prot_H-paniculata_contig13242.2032.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig13242.2032.1
Unique Nameprot_H-paniculata_contig13242.2032.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length115
Homology
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A6H5KWC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWC3_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.040e-25
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 0
Query:   14 TVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNR 89
            TVFVGNL SGDV+A QLE+LF A GP+  VR+ PGS FGFVEFE H+DA  AI  ME  ++GGN +RL+WGN K+R
Sbjct:    6 TVFVGNLRSGDVSAEQLEALFRAAGPLSGVRVAPGSSFGFVEFERHEDAANAIAKMEGFDIGGNHVRLSWGNHKSR 81          
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A2P6Q2S7_ROSCH (Putative nucleotide-binding alpha-beta plait domain-containing protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q2S7_ROSCH)

HSP 1 Score: 69.3 bits (168), Expect = 5.290e-13
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0
Query:    9 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWG 84
            DPNNTT+FVGNL   +VT   L ++F+  G +V V+I  G   GFV+F     A  A+  + N  +GG  IRL+WG
Sbjct:   16 DPNNTTIFVGNL-DANVTDDHLRTVFSQYGELVHVKIPAGKRCGFVQFADRSRAEEALQGLNNSQIGGQNIRLSWG 90          
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A2P5EET4_TREOI (Splicing factor-like protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5EET4_TREOI)

HSP 1 Score: 73.6 bits (179), Expect = 5.950e-13
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 0
Query:    9 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHGDMSSGPHFG 109
            DPNNTT+FVGNL S +VT   L  +F+  G +V V+I  G   GFV+F     A  A+  +    +GG  IRL+WG   + + PH    Q G+  +G ++G
Sbjct:  256 DPNNTTIFVGNLDS-NVTDDHLRQVFSQYGELVHVKIPTGKRCGFVQFADRGSAEEALRLLNGTPLGGQNIRLSWGRSPSNKQPH----QEGNQWNGGYYG 351          
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A4T0X719_9ASCO (Uncharacterized protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0X719_9ASCO)

HSP 1 Score: 73.2 bits (178), Expect = 9.430e-13
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 0
Query:    2 PSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHG 100
            PS     DP NTTVFVG L +G +    L +LF A GPI+ +++ PG   GFV+F    DA  AI  +    +GG+ IRL+WG     R  ++H   HG
Sbjct:  277 PSNQDFDDPTNTTVFVGGLANG-LNEDTLMALFEAFGPIIDIKVPPGKGCGFVKFIERKDAENAIEGLHGFVIGGSRIRLSWGRPSKSR--NYHNVPHG 372          
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A2P6Q2U9_ROSCH (Putative nucleotide-binding alpha-beta plait domain-containing protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6Q2U9_ROSCH)

HSP 1 Score: 71.6 bits (174), Expect = 2.930e-12
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:    2 PSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHGD 101
            P      DPNNTT+FVGNL   +VT   L ++F+  G +V V+I  G   GFV+F     A  A+  + N  +GG  IRL+WG     R P + QQ   D
Sbjct:  258 PGAKNETDPNNTTIFVGNL-DANVTDDHLRTVFSQYGELVHVKIPAGKRCGFVQFADRSRAEEALQGLNNSQIGGQNIRLSWG-----RSPSNKQQAQAD 351          
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: UPI001E85252E (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E85252E)

HSP 1 Score: 68.6 bits (166), Expect = 5.080e-12
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 0
Query:    9 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHGDMSSGPHFG 109
            DPNNTT+FVGNL S +VT   L  +F+  G +V V+I  G   GFV+F     A  A+  +    +GG  IRL+WG   + + P   Q      ++G ++G
Sbjct:   38 DPNNTTIFVGNLDS-NVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRILNGTQLGGQNIRLSWGRSPSNKQP---QADPNQWNAGGYYG 134          
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: UPI001AD8B259 (polyadenylate-binding protein RBP45B isoform X2 n=2 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8B259)

HSP 1 Score: 70.5 bits (171), Expect = 7.230e-12
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 0
Query:    2 PSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWG 84
            P      DPNNTT+FVGNL   +VT   L ++F+  G +V V+I  G   GFV+F     A  A+  + N  +GG  IRL+WG
Sbjct:  258 PGAKNETDPNNTTIFVGNL-DANVTDDHLRTVFSQYGELVHVKIPAGKRCGFVQFADRSRAEEALQGLNNSQIGGQNIRLSWG 339          
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A1S3B2R4_CUCME (polyadenylate-binding protein RBP45-like isoform X1 n=38 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3B2R4_CUCME)

