mRNA_H-paniculata_contig13306.2072.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13306.2072.1
Unique NamemRNA_H-paniculata_contig13306.2072.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.380e-21
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222
            VY DN A LH + NR++S RTKH+ALRFFF+R LV  GK+++H V+T D LAD+GTK+ +  +F++LM+ I NF
Sbjct:  922 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.340e-21
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222
            VY DN A LH + NR++S RTKH+ALRFFF+R LV  GK+++H   T D LA +GTK+ +  +F++LM+ I NF
Sbjct:  137 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210          
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.360e-21
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222
            VY DN A LH + NR++S RTKH+ALRFFF+R LV  GK+++H V T D LAD+GTK+ +  +F++LM+ I NF
Sbjct: 1591 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-20
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNFN 225
            +Y DN A LH + NR++S RTKH+ALRFFF+R LV  GK+ +H V T    AD+GTK+L+  +F++L+N IKNFN
Sbjct:  280 LYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFN 354          
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.290e-20
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKN 219
            VY DN A LH + NR++S RTKH+ALRFFF+R LV  GK+++H V T D LAD+GTK+ +  +F++LM+ I N
Sbjct:  583 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINN 655          
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 5.430e-20
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222
            VY DN A LH + NR++S RTKH+ALRFFF+R LV  GK+++H   T D LAD+GTK+ +  +F +LM+ I NF
Sbjct:  362 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 9.930e-20
Identity = 37/74 (50.00%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNF 222
            +++D+ A L+VI N+T+SG TKH+ALRFF++R +V+ G++++H + T D LAD+GT+YL+ Q+ +YL++ IKNF
Sbjct:  703 LFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776          
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.170e-18
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNFN 225
            +Y DN A LH + NR+YS  TKH+ALRFFF+R LV  G++ +H V      AD+GTK+L+  +F+ L+N IKNFN
Sbjct:  645 LYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFN 719          
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 7.830e-18
Identity = 37/68 (54.41%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   13 NAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIK 216
            N A LHVI N+T+SGRTKHVALRFF++R +V+ G++++H + T D LAD+GTK+L+ Q+ + L++ IK
Sbjct:  619 NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIK 686          
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Match: A0A6H5K626_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K626_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.720e-17
Identity = 33/75 (44.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQLADLGTKYLSTQKFRYLMNHIKNFN 225
            +Y DN A LH + NR++S RTKH+ALRF+++R LV  G+++++C+ T    AD+GTK+L+  + ++L++ I +FN
Sbjct:  863 LYCDNTATLHALGNRSFSSRTKHIALRFYYIRELVSEGRISINCIPTDSNPADIGTKHLNKHRLKHLLDIISSFN 937          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13306.2072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNH5_9PHAE2.380e-2155.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMK0_9PHAE5.340e-2152.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH6_9PHAE8.360e-2155.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9N2_9PHAE1.600e-2054.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE5.290e-2054.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE5.430e-2054.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6R7_9PHAE9.930e-2050.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG39_9PHAE4.170e-1852.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE7.830e-1854.41CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K626_9PHAE3.720e-1744.00Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13306contigH-paniculata_contig13306:340..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue8.2e-08
Seed eggNOG ortholog15368.BRADI1G43550.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.8253984-CDS-H-paniculata_contig13306:339..5701622929054.8253984-CDS-H-paniculata_contig13306:339..570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13306 340..570 +
1691480714.0009-CDS-H-paniculata_contig13306:339..5701691480714.0009-CDS-H-paniculata_contig13306:339..570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13306 340..570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13306.2072.1prot_H-paniculata_contig13306.2072.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13306 340..570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13306.2072.1

>prot_H-paniculata_contig13306.2072.1 ID=prot_H-paniculata_contig13306.2072.1|Name=mRNA_H-paniculata_contig13306.2072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
VYLDNAAALHVIANRTYSGRTKHVALRFFFVRGLVETGKVTVHCVKTADQ
LADLGTKYLSTQKFRYLMNHIKNFNN*
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mRNA from alignment at H-paniculata_contig13306:340..570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13306.2072.1 ID=mRNA_H-paniculata_contig13306.2072.1|Name=mRNA_H-paniculata_contig13306.2072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig13306:340..570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTACCTCGATAATGCGGCGGCCCTTCACGTAATTGCCAACCGCACGTA CAGCGGAAGGACGAAACACGTGGCCCTGCGTTTCTTCTTCGTGAGGGGAT TGGTGGAAACGGGGAAGGTTACCGTTCACTGCGTGAAAACAGCGGATCAA CTTGCTGATCTTGGAACGAAATATCTATCAACACAGAAGTTCCGTTATCT TATGAATCACATCAAGAATTTCAACAACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig13306:340..570+

>mRNA_H-paniculata_contig13306.2072.1 ID=mRNA_H-paniculata_contig13306.2072.1|Name=mRNA_H-paniculata_contig13306.2072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig13306:340..570+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTACCTCGATAATGCGGCGGCCCTTCACGTAATTGCCAACCGCACGTA
CAGCGGAAGGACGAAACACGTGGCCCTGCGTTTCTTCTTCGTGAGGGGAT
TGGTGGAAACGGGGAAGGTTACCGTTCACTGCGTGAAAACAGCGGATCAA
CTTGCTGATCTTGGAACGAAATATCTATCAACACAGAAGTTCCGTTATCT
TATGAATCACATCAAGAATTTCAACAACTAAGTCTACCTCGATAATGCGG
CGGCCCTTCACGTAATTGCCAACCGCACGTACAGCGGAAGGACGAAACAC
GTGGCCCTGCGTTTCTTCTTCGTGAGGGGATTGGTGGAAACGGGGAAGGT
TACCGTTCACTGCGTGAAAACAGCGGATCAACTTGCTGATCTTGGAACGA
AATATCTATCAACACAGAAGTTCCGTTATCTTATGAATCACATCAAGAAT
TTCAACAACTAA
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