mRNA_H-paniculata_contig13306.2072.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 2.380e-21 Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1 Query: 1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222 VY DN A LH + NR++S RTKH+ALRFFF+R LV GK+++H V+T D LAD+GTK+ + +F++LM+ I NF Sbjct: 922 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 5.340e-21 Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222 VY DN A LH + NR++S RTKH+ALRFFF+R LV GK+++H T D LA +GTK+ + +F++LM+ I NF Sbjct: 137 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 8.360e-21 Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1 Query: 1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222 VY DN A LH + NR++S RTKH+ALRFFF+R LV GK+++H V T D LAD+GTK+ + +F++LM+ I NF Sbjct: 1591 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.600e-20 Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1 Query: 1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNFN 225 +Y DN A LH + NR++S RTKH+ALRFFF+R LV GK+ +H V T AD+GTK+L+ +F++L+N IKNFN Sbjct: 280 LYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFN 354
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 5.290e-20 Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKN 219 VY DN A LH + NR++S RTKH+ALRFFF+R LV GK+++H V T D LAD+GTK+ + +F++LM+ I N Sbjct: 583 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINN 655
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 5.430e-20 Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222 VY DN A LH + NR++S RTKH+ALRFFF+R LV GK+++H T D LAD+GTK+ + +F +LM+ I NF Sbjct: 362 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 9.930e-20 Identity = 37/74 (50.00%), Postives = 61/74 (82.43%), Query Frame = 1 Query: 1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222 +++D+ A L+VI N+T+SG TKH+ALRFF++R +V+ G++++H + T D LAD+GT+YL+ Q+ +YL++ IKNF Sbjct: 703 LFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 4.170e-18 Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1 Query: 1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNFN 225 +Y DN A LH + NR+YS TKH+ALRFFF+R LV G++ +H V AD+GTK+L+ +F+ L+N IKNFN Sbjct: 645 LYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFN 719
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 7.830e-18 Identity = 37/68 (54.41%), Postives = 55/68 (80.88%), Query Frame = 1 Query: 13 NAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIK 216 N A LHVI N+T+SGRTKHVALRFF++R +V+ G++++H + T D LAD+GTK+L+ Q+ + L++ IK Sbjct: 619 NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIK 686
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5K626_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K626_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.720e-17 Identity = 33/75 (44.00%), Postives = 56/75 (74.67%), Query Frame = 1 Query: 1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNFN 225 +Y DN A LH + NR++S RTKH+ALRF+++R LV G+++++C+ T AD+GTK+L+ + ++L++ I +FN Sbjct: 863 LYCDNTATLHALGNRSFSSRTKHIALRFYYIRELVSEGRISINCIPTDSNPADIGTKHLNKHRLKHLLDIISSFN 937 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13306.2072.1 >prot_H-paniculata_contig13306.2072.1 ID=prot_H-paniculata_contig13306.2072.1|Name=mRNA_H-paniculata_contig13306.2072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQback to top mRNA from alignment at H-paniculata_contig13306:340..570+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13306.2072.1 ID=mRNA_H-paniculata_contig13306.2072.1|Name=mRNA_H-paniculata_contig13306.2072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig13306:340..570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13306:340..570+ >mRNA_H-paniculata_contig13306.2072.1 ID=mRNA_H-paniculata_contig13306.2072.1|Name=mRNA_H-paniculata_contig13306.2072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig13306:340..570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |