mRNA_H-paniculata_contig12972.1865.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12972.1865.1
Unique NamemRNA_H-paniculata_contig12972.1865.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 4.540e-78
Identity = 143/183 (78.14%), Postives = 154/183 (84.15%), Query Frame = 1
Query:   10 AMYWKVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLDVSRLQRADDREDDDIGAAGGISISNALEQSARSPLGMRPRWRKKNTPMVPVEELRKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVDLAFQDSRR 558
            A+  KVVEARDRRSV+VTTPTSVKSFMLKLVEL+HKLD SRL+RA+ RED+  GAAGGI          R  LGMRP WR+    + PV+ELR+QAEIAVRVL VFR AALLLDEVDLILQPLKSELNWPLG KRPLDFTRARPGS LGNGLRWQ+PFHLLEAFFYYTEGRM VDLAFQDSRR
Sbjct: 3032 AILEKVVEARDRRSVMVTTPTSVKSFMLKLVELLHKLDTSRLERAEIREDNS-GAAGGI----------RRALGMRPGWRRAPAKLEPVQELRRQAEIAVRVLTVFRGAALLLDEVDLILQPLKSELNWPLGVKRPLDFTRARPGSQLGNGLRWQVPFHLLEAFFYYTEGRMVVDLAFQDSRR 3203          
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 192 bits (487), Expect = 6.190e-53
Identity = 102/183 (55.74%), Postives = 134/183 (73.22%), Query Frame = 1
Query:   10 AMYWKVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLDVSRLQRADDREDDDIGAAGGISISNALEQSARSPLGMRPRWRKKNTPMVPVEELRKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVDLAFQDSRR 558
            A+  K  EA+  R+++VTTPTSVK+FMLK  EL+ KL+ SRL + ++++DD +G       S+ + +  R  LG R  W  +   +  +E+LR+QA IAV +L +F+  AL+LDEVDLIL PLKSELNWPLG KRPLD TRARPGS LG+GLRWQIPFHLL+A FY +EGR  +D+AF+DSRR
Sbjct: 3719 ALLSKAEEAQRARAIMVTTPTSVKAFMLKFAELLDKLEASRLYK-EEKDDDRLG-------SSDIARGIRRKLGWRKGWSARPEVLRDMEDLRRQAGIAVAILRIFKEGALILDEVDLILHPLKSELNWPLGRKRPLDMTRARPGSKLGDGLRWQIPFHLLDALFYCSEGRSVIDVAFRDSRR 3893          
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: W7TMJ4_9STRA (EF-Hand 1, calcium-binding site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMJ4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.850e-40
Identity = 91/197 (46.19%), Postives = 121/197 (61.42%), Query Frame = 1
Query:    1 VVRAMYWKVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLDVSRLQRADDREDDDIGAAGGISISNALEQSARSPLGMRPRWRKKNTPMVPVEELRKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVDLAFQDSRRYIVVCAIVAEV 591
            V   +Y K+  AR+ RSVVVTTPT++KSF LK VE+ H LD + L     ++     A  G+S  +   +   +                 +  LRK+A + V+++D+FR  ALLLDEVDLIL PLKSELNWP G KRPLDFTR+R G    +GLRW+IPFHLL+A FY+TE +M V   F+DSR  +++   V EV
Sbjct: 2416 VTEGLYRKLHHARETRSVVVTTPTAIKSFALKFVEICHILDGTSLPPEKTKKSG-FKALFGLSREDVKGRELSA---------------AAIGGLRKEARLCVQIIDLFRTGALLLDEVDLILHPLKSELNWPTGGKRPLDFTRSRDGHEKNDGLRWKIPFHLLDALFYFTENKMTVG--FRDSREAVMLLEKVKEV 2594          
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: A0A7S1U8D0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8D0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.870e-34
Identity = 85/194 (43.81%), Postives = 117/194 (60.31%), Query Frame = 1
Query:   22 KVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLD--VSRLQRADDREDDDIGAAGGISISNALEQSARSPLGMRPRWRKKNTPM--VPVEELRKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVDLAFQDSRRYIVVCAIVAEV 591
            K+  A + R++VV TPTS+KSF LKLVE++H LD  V+   +AD+         G   IS AL Q+A   LG+  R    +  +    VE +++QA   V++L +F+   L++DE+DL+L PLKSELNWPLG K PLDFTR    S  GNGLRW +PFHLL+  FY  EG  ++     +SR    V   +A+V
