mRNA_H-paniculata_contig13322.2078.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13322.2078.1
Unique NamemRNA_H-paniculata_contig13322.2078.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13322.2078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13322contigH-paniculata_contig13322:2329..5312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2528
Cds size1758
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13322.2078.1prot_H-paniculata_contig13322.2078.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13322 3039..5252 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.8252237-UTR-H-paniculata_contig13322:2328..30381622929055.8252237-UTR-H-paniculata_contig13322:2328..3038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13322 2329..3038 -
1691480714.377618-UTR-H-paniculata_contig13322:2328..30381691480714.377618-UTR-H-paniculata_contig13322:2328..3038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13322 2329..3038 -
1622929055.9453912-UTR-H-paniculata_contig13322:5252..53121622929055.9453912-UTR-H-paniculata_contig13322:5252..5312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13322 5253..5312 -
1691480714.4088044-UTR-H-paniculata_contig13322:5252..53121691480714.4088044-UTR-H-paniculata_contig13322:5252..5312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13322 5253..5312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.8689785-CDS-H-paniculata_contig13322:3038..41271622929055.8689785-CDS-H-paniculata_contig13322:3038..4127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13322 3039..4127 -
1691480714.3853087-CDS-H-paniculata_contig13322:3038..41271691480714.3853087-CDS-H-paniculata_contig13322:3038..4127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13322 3039..4127 -
1622929055.8857982-CDS-H-paniculata_contig13322:4583..52521622929055.8857982-CDS-H-paniculata_contig13322:4583..5252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13322 4584..5252 -
1691480714.3984663-CDS-H-paniculata_contig13322:4583..52521691480714.3984663-CDS-H-paniculata_contig13322:4583..5252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13322 4584..5252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13322.2078.1

>prot_H-paniculata_contig13322.2078.1 ID=prot_H-paniculata_contig13322.2078.1|Name=mRNA_H-paniculata_contig13322.2078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=586bp
MPGPQCARMGCLKQRSCGVAGREKSEFCAEHAQPEMVIVFNKKCRKEGCC
KTSLYGVAGSRKREFCAEHAMAGMSNTRSKKCLRGGCSKQPSYGVAGSRK
REFCSEHAMAEMINVKSKICLNESCSKQPSYGVAGSGAVEFCAQHARAGM
INIRRKECLHVGCSKQSSWGMPGSKKRQFCAEHAMSGMINIGDKKCLHGG
CSKQPSYGVAGSGKREFCAEHAKAEIINTRNKKCNHGGCSNVSSCGMVES
