mRNA_H-paniculata_contig13036.1902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13036.1902.1
Unique NamemRNA_H-paniculata_contig13036.1902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13036.1902.1 vs. uniprot
Match: A0A6H5L245_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L245_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.420e-19
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 GFKQCEGHPPCEICSTHTEPWCNARLFLEENMFNAHVGKSLYAMQLQR 144
            G KQC G PPCE+C+THTEPWCN R++L E ++NAHVGKS+YAMQL+R
Sbjct:   84 GRKQCNGRPPCELCNTHTEPWCNPRVYLGEILYNAHVGKSVYAMQLRR 131
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BLAST of mRNA_H-paniculata_contig13036.1902.1 vs. uniprot
Match: D7FHD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD4_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.260e-18
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 GFKQCEGHPPCEICSTHTEPWCNARLFLEENMFNAHVGKSLYAMQLQR 144
            G KQC G PPCE+C+THTEPWCN R++L E ++NAHVGKS+YAMQL+R
Sbjct:  481 GRKQCNGRPPCELCNTHTEPWCNPRVYLGEVLYNAHVGKSVYAMQLRR 528
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13036.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L245_9PHAE1.420e-1970.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD4_ECTSI1.260e-1870.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13036contigH-paniculata_contig13036:592..1674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-03_003890.1
Exons2
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929029.6510653-CDS-H-paniculata_contig13036:591..6531622929029.6510653-CDS-H-paniculata_contig13036:591..653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13036 592..653 +
1691480705.6130767-CDS-H-paniculata_contig13036:591..6531691480705.6130767-CDS-H-paniculata_contig13036:591..653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13036 592..653 +
1622929029.6614614-CDS-H-paniculata_contig13036:1589..16741622929029.6614614-CDS-H-paniculata_contig13036:1589..1674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13036 1590..1674 +
1691480705.626969-CDS-H-paniculata_contig13036:1589..16741691480705.626969-CDS-H-paniculata_contig13036:1589..1674Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13036 1590..1674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13036.1902.1prot_H-paniculata_contig13036.1902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13036 592..1674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13036.1902.1

>prot_H-paniculata_contig13036.1902.1 ID=prot_H-paniculata_contig13036.1902.1|Name=mRNA_H-paniculata_contig13036.1902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
GFKQCEGHPPCEICSTHTEPWCNARLFLEENMFNAHVGKSLYAMQLQR*
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mRNA from alignment at H-paniculata_contig13036:592..1674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13036.1902.1 ID=mRNA_H-paniculata_contig13036.1902.1|Name=mRNA_H-paniculata_contig13036.1902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-paniculata_contig13036:592..1674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTCAAGCAGTGTGAAGGCCATCCACCATGCGAAATCTGCAGCACTCA
CACGGAGCCGTGGTAAGTGAATTAACCACGTCTATTATAACTTGAAAGAC
TATGAATCGGGTGTCGAGGTTTTACCATTTCGAATTACTGCCCTTGGTGA
AAATCAACCTTGACGGCAGACAGACGTAGGTCGTCGGAGAATGCCCCCAC
ACCGGTCTATTCGAATGGATCATGCTGGTCATCATTTTTGCTCCGTAGTT
TTTCGTTCGAAGCTGTCGTTTTATTTATAGATGAGGTGGGAGTCGACAAA
ATGTGTTAATGCTGTCAACAAAAGTCGACGCATTTCGTAAACTGGAACGC
TTGAATATCTAAAATTACGTAGATACTCCAGCTAGGCGTATTGCACGTTC
CGTCGACATGGTCATTGTATCTCTGCTATACCTTACCAAGGAGCATTAAA
CTTGTACAAGTATGCGTTTCCCGTATGCATGCTCTGTTTGACTGCCCCCG
TCCGAAGACAGAGGTGCTCGCCGCGCATTTCGAGGACAAACATGTTTGAA
CAGGAAAAAAGGATAGGTTTAGGGGTAGGGTAAACCTTGAAACCTTGACC
ATCACCCGACGATTAACTTTGCTTCGACATTAACATGGTAGTCATCACTT
TGGGTTTCAGGATGCGGTCGTCACGAACACGAGCGAATCGGAACTCTTGT
ATCAACCACAGTGTTACTGCACGGTTGTGTAGAGGCAAACATCAGGTTTG
GAGGATCACTGCTGCCGGATTCCGAATAGCACATCCGTCAGTTTGTTCGG
AATGTTTCTGGGCAAGAAATATATCGCCGAATATGCTCGTCGACGGTTTT
CTTGGAAACCTGAGGTATGGTTACAGAGGAGCTTGATTTCAAGAGTCCAA
TGAACTAATCCTATGCTATCTTCTCCGAATACAAAATAACCGTTGAGATT
GTTCCCGCTGTGCGAAATTCTACTTTTCTTGGCTGTGGTGAACATCAGGT
GCAATGCAAGGCTTTTTTTGGAAGAAAACATGTTTAATGCGCACGTCGGC
AAAAGCTTGTACGCCATGCAGCTTCAGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13036:592..1674+

>mRNA_H-paniculata_contig13036.1902.1 ID=mRNA_H-paniculata_contig13036.1902.1|Name=mRNA_H-paniculata_contig13036.1902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig13036:592..1674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTCAAGCAGTGTGAAGGCCATCCACCATGCGAAATCTGCAGCACTCA
CACGGAGCCGTGGGATTCAAGCAGTGTGAAGGCCATCCACCATGCGAAAT
CTGCAGCACTCACACGGAGCCGTGGTGCAATGCAAGGCTTTTTTTGGAAG
AAAACATGTTTAATGCGCACGTCGGCAAAAGCTTGTACGCCATGCAGCTT
CAGAGGTGAGTGCAATGCAAGGCTTTTTTTGGAAGAAAACATGTTTAATG
CGCACGTCGGCAAAAGCTTGTACGCCATGCAGCTTCAGAGGTGA
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