Sbjct:  245 KLRRASESRAIVVATPTSIKSFQLKLVEIIHALDANVAAGAKADE---------GTRGISKALRQAA-GYLGLSRRGSISDLILEEAQVENMKQQANTIVQILAIFKAGTLIVDEIDLVLHPLKSELNWPLGVKEPLDFTR----SESGNGLRWDLPFHLLDGVFYAAEGPQSLTTEITESRESRTVLEEIAKV 424          
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: A0A7R9UG66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG66_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.330e-33
Identity = 79/180 (43.89%), Postives = 109/180 (60.56%), Query Frame = 1
Query:   22 KVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLDVSRLQRADDREDDDIGAAGGISISNALEQSARSPLGMRPRWRKKNTPMVP--VEELRKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVDLAFQDSR 555
            K+  A + R++VV+ PTS+KSF LKL+E++H LD +            +GA     IS+AL+ +A    G+R         +    VE+L++QA   V++L +F+ A L+LDEVDL+L PLKSELNWPLG K  LDFTR    S+ G GLRW +PFHLL+  FY  EG  ++     DSR
Sbjct: 2554 KLRRAAESRAIVVSNPTSIKSFQLKLIEIIHALDANVAAGGQ------LGAIDSKGISDALKSAAAGFFGLRREGSMSELILQEDEVEKLKQQAITIVQILKIFKSATLILDEVDLLLHPLKSELNWPLGVKEALDFTR----SSSGTGLRWDLPFHLLDGIFYAAEGIRSLTTEVTDSR 2723          
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: A0A7S4EGX6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EGX6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.090e-32
Identity = 79/197 (40.10%), Postives = 120/197 (60.91%), Query Frame = 1
Query:    1 VVRAMYWKVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLDVSRLQRADDREDDDIGAAGGISISNALEQSARSPLGMRPRWRKKNTPMVPVEELRKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVDLAFQDSRRYIVVCAIVAEV 591
            + + +Y K+ +ARD R+V+  TPTS+KSFMLK VE++  L+ ++  R   R+  + G  G  S+S A+ +  R             + +V  +   +       +L +FR   LLLDEVDLIL PLKSELNWP+G K P+D++R++    LG GLRW I +H+L+A FYYTE +M+V  AF+DSR  + +   +++V
Sbjct:  472 ITKDLYLKLCKARDSRAVICATPTSIKSFMLKFVEMMKVLEETKFGRGGTRQPANNGVFGNFSLS-AIARRFRD-----------QSEIVQAQVNPEDVFYCTEILKLFRSGVLLLDEVDLILHPLKSELNWPIGLKDPIDYSRSK----LGIGLRWDIQWHILDAVFYYTERKMSV--AFKDSREALSILESMSQV 650          
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: A0A7S4AD69_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AD69_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.130e-32
Identity = 79/197 (40.10%), Postives = 120/197 (60.91%), Query Frame = 1
Query:    1 VVRAMYWKVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLDVSRLQRADDREDDDIGAAGGISISNALEQSARSPLGMRPRWRKKNTPMVPVEELRKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVDLAFQDSRRYIVVCAIVAEV 591
            + + +Y K+ +ARD R+V+  TPTS+KSFMLK VE++  L+ ++  R   R+  + G  G  S+S A+ +  R             + +V  +   +       +L +FR   LLLDEVDLIL PLKSELNWP+G K P+D++R++    LG GLRW I +H+L+A FYYTE +M+V  AF+DSR  + +   +++V
Sbjct:  472 ITKDLYLKLCKARDSRAVICATPTSIKSFMLKFVEMMKVLEETKFGRGGTRQPANNGVFGNFSLS-AIARRFRD-----------QSEIVQAQVNPEDVFYCTEILKLFRSGVLLLDEVDLILHPLKSELNWPIGLKDPIDYSRSK----LGIGLRWDIQWHILDAVFYYTERKMSV--AFKDSREALSILESMSQV 650          
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: A0A2R5FYY4_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY4_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.170e-32
Identity = 80/179 (44.69%), Postives = 110/179 (61.45%), Query Frame = 1
Query:    7 RAMYWKVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLDVSRLQRADDREDDDIGAAGGISISNALEQSARSPLGMRPRWRKKNTPMVPVEE---LRKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVD 534
            R MY K++ AR  R+VV TTPT++KSF LKLVE  H LD ++ +  DD            S  + ++   +  L +  + R+    M+  EE   LR+Q  ++ R+LD+FR   L+LDEVDLIL PL+SELNWP+G K PLDFTR+       +G+RW IPFHLL+AFF  T G+  +D
Sbjct: 2847 RQMYRKLLIARKSRAVVCTTPTALKSFFLKLVEAAHLLDAAKYESEDDMR----------SAPSIIKSFFKETLSLTSKARE----MLTKEEATRLREQMRLSSRILDLFRDGVLILDEVDLILHPLRSELNWPIGNKVPLDFTRSHVKGH--DGMRWMIPFHLLDAFFARTAGQTTLD 3009          
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: A0A2R5GI29_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI29_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.950e-32
Identity = 77/190 (40.53%), Postives = 116/190 (61.05%), Query Frame = 1
Query:    7 RAMYWKVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLDVSRLQRADDREDDDIGAAG--GISISNALEQSARSPLGMRPRWRKKNTPMVPVEELRKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVDLAFQDSRRYIVV 570
            + +Y K+++A+  R VV++TPT++KSF LK VE V+ +   +   AD+++  ++   G  G  I+  +    +  +             + +++L  QA+  VR+L +FR  +L+LDEVDLIL PLKSELNWP+G K PLDFTR   G+    GLRW+IPFHLL+A  + TE RM V   F++SR   V+
Sbjct: 3157 KTLYQKLLKAKAARGVVISTPTAIKSFTLKFVETVNAILTLKAAIADNKDTSEMSFFGVLGRRITTTIRGDRQQEMNQ-----------LMLQKLIVQAQTCVRILSLFRNGSLILDEVDLILHPLKSELNWPMGQKEPLDFTRTPTGAV--TGLRWRIPFHLLDAILFATERRMTVR--FENSREARVI 3331          
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Match: A0A0G4EXY0_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EXY0_VITBC)

HSP 1 Score: 132 bits (331), Expect = 5.470e-32
Identity = 85/218 (38.99%), Postives = 128/218 (58.72%), Query Frame = 1
Query:   13 MYWKVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLD--VSRLQRADDREDDDIGAAGGISISNALEQ--SARSPLGMRPRWRKKNTPMVPVEEL-----RKQAEIAVRVLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTR--------------ARPGSTLGNGLRWQIPFHLLEAFFYYTEGRMAVDLAFQDSRRYIVVCAIVAEVAK 597
            +Y K+++A++ RSVV+ +PTS+KS +LK VEL+H LD   SR +           AAG   +S AL++    +S L +     +    +VP++++     RK+ ++ +R+L +F+   LL+DEVDLIL PL+SEL+WP+GAK+PLDFTR              +  G     GLRWQ+P+HLL+A FYY  G M+V   F DSR    +   + EV +
Sbjct: 2627 LYLKLLQAKETRSVVLASPTSIKSLLLKFVELLHMLDKGTSRARSRWIAHAALAAAAGRKRVSRALKRLFGRKSGLQVAEEALQGGATVVPLDDVGQLTVRKEMDLCLRILQLFQSGVLLIDEVDLILHPLRSELHWPVGAKQPLDFTRPIATEKGKDPGGGGSAGGPETEEGLRWQLPWHLLDAVFYYQTGSMSVP--FTDSREAKTILDKIREVLR 2842          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12972.1865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI4_ECTSI4.540e-7878.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7Z7_9STRA6.190e-5355.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TMJ4_9STRA4.850e-4046.19EF-Hand 1, calcium-binding site n=2 Tax=Monodopsid... [more]
A0A7S1U8D0_9STRA1.870e-3443.81Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9UG66_9STRA1.330e-3343.89Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4EGX6_9STRA1.090e-3240.10Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4AD69_9STRA1.130e-3240.10Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A2R5FYY4_9STRA2.170e-3244.69Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A2R5GI29_9STRA2.950e-3240.53Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A0G4EXY0_VITBC5.470e-3238.99Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12972contigH-paniculata_contig12972:4708..5986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.2
Seed ortholog evalue1.2e-68
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-18_004640.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons4
Model size597
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12972.1865.1prot_H-paniculata_contig12972.1865.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12972 4720..5986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.4265368-UTR-H-paniculata_contig12972:4707..47191622929023.4265368-UTR-H-paniculata_contig12972:4707..4719Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12972 4708..4719 +
1691480703.2957733-UTR-H-paniculata_contig12972:4707..47191691480703.2957733-UTR-H-paniculata_contig12972:4707..4719Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12972 4708..4719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929023.4393806-CDS-H-paniculata_contig12972:4719..48951622929023.4393806-CDS-H-paniculata_contig12972:4719..4895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12972 4720..4895 +
1691480703.3107853-CDS-H-paniculata_contig12972:4719..48951691480703.3107853-CDS-H-paniculata_contig12972:4719..4895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12972 4720..4895 +
1622929023.4558752-CDS-H-paniculata_contig12972:4977..50121622929023.4558752-CDS-H-paniculata_contig12972:4977..5012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12972 4978..5012 +
1691480703.321053-CDS-H-paniculata_contig12972:4977..50121691480703.321053-CDS-H-paniculata_contig12972:4977..5012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12972 4978..5012 +
1622929023.4679863-CDS-H-paniculata_contig12972:5141..52721622929023.4679863-CDS-H-paniculata_contig12972:5141..5272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12972 5142..5272 +
1691480703.3317194-CDS-H-paniculata_contig12972:5141..52721691480703.3317194-CDS-H-paniculata_contig12972:5141..5272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12972 5142..5272 +
1622929023.4786105-CDS-H-paniculata_contig12972:5743..59861622929023.4786105-CDS-H-paniculata_contig12972:5743..5986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12972 5744..5986 +
1691480703.3442037-CDS-H-paniculata_contig12972:5743..59861691480703.3442037-CDS-H-paniculata_contig12972:5743..5986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12972 5744..5986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12972.1865.1

>prot_H-paniculata_contig12972.1865.1 ID=prot_H-paniculata_contig12972.1865.1|Name=mRNA_H-paniculata_contig12972.1865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MYWKVVEARDRRSVVVTTPTSVKSFMLKLVELVHKLDVSRLQRADDREDD
DIGAAGGISISNALEQSARSPLGMRPRWRKKNTPMVPVEELRKQAEIAVR
VLDVFRRAALLLDEVDLILQPLKSELNWPLGAKRPLDFTRARPGSTLGNG
LRWQIPFHLLEAFFYYTEGRMAVDLAFQDSRRYIVVCAIVAEVAK
