLELSLDRLKALSKYAFG+G+LQV
Sbjct:  129 DFLTFLATTVAVVPTCKFLKVSPVLGFLAAGVALEQAG--MLKDLKDMETLSELGVLFLLYEQGLELSLDRLKALSKYAFGMGSLQV 213
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: M2VZM4_GALSU (Monovalent cation:H+ antiporter-2, CPA2 family isoform 2 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZM4_GALSU)

HSP 1 Score: 100 bits (248), Expect = 1.460e-22
Identity = 49/91 (53.85%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    4 DSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQVCENG 276
            D+L  LA+T A+VP+  ++ +SPVLGFL++G +LGP GF ++KD+ ++  L + G+ FLLFE GLELS+DRL+ L KYAFGLG+LQ+   G
Sbjct:   97 DTLELLAATVAIVPVFKRINLSPVLGFLLSGVILGPHGFRLVKDVEDIKHLADFGVLFLLFEMGLELSIDRLRKLRKYAFGLGSLQMLITG 187
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BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Match: A0A7S0ZLB0_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZLB0_9RHOD)

HSP 1 Score: 98.2 bits (243), Expect = 3.130e-22
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    4 DSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELNTLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQV 264
            D+L  L +T  V+P+  +  +SPVLGFL+AG +LGP G  ++KD+ ++  L + G+ FLLFE GLELSLDRL+ L KYAFGLGTLQV
Sbjct:  112 DTLEILIATVIVIPIFRRFALSPVLGFLLAGVVLGPHGLRIVKDVEDITELADFGVLFLLFEMGLELSLDRLRKLRKYAFGLGTLQV 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13334.2088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAW2_9PHAE2.260e-3378.16RCK N-terminal domain-containing protein n=1 Tax=E... [more]
A0A835ZF36_9STRA1.840e-2971.26K(+) efflux antiporter 3 n=1 Tax=Tribonema minus T... [more]
A0A835ZEK7_9STRA2.830e-2971.26Sodium/hydrogen exchanger family-domain-containing... [more]
D8LEI4_ECTSI6.020e-2686.15Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
A0A7R9U8T7_9STRA3.390e-2463.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UH40_9STRA1.170e-2360.92Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2UWU9_9STRA1.470e-2360.92Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A383WCY8_TETOB2.210e-2364.37RCK N-terminal domain-containing protein n=2 Tax=T... [more]
M2VZM4_GALSU1.460e-2253.85Monovalent cation:H+ antiporter-2, CPA2 family iso... [more]
A0A7S0ZLB0_9RHOD3.130e-2256.32Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13334contigH-paniculata_contig13334:1698..1973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4.1e-22
Seed eggNOG ortholog2880.D8LEI4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.2821708-CDS-H-paniculata_contig13334:1697..19731622929057.2821708-CDS-H-paniculata_contig13334:1697..1973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13334 1698..1973 +
1691480714.8972535-CDS-H-paniculata_contig13334:1697..19731691480714.8972535-CDS-H-paniculata_contig13334:1697..1973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13334 1698..1973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13334.2088.1prot_H-paniculata_contig13334.2088.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13334 1698..1973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13334.2088.1

>prot_H-paniculata_contig13334.2088.1 ID=prot_H-paniculata_contig13334.2088.1|Name=mRNA_H-paniculata_contig13334.2088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MDSLVFLASTCAVVPLCVQMGISPVLGFLVAGGLLGPSGFSVIKDIGELN
TLGELGISFLLFEQGLELSLDRLKALSKYAFGLGTLQVCENG
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mRNA from alignment at H-paniculata_contig13334:1698..1973+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13334.2088.1 ID=mRNA_H-paniculata_contig13334.2088.1|Name=mRNA_H-paniculata_contig13334.2088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig13334:1698..1973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTCTCTGGTGTTTTTGGCGTCGACGTGCGCCGTCGTACCGCTGTG
TGTACAGATGGGCATTAGCCCTGTTCTCGGCTTTCTAGTGGCGGGGGGAC
TGCTCGGGCCGTCTGGGTTCAGCGTCATCAAAGATATCGGCGAGCTGAAC
ACCCTGGGGGAGCTGGGCATTAGCTTTTTGCTGTTCGAGCAGGGCTTGGA
GTTGAGCTTGGACAGGCTCAAGGCGCTCAGCAAATACGCCTTTGGTCTGG
GCACGTTGCAGGTTTGTGAGAACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13334:1698..1973+

>mRNA_H-paniculata_contig13334.2088.1 ID=mRNA_H-paniculata_contig13334.2088.1|Name=mRNA_H-paniculata_contig13334.2088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig13334:1698..1973+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTCTCTGGTGTTTTTGGCGTCGACGTGCGCCGTCGTACCGCTGTG
TGTACAGATGGGCATTAGCCCTGTTCTCGGCTTTCTAGTGGCGGGGGGAC
TGCTCGGGCCGTCTGGGTTCAGCGTCATCAAAGATATCGGCGAGCTGAAC
ACCCTGGGGGAGCTGGGCATTAGCTTTTTGCTGTTCGAGCAGGGCTTGGA
GTTGAGCTTGGACAGGCTCAAGGCGCTCAGCAAATACGCCTTTGGTCTGG
GCACGTTGCAGGTTTGTGAGAACGGGATGGACTCTCTGGTGTTTTTGGCG
TCGACGTGCGCCGTCGTACCGCTGTGTGTACAGATGGGCATTAGCCCTGT
TCTCGGCTTTCTAGTGGCGGGGGGACTGCTCGGGCCGTCTGGGTTCAGCG
TCATCAAAGATATCGGCGAGCTGAACACCCTGGGGGAGCTGGGCATTAGC
TTTTTGCTGTTCGAGCAGGGCTTGGAGTTGAGCTTGGACAGGCTCAAGGC
GCTCAGCAAATACGCCTTTGGTCTGGGCACGTTGCAGGTTTGTGAGAACG
GG
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