GEREFCAEHARAGMVDVRNKKCLHVGCSKHPSYGVEGSGKREFCAQHARP
EMVNVANKKCRLEGCYKIPSYGIAGSGKREFCAQHARAGMINVTSKRCLN
EGCSTISLYGVAGSRKCEFCAQHASAGLIYVKAKKCGINGCSRSGEHAVT
GVDKETLCRHHASEATGACSAAESFSKGNTSHDRLAGNGVGNAVSVGGSK
RGNIASGTRYGIGASGRSGSDRRGDGEWRGTTTPPLISRLPADSSDVVSG
EEIGVKLELDMDYPGGSIDVGIRKRTAPAAPIGLNVSDVKSSSSTSWSVR
RARRTWSVESGNPTGSSHLVSVETAASVKLEWPPL*
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mRNA from alignment at H-paniculata_contig13322:2329..5312-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13322.2078.1 ID=mRNA_H-paniculata_contig13322.2078.1|Name=mRNA_H-paniculata_contig13322.2078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2984bp|location=Sequence derived from alignment at H-paniculata_contig13322:2329..5312- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCGACTATTGACAAACGCCCTACTCCCCTCGACCGGTTATCGGGCGAC
GAAAAGGAGTATGCCTGGTCCACAATGCGCCCGCATGGGTTGCCTCAAGC
AGCGCTCGTGCGGCGTGGCGGGGAGGGAGAAGAGCGAGTTCTGCGCCGAG
CATGCACAGCCAGAAATGGTCATCGTGTTTAACAAGAAATGCCGCAAGGA
GGGCTGCTGTAAGACATCCCTGTATGGTGTGGCGGGGAGCAGAAAGAGGG
AGTTCTGTGCCGAGCATGCCATGGCAGGAATGAGCAACACCAGGAGCAAG
AAGTGTCTACGCGGGGGTTGCTCCAAACAGCCGTCGTATGGTGTGGCGGG
GAGCAGGAAGAGGGAGTTCTGTTCCGAGCATGCCATGGCAGAAATGATCA
ACGTGAAGAGCAAGATATGTCTCAACGAGAGTTGCTCCAAACAGCCATCG
TACGGTGTGGCGGGGAGCGGGGCGGTGGAGTTCTGTGCCCAACATGCCAG
AGCAGGAATGATCAACATTCGGCGTAAGGAGTGCCTCCACGTCGGTTGCT
CCAAGCAATCGTCGTGGGGTATGCCGGGGAGTAAAAAGAGGCAATTTTGC
GCCGAGCACGCGATGTCAGGAATGATAAACATCGGGGACAAGAAGTGTCT
ACACGGGGGCTGCTCCAAACAGCCGTCGTACGGTGTAGCTGGGAGCGGGA
AGAGGGAGTTCTGTGCCGAGCACGCCAAGGCAGAAATGATCAGCATCAGG
AGCGAGAAGTGTCTACACGGGAACTGCTCTACGATTCCGTCCTACGGTCT
GGCGGGGAGCAGGAAGAGGGAGTTCTGTTCCGAGCATGCCATGGCAGGAA
TGATCAACGTGAAGAGCAAGAAATGTCTCGACGAGGGTTGCTCCAAGCAG
CCGTCGTACGGTGTGGAGGGGAGCGGGGCGGTGGAGTTCTGTGCCCAACA
TGCCAGGGCAGGAATGATCAACATTCGGCGTAAGGAGTGCCTCCACGTCG
GTTGCTCCAAGCAATCGTCGTGGGGTATGCCGGGGAGTAAAAAGAGGCAG
TTTTGCGCTGAGCACGCTATGTCAGGAATGATAAACATCGGGGACAAGAA
GTGTCTACACGGGGGCTGCTCCAAACAGCCGTCGTACGGTGTAGCTGGGA
GCGGGAAGAGGGAGTTCTGTGCCGAGCACGCCAAGGCAGAAATTATCAAC
ACCAGGAACAAGAAGTGTAATCACGGGGGCTGCTCCAACGTTTCGTCGTG
CGGTATGGTCGAAAGCGGAGAAAGGGAATTCTGTGCCGAGCATGCCAGGG
CAGGAATGGTCGACGTGCGGAACAAGAAGTGTCTCCACGTCGGTTGCTCC
AAACACCCGTCGTACGGTGTGGAGGGGAGTGGGAAGAGAGAGTTCTGCGC
CCAGCATGCGAGGCCAGAAATGGTCAACGTGGCCAACAAGAAATGCCGCC
TGGAGGGCTGCTATAAGATACCGTCCTATGGTATAGCAGGGAGCGGGAAG
AGGGAGTTCTGTGCCCAGCATGCCAGGGCAGGAATGATCAACGTCACGAG
CAAGAGGTGCCTCAACGAGGGATGCTCCACAATTTCGTTGTATGGTGTGG
CGGGAAGCAGAAAATGCGAATTCTGTGCCCAGCATGCCAGTGCTGGGTTG
ATTTATGTCAAGGCCAAAAAATGTGGCATCAATGGATGTTCCAGAAGTGG
TGAACATGCAGTGACGGGTGTTGACAAGGAAACGTTGTGTCGCCACCATG
CCTCAGAGGCGACTGGCGCCTGCAGTGCAGCAGAGAGTTTTTCAAAGGGC
