mRNA_H-paniculata_contig13242.2032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A6H5KWC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWC3_9PHAE) HSP 1 Score: 103 bits (256), Expect = 3.040e-25 Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 40 TVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNR 267
TVFVGNL SGDV+A QLE+LF A GP+ VR+ PGS FGFVEFE H+DA AI ME ++GGN +RL+WGN K+R
Sbjct: 6 TVFVGNLRSGDVSAEQLEALFRAAGPLSGVRVAPGSSFGFVEFERHEDAANAIAKMEGFDIGGNHVRLSWGNHKSR 81
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A2P6Q2S7_ROSCH (Putative nucleotide-binding alpha-beta plait domain-containing protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q2S7_ROSCH) HSP 1 Score: 69.3 bits (168), Expect = 5.290e-13 Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 25 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWG 252
DPNNTT+FVGNL +VT L ++F+ G +V V+I G GFV+F A A+ + N +GG IRL+WG
Sbjct: 16 DPNNTTIFVGNL-DANVTDDHLRTVFSQYGELVHVKIPAGKRCGFVQFADRSRAEEALQGLNNSQIGGQNIRLSWG 90
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A2P5EET4_TREOI (Splicing factor-like protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5EET4_TREOI) HSP 1 Score: 73.6 bits (179), Expect = 5.950e-13 Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 25 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHGDMSSGPHFG 327
DPNNTT+FVGNL S +VT L +F+ G +V V+I G GFV+F A A+ + +GG IRL+WG + + PH Q G+ +G ++G
Sbjct: 256 DPNNTTIFVGNLDS-NVTDDHLRQVFSQYGELVHVKIPTGKRCGFVQFADRGSAEEALRLLNGTPLGGQNIRLSWGRSPSNKQPH----QEGNQWNGGYYG 351
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A4T0X719_9ASCO (Uncharacterized protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0X719_9ASCO) HSP 1 Score: 73.2 bits (178), Expect = 9.430e-13 Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1
Query: 4 PSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHG 300
PS DP NTTVFVG L +G + L +LF A GPI+ +++ PG GFV+F DA AI + +GG+ IRL+WG R ++H HG
Sbjct: 277 PSNQDFDDPTNTTVFVGGLANG-LNEDTLMALFEAFGPIIDIKVPPGKGCGFVKFIERKDAENAIEGLHGFVIGGSRIRLSWGRPSKSR--NYHNVPHG 372
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A2P6Q2U9_ROSCH (Putative nucleotide-binding alpha-beta plait domain-containing protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6Q2U9_ROSCH) HSP 1 Score: 71.6 bits (174), Expect = 2.930e-12 Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query: 4 PSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHGD 303
P DPNNTT+FVGNL +VT L ++F+ G +V V+I G GFV+F A A+ + N +GG IRL+WG R P + QQ D
Sbjct: 258 PGAKNETDPNNTTIFVGNL-DANVTDDHLRTVFSQYGELVHVKIPAGKRCGFVQFADRSRAEEALQGLNNSQIGGQNIRLSWG-----RSPSNKQQAQAD 351
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: UPI001E85252E (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E85252E) HSP 1 Score: 68.6 bits (166), Expect = 5.080e-12 Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 1
Query: 25 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHGDMSSGPHFG 327
DPNNTT+FVGNL S +VT L +F+ G +V V+I G GFV+F A A+ + +GG IRL+WG + + P Q ++G ++G
Sbjct: 38 DPNNTTIFVGNLDS-NVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRILNGTQLGGQNIRLSWGRSPSNKQP---QADPNQWNAGGYYG 134
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: UPI001AD8B259 (polyadenylate-binding protein RBP45B isoform X2 n=2 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8B259) HSP 1 Score: 70.5 bits (171), Expect = 7.230e-12 Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 4 PSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWG 252
P DPNNTT+FVGNL +VT L ++F+ G +V V+I G GFV+F A A+ + N +GG IRL+WG
Sbjct: 258 PGAKNETDPNNTTIFVGNL-DANVTDDHLRTVFSQYGELVHVKIPAGKRCGFVQFADRSRAEEALQGLNNSQIGGQNIRLSWG 339
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A1S3B2R4_CUCME (polyadenylate-binding protein RBP45-like isoform X1 n=38 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3B2R4_CUCME) HSP 1 Score: 70.1 bits (170), Expect = 1.030e-11 Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 1
Query: 25 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQ-KNRRLPHHHQQQHGDMSSGPHFGRGAG 339
DPNNTT+FVGNL +VT L +F G +V V+I G GFV+F + A A+ + +GG IRL+WG N+++P Q + G ++G G G
Sbjct: 261 DPNNTTIFVGNL-DANVTDDHLRQVFGQYGELVHVKIPVGKRCGFVQFSDRNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQVP---QADPNQWNGGGYYGYGQG 362
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A803NZQ3_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NZQ3_CANSA) HSP 1 Score: 69.7 bits (169), Expect = 1.420e-11 Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 25 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHGDMSSG 315
DPNNTT+FVGNL S VT L +F+ G +V V+I G GFV+F A A+ + +GG IRL+WG R P+ QQ G +G
Sbjct: 268 DPNNTTIFVGNLDS-TVTDDHLRQVFSQYGELVHVKIPTGKRCGFVQFAERSSAEEALRLLNGTQLGGQNIRLSWG-----RSPNKQTQQEGSQWNG 358
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A2P6VMW4_9CHLO (Oligouridylate-binding 1-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VMW4_9CHLO) HSP 1 Score: 69.7 bits (169), Expect = 1.530e-11 Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 4 PSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWG 252
P L DP NT V+VGNL ++ ++ F A GPI +V++ +GFV +++H DA RAI M N+GG +++ +WG
Sbjct: 291 PQILDRADPTNTNVYVGNLAPA-LSDAEVRRHFGAFGPIAEVKLYRKGSYGFVRYKNHQDAVRAIGGMNGQNLGGKVMKCSWG 372 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13242.2032.1 >prot_H-paniculata_contig13242.2032.1 ID=prot_H-paniculata_contig13242.2032.1|Name=mRNA_H-paniculata_contig13242.2032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp MPSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVback to top mRNA from alignment at H-paniculata_contig13242:1154..3244- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13242.2032.1 ID=mRNA_H-paniculata_contig13242.2032.1|Name=mRNA_H-paniculata_contig13242.2032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2091bp|location=Sequence derived from alignment at H-paniculata_contig13242:1154..3244- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13242:1154..3244- >mRNA_H-paniculata_contig13242.2032.1 ID=mRNA_H-paniculata_contig13242.2032.1|Name=mRNA_H-paniculata_contig13242.2032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig13242:1154..3244- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |