mRNA_H-paniculata_contig13274.2045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13274.2045.1
Unique NamemRNA_H-paniculata_contig13274.2045.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.700e-12
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNH 102
            LSPQEDSPFLGEI+PG+EQ +ICNGLFRAPIF H
Sbjct:  668 LSPQEDSPFLGEIRPGSEQASICNGLFRAPIFKH 701
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BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A835ZF46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF46_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.770e-8
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNH 102
            L PQE+SPF+GEI+ G  QP+ICN L+RAP+F H
Sbjct:  328 LEPQEESPFMGEIRAGVVQPSICNELYRAPLFEH 361
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BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A484K6L4_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484K6L4_9ASTE)

HSP 1 Score: 51.6 bits (122), Expect = 1.610e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 111
            L P + SPFLG+IKPG+ Q ++   ++RAPIF HKVS
Sbjct:  841 LDPADKSPFLGDIKPGSRQSSLETNMYRAPIFQHKVS 877
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BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A7S1X359_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X359_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 1.640e-6
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNH 102
            L+P +++PFLGE++PGT Q A+   LFRAP F H
Sbjct:   14 LAPDDETPFLGEVRPGTSQAAVETNLFRAPAFPH 47
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BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A2K1JX46_PHYPA (Bromo domain-containing protein n=10 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JX46_PHYPA)

HSP 1 Score: 51.2 bits (121), Expect = 2.200e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 111
            L P EDSPFLG+I+PG  Q ++   ++RAPIF HKV+
Sbjct:  864 LEPTEDSPFLGDIRPGETQSSLETNMYRAPIFPHKVA 900
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BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A2K1JG16_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JG16_PHYPA)

HSP 1 Score: 50.8 bits (120), Expect = 3.000e-6
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 111
            L P EDSPFLG+I+PG  Q ++   ++RAP+F HKV+
Sbjct:  860 LEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPHKVA 896
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BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: UPI00090137A1 (transcription initiation factor TFIID subunit 1 isoform X1 n=4 Tax=Ipomoea TaxID=4119 RepID=UPI00090137A1)

HSP 1 Score: 50.8 bits (120), Expect = 3.000e-6
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 111
            L P + SPFLG+IKPG  Q ++   ++RAPIF HKVS
Sbjct:  828 LDPADKSPFLGDIKPGCSQSSLETNMYRAPIFQHKVS 864
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BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A1S4C0Q9_TOBAC (transcription initiation factor TFIID subunit 1 isoform X1 n=29 Tax=Solanaceae TaxID=4070 RepID=A0A1S4C0Q9_TOBAC)

HSP 1 Score: 50.8 bits (120), Expect = 3.000e-6
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 111
            L P + SPFLG+IKPG  Q ++   ++RAPIF HKVS
Sbjct:  823 LDPADKSPFLGDIKPGCSQSSLETNMYRAPIFQHKVS 859
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BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A7I4APP2_PHYPA (Ubiquitin-like domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4APP2_PHYPA)

HSP 1 Score: 50.8 bits (120), Expect = 3.010e-6
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 111
            L P EDSPFLG+I+PG  Q ++   ++RAP+F HKV+
Sbjct:  860 LEPTEDSPFLGDIRPGETQSSLETNMYRAPVFPHKVA 896
[Close]
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Match: A0A830BGU7_9LAMI (Transcription initiation factor TFIID subunit 1 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BGU7_9LAMI)

HSP 1 Score: 50.1 bits (118), Expect = 5.620e-6
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    1 LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS 111
            L P E SPFLG+IKP + Q  +   ++RAPIF HKVS
Sbjct:  835 LDPAEKSPFLGDIKPASRQSCLETNMYRAPIFQHKVS 871
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13274.2045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FIW7_ECTSI1.700e-1285.29Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZF46_9STRA2.770e-864.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A484K6L4_9ASTE1.610e-656.76Uncharacterized protein n=3 Tax=Cuscuta sect. Clei... [more]
A0A7S1X359_9CHLO1.640e-655.88Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2K1JX46_PHYPA2.200e-656.76Bromo domain-containing protein n=10 Tax=Physcomit... [more]
A0A2K1JG16_PHYPA3.000e-654.05Uncharacterized protein n=5 Tax=Physcomitrium pate... [more]
UPI00090137A13.000e-656.76transcription initiation factor TFIID subunit 1 is... [more]
A0A1S4C0Q9_TOBAC3.000e-656.76transcription initiation factor TFIID subunit 1 is... [more]
A0A7I4APP2_PHYPA3.010e-654.05Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A830BGU7_9LAMI5.620e-656.76Transcription initiation factor TFIID subunit 1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13274contigH-paniculata_contig13274:5670..5780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog2880.D7FIW7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.0064132-CDS-H-paniculata_contig13274:5669..57801622929051.0064132-CDS-H-paniculata_contig13274:5669..5780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13274 5670..5780 -
1691480712.8175912-CDS-H-paniculata_contig13274:5669..57801691480712.8175912-CDS-H-paniculata_contig13274:5669..5780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13274 5670..5780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13274.2045.1prot_H-paniculata_contig13274.2045.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13274 5670..5780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13274.2045.1

>prot_H-paniculata_contig13274.2045.1 ID=prot_H-paniculata_contig13274.2045.1|Name=mRNA_H-paniculata_contig13274.2045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
LSPQEDSPFLGEIKPGTEQPAICNGLFRAPIFNHKVS
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mRNA from alignment at H-paniculata_contig13274:5670..5780-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13274.2045.1 ID=mRNA_H-paniculata_contig13274.2045.1|Name=mRNA_H-paniculata_contig13274.2045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig13274:5670..5780- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGTCCTCAGGAAGACTCTCCGTTCCTTGGAGAAATCAAGCCGGGCAC
CGAACAGCCGGCCATCTGCAACGGCCTCTTCCGTGCCCCCATATTCAATC
ACAAGGTGTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig13274:5670..5780-

>mRNA_H-paniculata_contig13274.2045.1 ID=mRNA_H-paniculata_contig13274.2045.1|Name=mRNA_H-paniculata_contig13274.2045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig13274:5670..5780- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGTCCTCAGGAAGACTCTCCGTTCCTTGGAGAAATCAAGCCGGGCAC
CGAACAGCCGGCCATCTGCAACGGCCTCTTCCGTGCCCCCATATTCAATC
ACAAGGTGTCATTGAGTCCTCAGGAAGACTCTCCGTTCCTTGGAGAAATC
AAGCCGGGCACCGAACAGCCGGCCATCTGCAACGGCCTCTTCCGTGCCCC
CATATTCAATCACAAGGTGTCA
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