HSP 1 Score: 70.1 bits (170), Expect = 1.030e-11
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 0
Query:    9 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQ-KNRRLPHHHQQQHGDMSSGPHFGRGAG 113
            DPNNTT+FVGNL   +VT   L  +F   G +V V+I  G   GFV+F   + A  A+  +    +GG  IRL+WG    N+++P   Q      + G ++G G G
Sbjct:  261 DPNNTTIFVGNL-DANVTDDHLRQVFGQYGELVHVKIPVGKRCGFVQFSDRNCAEEALRALNGTQIGGQNIRLSWGRSPSNKQVP---QADPNQWNGGGYYGYGQG 362          
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A803NZQ3_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NZQ3_CANSA)

HSP 1 Score: 69.7 bits (169), Expect = 1.420e-11
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 0
Query:    9 DPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHGDMSSG 105
            DPNNTT+FVGNL S  VT   L  +F+  G +V V+I  G   GFV+F     A  A+  +    +GG  IRL+WG     R P+   QQ G   +G
Sbjct:  268 DPNNTTIFVGNLDS-TVTDDHLRQVFSQYGELVHVKIPTGKRCGFVQFAERSSAEEALRLLNGTQLGGQNIRLSWG-----RSPNKQTQQEGSQWNG 358          
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Match: A0A2P6VMW4_9CHLO (Oligouridylate-binding 1-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VMW4_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 1.530e-11
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 0
Query:    2 PSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSVFGFVEFESHDDARRAINTMENMNVGGNIIRLTWG 84
            P  L   DP NT V+VGNL    ++  ++   F A GPI +V++     +GFV +++H DA RAI  M   N+GG +++ +WG
Sbjct:  291 PQILDRADPTNTNVYVGNLAPA-LSDAEVRRHFGAFGPIAEVKLYRKGSYGFVRYKNHQDAVRAIGGMNGQNLGGKVMKCSWG 372          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13242.2032.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWC3_9PHAE3.040e-2564.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P6Q2S7_ROSCH5.290e-1344.74Putative nucleotide-binding alpha-beta plait domai... [more]
A0A2P5EET4_TREOI5.950e-1339.60Splicing factor-like protein n=2 Tax=Cannabaceae T... [more]
A0A4T0X719_9ASCO9.430e-1341.41Uncharacterized protein n=1 Tax=[Candida] inconspi... [more]
A0A2P6Q2U9_ROSCH2.930e-1240.00Putative nucleotide-binding alpha-beta plait domai... [more]
UPI001E85252E5.080e-1237.62Uncharacterized protein n=1 Tax=Ziziphus jujuba va... [more]
UPI001AD8B2597.230e-1242.17polyadenylate-binding protein RBP45B isoform X2 n=... [more]
A0A1S3B2R4_CUCME1.030e-1137.74polyadenylate-binding protein RBP45-like isoform X... [more]
A0A803NZQ3_CANSA1.420e-1141.24Uncharacterized protein n=4 Tax=Cannabis sativa Ta... [more]
A0A2P6VMW4_9CHLO1.530e-1138.55Oligouridylate-binding 1-like n=1 Tax=Micractinium... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 14..82
e-value: 4.5E-18
score: 76.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 15..80
e-value: 4.2E-15
score: 55.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 13..86
score: 15.562
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..91
e-value: 5.0E-21
score: 76.7
NoneNo IPR availablePANTHERPTHR47640:SF6POLYADENYLATE-BINDING PROTEIN RBP45Bcoord: 8..101
NoneNo IPR availablePANTHERPTHR47640FAMILY NOT NAMEDcoord: 8..101
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13242contigH-paniculata_contig13242:1154..3244 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13242.2032.1mRNA_H-paniculata_contig13242.2032.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig13242 1154..3244 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig13242.2032.1 ID=prot_H-paniculata_contig13242.2032.1|Name=mRNA_H-paniculata_contig13242.2032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MPSYLQPVDPNNTTVFVGNLISGDVTAGQLESLFNAVGPIVQVRITPGSV
FGFVEFESHDDARRAINTMENMNVGGNIIRLTWGNQKNRRLPHHHQQQHG
DMSSGPHFGRGAGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf