prot_H-paniculata_contig13274.2045.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13274.2045.1
Unique Nameprot_H-paniculata_contig13274.2045.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length37
Homology
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.700e-12
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNH 34
            LSPQEDSPFLGEI+PG+EQ +ICNGLFRAPIF H
Sbjct:  668 LSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH 701          
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A835ZF46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF46_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.770e-8
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNH 34
            L PQE+SPF+GEI+ G  QP+ICN L+RAP+F H
Sbjct:  328 LEPQEESPFMGEIRAGVVQPSICNELYRAPLFEH 361          
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A484K6L4_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484K6L4_9ASTE)

HSP 1 Score: 51.6 bits (122), Expect = 1.610e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 37
            L P + SPFLG+IKPG+ Q ++   ++RAPIF HKVS
Sbjct:  841 LDPADKSPFLGDIKPGSRQSSLETNMYRAPIFQHKVS 877          
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A7S1X359_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X359_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 1.640e-6
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNH 34
            L+P +++PFLGE++PGT Q A+   LFRAP F H
Sbjct:   14 LAPDDETPFLGEVRPGTSQAAVETNLFRAPAFPH 47          
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A2K1JX46_PHYPA (Bromo domain-containing protein n=10 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JX46_PHYPA)

HSP 1 Score: 51.2 bits (121), Expect = 2.200e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 37
            L P EDSPFLG+I+PG  Q ++   ++RAPIF HKV+
Sbjct:  864 LEPTEDSPFLGDIRPGETQSSLETNMYRAPIFPHKVA 900          
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A2K1JG16_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JG16_PHYPA)

HSP 1 Score: 50.8 bits (120), Expect = 3.000e-6
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 37
            L P EDSPFLG+I+PG  Q ++   ++RAP+F HKV+
Sbjct:  860 LEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPHKVA 896          
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: UPI00090137A1 (transcription initiation factor TFIID subunit 1 isoform X1 n=4 Tax=Ipomoea TaxID=4119 RepID=UPI00090137A1)

HSP 1 Score: 50.8 bits (120), Expect = 3.000e-6
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 37
            L P + SPFLG+IKPG  Q ++   ++RAPIF HKVS
Sbjct:  828 LDPADKSPFLGDIKPGCSQSSLETNMYRAPIFQHKVS 864          
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A1S4C0Q9_TOBAC (transcription initiation factor TFIID subunit 1 isoform X1 n=29 Tax=Solanaceae TaxID=4070 RepID=A0A1S4C0Q9_TOBAC)

HSP 1 Score: 50.8 bits (120), Expect = 3.000e-6
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 37
            L P + SPFLG+IKPG  Q ++   ++RAPIF HKVS
Sbjct:  823 LDPADKSPFLGDIKPGCSQSSLETNMYRAPIFQHKVS 859          
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A7I4APP2_PHYPA (Ubiquitin-like domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4APP2_PHYPA)

HSP 1 Score: 50.8 bits (120), Expect = 3.010e-6
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 37
            L P EDSPFLG+I+PG  Q ++   ++RAP+F HKV+
Sbjct:  860 LEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPHKVA 896          
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A830BGU7_9LAMI (Transcription initiation factor TFIID subunit 1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BGU7_9LAMI)

HSP 1 Score: 50.1 bits (118), Expect = 5.620e-6
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 0
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 37
            L P E SPFLG+IKP + Q  +   ++RAPIF HKVS
Sbjct:  835 LDPAEKSPFLGDIKPASRQSCLETNMYRAPIFQHKVS 871          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FIW7_ECTSI1.700e-1285.29Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZF46_9STRA2.770e-864.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A484K6L4_9ASTE1.610e-656.76Uncharacterized protein n=3 Tax=Cuscuta sect. Clei... [more]
A0A7S1X359_9CHLO1.640e-655.88Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2K1JX46_PHYPA2.200e-656.76Bromo domain-containing protein n=10 Tax=Physcomit... [more]
A0A2K1JG16_PHYPA3.000e-654.05Uncharacterized protein n=5 Tax=Physcomitrium pate... [more]
UPI00090137A13.000e-656.76transcription initiation factor TFIID subunit 1 is... [more]
A0A1S4C0Q9_TOBAC3.000e-656.76transcription initiation factor TFIID subunit 1 is... [more]
A0A7I4APP2_PHYPA3.010e-654.05Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A830BGU7_9LAMI5.620e-656.76Transcription initiation factor TFIID subunit 1 n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022591Transcription initiation factor TFIID subunit 1, domain of unknown functionPFAMPF12157DUF3591coord: 1..36
e-value: 1.7E-10
score: 40.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13274contigH-paniculata_contig13274:5670..5780 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13274.2045.1mRNA_H-paniculata_contig13274.2045.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13274 5670..5780 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13274.2045.1 ID=prot_H-paniculata_contig13274.2045.1|Name=mRNA_H-paniculata_contig13274.2045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022591TFIID_sub1_DUF3591