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mRNA from alignment at H-paniculata_contig12972:4708..5986+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12972.1865.1 ID=mRNA_H-paniculata_contig12972.1865.1|Name=mRNA_H-paniculata_contig12972.1865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1279bp|location=Sequence derived from alignment at H-paniculata_contig12972:4708..5986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTACGCGCCATGTATTGGAAGGTGGTGGAAGCGAGAGATCGGCGATC GGTTGTCGTTACAACGCCGACCTCGGTCAAGTCCTTCATGCTCAAGCTCG TGGAGCTAGTTCATAAGCTGGACGTCAGCCGGTTGCAGAGAGCGGATGAT CGGGAGGATGATGACATTGGTGCTGCCGGGGGTATCAGGTGCAAGGTGGC ACAGCACAGCTGGGGAACAATTTCCTTGGCAGTCTGAGTGATCGAGCAGT GCGAGTCCTAGTGTATCTAGCATTTCGAATGCACTTGAGCAGTCGGCGCG CTCGCGTAGACAAGGGTTGATATTTGTTTTATTAGTTCAGCATTTCGTGT CTTGTTGCTCGTAGCCGTGTTAGCTAAAGTGGTCGATTGTTCGTTGTGAT TTTCCCAAATGCAATTGGACCTAACTCAGGCGAGCGTTGGGCATGCGCCC GAGGTGGAGGAAAAAGAACACACCGATGGTACCAGTGGAGGAGCTTCGCA AGCAAGCTGAGATTGCCGTAAGGGTGCTGGACGTATTCCGACGTGCGGCT CTTCTTTTGGACGAGGTATGAAGGTCAAGAGCAAGCGTGATTTTTTTTTT TTTTTTCTGTTACCATCATTGTCAGAAACTGAGTCGTGAATTGCGAATTT TTTGGTGAACCGAAACGCGGCGATACACGCTTCCCGTGATAATGTTTGGG CCGCTTTTAGAGCAGTACAGTGTGTGCGTGCGTGCGTGACTCTAGTTGTA GCTACATCTGTCAAAGCATGGGGAGACGGATGTCGGGGATGTCGGGTGGA GCATGTTTATTGCGGAAGTCTGGCGAGAGCTTTGGAATAAGGAAGGGCTT GTAAACCGCGTACGAAGGTTGGATACCAGCAACAATCGGCAACCACATGA ACTCTTTGCCCACGATGTAGCTTCGTGTGTGTCGAGAGGGTTCAAACGTC GTTCTGCGGTGTAACGCTGGCAATCCCTGTTTGATCGTGCTGCTGTGCTG CTGCATTACCCTGTAACGGTGTATGCTCTCCGTCAGGTGGATCTTATCCT CCAGCCGCTGAAGAGCGAGCTTAACTGGCCCCTTGGGGCCAAACGGCCAC TAGACTTCACAAGAGCACGGCCTGGGAGCACGCTGGGCAACGGACTGCGG TGGCAAATTCCGTTCCATCTGTTGGAGGCGTTTTTCTACTACACAGAGGG AAGGATGGCGGTGGACTTGGCCTTCCAGGATAGTCGAAGGTATATAGTAG TTTGTGCAATCGTTGCGGAGGTGGCAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12972:4708..5986+

>mRNA_H-paniculata_contig12972.1865.1 ID=mRNA_H-paniculata_contig12972.1865.1|Name=mRNA_H-paniculata_contig12972.1865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig12972:4708..5986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATTGGAAGGTGGTGGAAGCGAGAGATCGGCGATCGGTTGTCGTTAC
AACGCCGACCTCGGTCAAGTCCTTCATGCTCAAGCTCGTGGAGCTAGTTC
ATAAGCTGGACGTCAGCCGGTTGCAGAGAGCGGATGATCGGGAGGATGAT
GACATTGGTGCTGCCGGGGGTATCAGATGTATTGGAAGGTGGTGGAAGCG
AGAGATCGGCGATCGGTTGTCGTTACAACGCCGACCTCGGTCAAGTCCTT
CATGCTCAAGCTCGTGGAGCTAGTTCATAAGCTGGACGTCAGCCGGTTGC
AGAGAGCGGATGATCGGGAGGATGATGACATTGGTGCTGCCGGGGGTATC
AGCATTTCGAATGCACTTGAGCAGTCGGCGCGCTCGCCATTTCGAATGCA
CTTGAGCAGTCGGCGCGCTCGCCGTTGGGCATGCGCCCGAGGTGGAGGAA
AAAGAACACACCGATGGTACCAGTGGAGGAGCTTCGCAAGCAAGCTGAGA
TTGCCGTAAGGGTGCTGGACGTATTCCGACGTGCGGCTCTTCTTTTGGAC
GAGCGTTGGGCATGCGCCCGAGGTGGAGGAAAAAGAACACACCGATGGTA
CCAGTGGAGGAGCTTCGCAAGCAAGCTGAGATTGCCGTAAGGGTGCTGGA
CGTATTCCGACGTGCGGCTCTTCTTTTGGACGAGGTGGATCTTATCCTCC
AGCCGCTGAAGAGCGAGCTTAACTGGCCCCTTGGGGCCAAACGGCCACTA
GACTTCACAAGAGCACGGCCTGGGAGCACGCTGGGCAACGGACTGCGGTG
GCAAATTCCGTTCCATCTGTTGGAGGCGTTTTTCTACTACACAGAGGGAA
GGATGGCGGTGGACTTGGCCTTCCAGGATAGTCGAAGGTATATAGTAGTT
TGTGCAATCGTTGCGGAGGTGGCAAAGGTGGATCTTATCCTCCAGCCGCT
GAAGAGCGAGCTTAACTGGCCCCTTGGGGCCAAACGGCCACTAGACTTCA
CAAGAGCACGGCCTGGGAGCACGCTGGGCAACGGACTGCGGTGGCAAATT
CCGTTCCATCTGTTGGAGGCGTTTTTCTACTACACAGAGGGAAGGATGGC
GGTGGACTTGGCCTTCCAGGATAGTCGAAGGTATATAGTAGTTTGTGCAA
TCGTTGCGGAGGTGGCAAAG
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