AACACCTCACACGATCGTCTGGCCGGGAATGGAGTGGGTAACGCTGTCAG
TGTAGGCGGAAGCAAACGTGGAAATATTGCCTCTGGCACTCGTTATGGCA
TCGGCGCCAGCGGACGGTCAGGCAGTGACCGTCGTGGCGATGGTGAGTGG
CGTGGAACAACGACGCCACCGCTAATATCTAGGCTGCCAGCCGATAGTTC
TGACGTGGTTTCTGGAGAGGAGATCGGCGTGAAGCTAGAGTTGGATATGG
ATTACCCTGGTGGTTCTATTGATGTTGGTATAAGAAAACGTACCGCACCC
GCTGCTCCAATCGGGTTGAACGTTTCTGACGTCAAGTCTAGTAGCAGCAC
TAGCTGGAGTGTAAGGCGGGCTCGTAGGACATGGTCAGTGGAATCAGGAA
ACCCTACTGGCAGCAGTCACTTGGTATCCGTGGAGACAGCAGCAAGCGTA
AAATTGGAGTGGCCTCCTCTTTAGAATATACCAGAGTCCTCGGATGTTGG
TGGCGTCAGCGTTGTTCGGCAAGTTAGTGGTTGCAACGATGATTGGATCA
TCACAGTCTTGCTGATTCTGTAGGCAGGTGGGTTGTTTTCGTCGAGTCGT
CCAACAAGTGCTGAGCACGTACGTTGAATTCGTGGTTAAGAATAGTACTT
TGTTTGGCCGATCGCACACATGGCAGCACGCACAAGCAGGTCTCTATTAT
TGCCTTTTGTTTGTATTGTTTTATCCGTATGAAGGTATTTTGCGCATTTA
TTTCAATATTTGAAGCCTGGCAATGCAGCAGATACGAGACGATCTTGTAA
GGAAATGGTCGTCGTACGCAGAACAAAACGCAAGCTGGAGATGATCGAGT
TTAGCAGATGGCGCAGGAGTTCATGTCCAGACACGCTCCCAACGTTCCTG
GGCAACAAGTGCACCAACGTTCGTGGAAGGAAAAGGAATTAGGTGTACAT
GCGTGCGAGAAGCGATAAAACGCGAGGAACAGACACATTACCCATGTCTG
TGCGCGAAAGGAAAATAGAAAGTGCTTGTACGAGCCTTGAGTGTCTAAGT
AAGCAAGATAAAATAGCATGTGCGGGTACTGCTGCCCGAAGAACAGCCGG
TGCTCGAAATTGAGAATCGATTTTTCCGTTGAAGATAAGTGAGCTTGGAA
GTGTGGCCGGCACTTGAAGGAATGTTTTTCCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig13322:2329..5312-

>mRNA_H-paniculata_contig13322.2078.1 ID=mRNA_H-paniculata_contig13322.2078.1|Name=mRNA_H-paniculata_contig13322.2078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3516bp|location=Sequence derived from alignment at H-paniculata_contig13322:2329..5312- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGGTCCACAATGCGCCCGCATGGGTTGCCTCAAGCAGCGCTCGTG
CGGCGTGGCGGGGAGGGAGAAGAGCGAGTTCTGCGCCGAGCATGCACAGC
CAGAAATGGTCATCGTGTTTAACAAGAAATGCCGCAAGGAGGGCTGCTGT
AAGACATCCCTGTATGGTGTGGCGGGGAGCAGAAAGAGGGAGTTCTGTGC
CGAGCATGCCATGGCAGGAATGAGCAACACCAGGAGCAAGAAGTGTCTAC
GCGGGGGTTGCTCCAAACAGCCGTCGTATGGTGTGGCGGGGAGCAGGAAG
AGGGAGTTCTGTTCCGAGCATGCCATGGCAGAAATGATCAACGTGAAGAG
CAAGATATGTCTCAACGAGAGTTGCTCCAAACAGCCATCGTACGGTGTGG
CGGGGAGCGGGGCGGTGGAGTTCTGTGCCCAACATGCCAGAGCAGGAATG
ATCAACATTCGGCGTAAGGAGTGCCTCCACGTCGGTTGCTCCAAGCAATC
GTCGTGGGGTATGCCGGGGAGTAAAAAGAGGCAATTTTGCGCCGAGCACG
CGATGTCAGGAATGATAAACATCGGGGACAAGAAGTGTCTACACGGGGGC
TGCTCCAAACAGCCGTCGTACGGTGTAGCTGGGAGCGGGAAGAGGGAGTT
CTGTGCCGAGCACGCCAAGATGCCTGGTCCACAATGCGCCCGCATGGGTT
GCCTCAAGCAGCGCTCGTGCGGCGTGGCGGGGAGGGAGAAGAGCGAGTTC
TGCGCCGAGCATGCACAGCCAGAAATGGTCATCGTGTTTAACAAGAAATG
CCGCAAGGAGGGCTGCTGTAAGACATCCCTGTATGGTGTGGCGGGGAGCA
GAAAGAGGGAGTTCTGTGCCGAGCATGCCATGGCAGGAATGAGCAACACC
AGGAGCAAGAAGTGTCTACGCGGGGGTTGCTCCAAACAGCCGTCGTATGG
TGTGGCGGGGAGCAGGAAGAGGGAGTTCTGTTCCGAGCATGCCATGGCAG
AAATGATCAACGTGAAGAGCAAGATATGTCTCAACGAGAGTTGCTCCAAA
CAGCCATCGTACGGTGTGGCGGGGAGCGGGGCGGTGGAGTTCTGTGCCCA
ACATGCCAGAGCAGGAATGATCAACATTCGGCGTAAGGAGTGCCTCCACG
TCGGTTGCTCCAAGCAATCGTCGTGGGGTATGCCGGGGAGTAAAAAGAGG
CAATTTTGCGCCGAGCACGCGATGTCAGGAATGATAAACATCGGGGACAA
GAAGTGTCTACACGGGGGCTGCTCCAAACAGCCGTCGTACGGTGTAGCTG
GGAGCGGGAAGAGGGAGTTCTGTGCCGAGCACGCCAAGGCAGAAATTATC
AACACCAGGAACAAGAAGTGTAATCACGGGGGCTGCTCCAACGTTTCGTC
GTGCGGTATGGTCGAAAGCGGAGAAAGGGAATTCTGTGCCGAGCATGCCA
GGGCAGGAATGGTCGACGTGCGGAACAAGAAGTGTCTCCACGTCGGTTGC
TCCAAACACCCGTCGTACGGTGTGGAGGGGAGTGGGAAGAGAGAGTTCTG
CGCCCAGCATGCGAGGCCAGAAATGGTCAACGTGGCCAACAAGAAATGCC
GCCTGGAGGGCTGCTATAAGATACCGTCCTATGGTATAGCAGGGAGCGGG
AAGAGGGAGTTCTGTGCCCAGCATGCCAGGGCAGGAATGATCAACGTCAC
GAGCAAGAGGTGCCTCAACGAGGGATGCTCCACAATTTCGTTGTATGGTG
TGGCGGGAAGCAGAAAATGCGAATTCTGTGCCCAGCATGCCAGTGCTGGG
TTGATTTATGTCAAGGCCAAAAAATGTGGCATCAATGGATGTTCCAGAAG
TGGTGAACATGCAGTGACGGGTGTTGACAAGGAAACGTTGTGTCGCCACC
ATGCCTCAGAGGCGACTGGCGCCTGCAGTGCAGCAGAGAGTTTTTCAAAG
GGCAACACCTCACACGATCGTCTGGCCGGGAATGGAGTGGGTAACGCTGT
CAGTGTAGGCGGAAGCAAACGTGGAAATATTGCCTCTGGCACTCGTTATG
GCATCGGCGCCAGCGGACGGTCAGGCAGTGACCGTCGTGGCGATGGTGAG
TGGCGTGGAACAACGACGCCACCGCTAATATCTAGGCTGCCAGCCGATAG
TTCTGACGTGGTTTCTGGAGAGGAGATCGGCGTGAAGCTAGAGTTGGATA
TGGATTACCCTGGTGGTTCTATTGATGTTGGTATAAGAAAACGTACCGCA
CCCGCTGCTCCAATCGGGTTGAACGTTTCTGACGTCAAGTCTAGTAGCAG
CACTAGCTGGAGTGTAAGGCGGGCTCGTAGGACATGGTCAGTGGAATCAG
GAAACCCTACTGGCAGCAGTCACTTGGTATCCGTGGAGACAGCAGCAAGC
GTAAAATTGGAGTGGCCTCCTCTTTAGGCAGAAATTATCAACACCAGGAA
CAAGAAGTGTAATCACGGGGGCTGCTCCAACGTTTCGTCGTGCGGTATGG
TCGAAAGCGGAGAAAGGGAATTCTGTGCCGAGCATGCCAGGGCAGGAATG
GTCGACGTGCGGAACAAGAAGTGTCTCCACGTCGGTTGCTCCAAACACCC
GTCGTACGGTGTGGAGGGGAGTGGGAAGAGAGAGTTCTGCGCCCAGCATG
CGAGGCCAGAAATGGTCAACGTGGCCAACAAGAAATGCCGCCTGGAGGGC
TGCTATAAGATACCGTCCTATGGTATAGCAGGGAGCGGGAAGAGGGAGTT
CTGTGCCCAGCATGCCAGGGCAGGAATGATCAACGTCACGAGCAAGAGGT
GCCTCAACGAGGGATGCTCCACAATTTCGTTGTATGGTGTGGCGGGAAGC
AGAAAATGCGAATTCTGTGCCCAGCATGCCAGTGCTGGGTTGATTTATGT
CAAGGCCAAAAAATGTGGCATCAATGGATGTTCCAGAAGTGGTGAACATG
CAGTGACGGGTGTTGACAAGGAAACGTTGTGTCGCCACCATGCCTCAGAG
GCGACTGGCGCCTGCAGTGCAGCAGAGAGTTTTTCAAAGGGCAACACCTC
ACACGATCGTCTGGCCGGGAATGGAGTGGGTAACGCTGTCAGTGTAGGCG
GAAGCAAACGTGGAAATATTGCCTCTGGCACTCGTTATGGCATCGGCGCC
AGCGGACGGTCAGGCAGTGACCGTCGTGGCGATGGTGAGTGGCGTGGAAC
AACGACGCCACCGCTAATATCTAGGCTGCCAGCCGATAGTTCTGACGTGG
TTTCTGGAGAGGAGATCGGCGTGAAGCTAGAGTTGGATATGGATTACCCT
GGTGGTTCTATTGATGTTGGTATAAGAAAACGTACCGCACCCGCTGCTCC
AATCGGGTTGAACGTTTCTGACGTCAAGTCTAGTAGCAGCACTAGCTGGA
GTGTAAGGCGGGCTCGTAGGACATGGTCAGTGGAATCAGGAAACCCTACT
GGCAGCAGTCACTTGGTATCCGTGGAGACAGCAGCAAGCGTAAAATTGGA
GTGGCCTCCTCTTTAG
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